Cucsat.G8369.T28 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G8369.T28
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	serine/arginine-rich splicing factor SR45a-like
Location	ctg1557: 496257 .. 499581 (-)
RNA-Seq Expression	Cucsat.G8369.T28
Synteny	Cucsat.G8369.T28

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGCTCTAGAAACTTCTCTCCTCTCGAGGATATATATATAATGGTTTTGGCTTTCGCACGCAAAATCTCTTCTAATGCGTCTGTCGTTGAAGGCATCCGTGATTGAGTGAGAATCGATAAGAACGCTTCGTCTACTTTAGCTTTGATTTGGGTTTTGCCTTCGCTGATCTGTACGGTAAGTTCCCTTTCTGTGTTTCGTTTTATTTTCGTTTGAGATGAAATGTTTGATCTGGATATGCATTTGATTCTGCTTTCGAACAGGCAGAATTAGGTTGGGGTTATTGTTTTATTGTTTTTTCTGTGATGAGCATGTGCATCCCTTTTTGTTGTTTGAGATGATATGTTCGGGGTTCTGATCGACATGCGCGTTTGATTCCGCTCTCTGTAATGTTTATGGAAAGAATTATATTCTGGTTATTGAGCGGGTTTTGTTTACTCTATGATTCGCTAGTTATGGGATGCAAATGGAGTAGTTTCTGTAATTTACTTGAAAATTTGATTGTTAAATTAGAACCACTTCGGAGATGTTGAAGTCAACCATATTTCTTTTTATTGGAGTCATGGATCTTAAATTGCTAATTTGGTATCATTTGGAGATCGTCCGAGTTTAATCAATTTGGTTTATAATTCTAATTTAGATCGATAGAAGTATAGAACACTCGTAAATATTCCTTGCAGTATGAATTATCTATGAAATTTTTATTAACGCATAAGGACTATTTTTTGAGGTTTTATTAAATCAAACTTAATTCGAATTTTTTTTTAAAACCATAGGACTAAACTAGCTTTCCCCAAACCATAGGAACTTAACTTGCAAGTTAATCTTTTCTTTACTTACGACAGCTCCTTGCGCTGTTCTGTTCAAGACGATATTCATACTTAATAGTACTCTTAACATTATGGTCTTCATCGACGCTTGTGCTTCTCGTTTTAAATCTCTGTTGAATTAAGTGATTTCTTGTTTGGTTCCAGATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGTACTTCCTAACCAGAAACCACTTACTTGCTTGATTTTCCCACCTTCTCTAAATGATACGATGATGCATTTATTCTTATTGTATGGATTCTTAATTCGTTTTTCAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTATGTTCCTGATCTCTCATTTTTTGTTCATTCCTTCTTTCTTTTTTTCCTGGCATGCTATTCTTAGTGGCCGTGTATGTATTTTGTCTTTTGTGTTGGTGATTTAAGTTGTGGACTATCCCCCGTTCATGAATGGATGTCTTTAACTCCAGGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTAAAAAGTGAACTAATTATCTCTTCATAGACTTGGGATGTTTCCTATTGTTACTGTTGTCTTGTTCTTTAATCTGAAATGGTGTACCTGGATGATTTGATGTTAGAGATTTGAGTTTTTTTTGCCAAGTGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAAACAATCAAAACAAACACATGAAGCCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTATTTCTGCCAATTGCATATGTGTTGAGTTATTAAAGTGTTTTAGCTTCTTTTTTCTTTTGTGAATCTCGACACTGTGACTTTGCATCCGTGCTATGGTATTTTTCTTGGATGGAAGCTTGAGTAGCTGGTCTCACTGTTTATCTTTAATTGTTTGACAGGCTCGGAGACGGAGAGGCAGAACTCCAACACCTGGTAGATATCTTGGACTTAGAACAGTTCATGGTGAGATTAAAATCCAATGTTTGGCATATTGCTGTGAAATATCTTTGATATTTCTGTCTAATCCTCATCATTCTGACAGGGAGGCGTAGGTCGCGTAGCTACTCATCTCGGCGTTCTCCCAGCTACTCTCCATATAGAAGAAGCTCTAGCCGCTCTACGCATTGTTCATCTGACCGGAGCAGAAGTAGATCCCGTTCCATTGACCAACATCGTAGAGCATATGGTTCCCCATACCATCGTAGATCGTACTCTTATAGCCGGCGAAGATATGATTCTCCAGACTATAGGCGACGTTATGATTCTCCAGACTACTATAGGCATCATAAGTCATATTCTCGATCTCGCTCACCATATAGGAGGTGGAGCCGTGACAGGTCATACTCACCTTGTGATCACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCTCCGAAGTCAAGGAACAGCAGACATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAAGAACGTTGAGAAACCACTATCGCAGCCCCTCACAGGAATTGAGTAGTTATTCACGTAGTATTTCCCCTGAACGAAGCAGATCAGGAAGCAGTATCTATTCATCCAGTATTTCTCCTGAACGAGGCAGGAGCTCAAGGAGTCGCTCTTGTAGCCATACACCAAGACGACACGAGAGCACACGTAAGAGAGGGTATTCTAGTAGGAGTCGATCGAGAAGCCAAAGTGTAACTTCAAGATCTGTTAGTCCGGCTTGATTAACTGATCTACTTCCCCTCTGCTACATTCTCATGATGATGTACATTTGGAGCTTTTAATACAAATCAATCAGCTGCAGATGTAAACAACTATTCCCCTTGTCTTACGGATGCCTTAGCGTTTGAGATGAAATAGTGGGTTGTGGAATAATTTATTTCTGGTTTGGTTTAATGGCGTACTAGGTGAAACGGAGAAATGTCGACAGGGAAAATGTTGTACGCTCTCAACTAATGTTCGTTCTTAATTCTATTGGGTTAGTTTGTTAACGAGGGGTGTGAAATGTTTTGGTTTAATTTGCCATTTGGATTTCCTACACTATTTGGGTTGGATGTTATGCCTTATCTGAACATGAAAAGATGCCGTACATTTGTGGTTTACCCTAATTGGATTATGCTGTTCTTTAACCTAATATAAACCTCATCTCTACTTTGGGAGTGGTATGAATTTTTTCGTGTATTACTATAAAATTTCTCCTATTCATCCAATAATTTGACCAC

Coding sequence (CDS)

ATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGGAGACGGAGAGGCAGAACTCCAACACCTGGTAGATATCTTGGACTTAGAACAGTTCATGGTGAGATTAAAATCCAATGTTTGGCATATTGCTGTGAAATATCTTTGATATTTCTGTCTAATCCTCATCATTCTGACAGGGAGGCGTAG

Protein sequence

MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHGEIKIQCLAYCCEISLIFLSNPHHSDREA

Homology

[Close]

BLAST of Cucsat.G8369.T28 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44
Identity = 100/145 (68.97%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-FKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S + +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHGEIK 143
           ARRRRGRTPTPG+YLGLRT  G  K
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHK 175

[Close]

BLAST of Cucsat.G8369.T28 vs. ExPASy Swiss-Prot
Match: Q10422 (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-18
Identity = 45/114 (39.47%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 20  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLT 79
           + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P+T
Sbjct: 79  NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138

Query: 80  RESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLG 134
           + SRGFGF++ S+ +EA + I  LN     GR++ V+KA+R R  +PTPG+Y+G
Sbjct: 139 KASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192

[Close]

BLAST of Cucsat.G8369.T28 vs. ExPASy Swiss-Prot
Match: Q3ZBT6 (Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-12
Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 4   SRRSRYSRSPSFKRSVSRSLSRSRSR--------SRSPSS-------DVENPGNN--LYV 63
           S R  Y+RS S  RS  RS SRS SR        S SP S       +  NP  N  L V
Sbjct: 63  SSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGV 122

Query: 64  TGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRS 123
            GLS   T R+L + FS  G + DV +V D  +R SRGF F+   + D+A+   +  N  
Sbjct: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182

Query: 124 VLEGRIITVEKARRRRGRTPTPGRYLGLRT 137
            L+GR I V+ +  +R  TPTPG Y+G  T
Sbjct: 183 ELDGRRIRVDFSITKRPHTPTPGIYMGRPT 212

[Close]

BLAST of Cucsat.G8369.T28 vs. ExPASy Swiss-Prot
Match: P62995 (Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-12
Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 4   SRRSRYSRSPSFKRSVSRSLSRSRSR--------SRSPSS-------DVENPGNN--LYV 63
           S R  Y+RS S  RS  RS SRS SR        S SP S       +  NP  N  L V
Sbjct: 63  SSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGV 122

Query: 64  TGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRS 123
            GLS   T R+L + FS  G + DV +V D  +R SRGF F+   + D+A+   +  N  
Sbjct: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182

Query: 124 VLEGRIITVEKARRRRGRTPTPGRYLGLRT 137
            L+GR I V+ +  +R  TPTPG Y+G  T
Sbjct: 183 ELDGRRIRVDFSITKRPHTPTPGIYMGRPT 212

[Close]

BLAST of Cucsat.G8369.T28 vs. ExPASy Swiss-Prot
Match: P62996 (Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-12
Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 4   SRRSRYSRSPSFKRSVSRSLSRSRSR--------SRSPSS-------DVENPGNN--LYV 63
           S R  Y+RS S  RS  RS SRS SR        S SP S       +  NP  N  L V
Sbjct: 63  SSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGV 122

Query: 64  TGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRS 123
            GLS   T R+L + FS  G + DV +V D  +R SRGF F+   + D+A+   +  N  
Sbjct: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182

Query: 124 VLEGRIITVEKARRRRGRTPTPGRYLGLRT 137
            L+GR I V+ +  +R  TPTPG Y+G  T
Sbjct: 183 ELDGRRIRVDFSITKRPHTPTPGIYMGRPT 212

[Close]

BLAST of Cucsat.G8369.T28 vs. NCBI nr
Match: KAA0031790.1 (serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa])

HSP 1 Score: 263 bits (672), Expect = 9.24e-86
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGE 140
           RRGRTPTPGRYLGLRTVHG 
Sbjct: 121 RRGRTPTPGRYLGLRTVHGR 140

[Close]

BLAST of Cucsat.G8369.T28 vs. NCBI nr
Match: TYJ97341.1 (serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa])

HSP 1 Score: 262 bits (669), Expect = 2.64e-85
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGE 140
           RRGRTPTPGRYLGLRTVHG 
Sbjct: 121 RRGRTPTPGRYLGLRTVHGR 140

[Close]

BLAST of Cucsat.G8369.T28 vs. NCBI nr
Match: XP_004145262.1 (serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothetical protein Csa_023227 [Cucumis sativus])

HSP 1 Score: 263 bits (672), Expect = 1.33e-84
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGE 140
           RRGRTPTPGRYLGLRTVHG 
Sbjct: 121 RRGRTPTPGRYLGLRTVHGR 140

[Close]

BLAST of Cucsat.G8369.T28 vs. NCBI nr
Match: XP_008457405.1 (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo])

HSP 1 Score: 259 bits (662), Expect = 4.58e-83
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVH 138
           RRGRTPTPGRYLGLRTVH
Sbjct: 121 RRGRTPTPGRYLGLRTVH 138

[Close]

BLAST of Cucsat.G8369.T28 vs. NCBI nr
Match: XP_038894517.1 (serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida])

HSP 1 Score: 253 bits (646), Expect = 8.93e-81
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MS SRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSCSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DPLTRESRGFGFITMSSNDEA+NCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPLTRESRGFGFITMSSNDEADNCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVH 138
           RRGRTPTPGRYLGLRTVH
Sbjct: 121 RRGRTPTPGRYLGLRTVH 138

[Close]

BLAST of Cucsat.G8369.T28 vs. ExPASy TrEMBL
Match: A0A5A7SM07 (Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00310 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 4.47e-86
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGE 140
           RRGRTPTPGRYLGLRTVHG 
Sbjct: 121 RRGRTPTPGRYLGLRTVHGR 140

[Close]

BLAST of Cucsat.G8369.T28 vs. ExPASy TrEMBL
Match: A0A5D3BFE7 (Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001490 PE=4 SV=1)

HSP 1 Score: 262 bits (669), Expect = 1.28e-85
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGE 140
           RRGRTPTPGRYLGLRTVHG 
Sbjct: 121 RRGRTPTPGRYLGLRTVHGR 140

[Close]

BLAST of Cucsat.G8369.T28 vs. ExPASy TrEMBL
Match: A0A0A0LXJ6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 6.42e-85
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGE 140
           RRGRTPTPGRYLGLRTVHG 
Sbjct: 121 RRGRTPTPGRYLGLRTVHGR 140

[Close]

BLAST of Cucsat.G8369.T28 vs. ExPASy TrEMBL
Match: A0A1S3C508 (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 259 bits (662), Expect = 2.22e-83
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVH 138
           RRGRTPTPGRYLGLRTVH
Sbjct: 121 RRGRTPTPGRYLGLRTVH 138

[Close]

BLAST of Cucsat.G8369.T28 vs. ExPASy TrEMBL
Match: A0A6J1KD79 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492800 PE=4 SV=1)

HSP 1 Score: 245 bits (625), Expect = 4.67e-78
Identity = 131/137 (95.62%), Postives = 132/137 (96.35%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTV 137
           RRGRTPTPGRY GLRTV
Sbjct: 121 RRGRTPTPGRYFGLRTV 137

The following BLAST results are available for this feature:

BLAST of Cucsat.G8369.T28 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	1.4e-44	68.97	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q10422	3.9e-18	39.47	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
Q3ZBT6	4.2e-12	40.00	Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1	[more]
P62995	4.2e-12	40.00	Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1	[more]
P62996	4.2e-12	40.00	Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1	[more]

BLAST of Cucsat.G8369.T28 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031790.1	9.24e-86	99.29	serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]	[more]
TYJ97341.1	2.64e-85	98.57	serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]	[more]
XP_004145262.1	1.33e-84	99.29	serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothe...	[more]
XP_008457405.1	4.58e-83	99.28	PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]	[more]
XP_038894517.1	8.93e-81	97.10	serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida]	[more]

BLAST of Cucsat.G8369.T28 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SM07	4.47e-86	99.29	Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BFE7	1.28e-85	98.57	Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0LXJ6	6.42e-85	99.29	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV...	[more]
A0A1S3C508	2.22e-83	99.28	serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1KD79	4.67e-78	95.62	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita maxima O...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 43..116 e-value: 2.0E-22 score: 90.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 44..113 e-value: 1.6E-15 score: 56.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 42..120 score: 17.097071
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..126 e-value: 1.8E-27 score: 98.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 8..141
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 8..141
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 30..135

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G8369	Cucsat.G8369	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8369.T28.E1	Cucsat.G8369.T28.E1	exon
Cucsat.G8369.T28.E2	Cucsat.G8369.T28.E2	exon
Cucsat.G8369.T28.E3	Cucsat.G8369.T28.E3	exon
Cucsat.G8369.T28.E4	Cucsat.G8369.T28.E4	exon
Cucsat.G8369.T28.E5	Cucsat.G8369.T28.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8369.T28.C4	Cucsat.G8369.T28.C4	CDS
Cucsat.G8369.T28.C3	Cucsat.G8369.T28.C3	CDS
Cucsat.G8369.T28.C2	Cucsat.G8369.T28.C2	CDS
Cucsat.G8369.T28.C1	Cucsat.G8369.T28.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8369.T28	Cucsat.G8369.T28-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding