Cucsat.G8369.T5 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G8369.T5
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionserine/arginine-rich splicing factor SR45a-like
Locationctg1557: 496211 .. 499581 (-)
RNA-Seq ExpressionCucsat.G8369.T5
SyntenyCucsat.G8369.T5
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGCTCTAGAAACTTCTCTCCTCTCGAGGATATATATATAATGGTTTTGGCTTTCGCACGCAAAATCTCTTCTAATGCGTCTGTCGTTGAAGGCATCCGTGATTGAGTGAGAATCGATAAGAACGCTTCGTCTACTTTAGCTTTGATTTGGGTTTTGCCTTCGCTGATCTGTACGGTAAGTTCCCTTTCTGTGTTTCGTTTTATTTTCGTTTGAGATGAAATGTTTGATCTGGATATGCATTTGATTCTGCTTTCGAACAGGCAGAATTAGGTTGGGGTTATTGTTTTATTGTTTTTTCTGTGATGAGCATGTGCATCCCTTTTTGTTGTTTGAGATGATATGTTCGGGGTTCTGATCGACATGCGCGTTTGATTCCGCTCTCTGTAATGTTTATGGAAAGAATTATATTCTGGTTATTGAGCGGGTTTTGTTTACTCTATGATTCGCTAGTTATGGGATGCAAATGGAGTAGTTTCTGTAATTTACTTGAAAATTTGATTGTTAAATTAGAACCACTTCGGAGATGTTGAAGTCAACCATATTTCTTTTTATTGGAGTCATGGATCTTAAATTGCTAATTTGGTATCATTTGGAGATCGTCCGAGTTTAATCAATTTGGTTTATAATTCTAATTTAGATCGATAGAAGTATAGAACACTCGTAAATATTCCTTGCAGTATGAATTATCTATGAAATTTTTATTAACGCATAAGGACTATTTTTTGAGGTTTTATTAAATCAAACTTAATTCGAATTTTTTTTTAAAACCATAGGACTAAACTAGCTTTCCCCAAACCATAGGAACTTAACTTGCAAGTTAATCTTTTCTTTACTTACGACAGCTCCTTGCGCTGTTCTGTTCAAGACGATATTCATACTTAATAGTACTCTTAACATTATGGTCTTCATCGACGCTTGTGCTTCTCGTTTTAAATCTCTGTTGAATTAAGTGATTTCTTGTTTGGTTCCAGATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGTACTTCCTAACCAGAAACCACTTACTTGCTTGATTTTCCCACCTTCTCTAAATGATACGATGATGCATTTATTCTTATTGTATGGATTCTTAATTCGTTTTTCAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTATGTTCCTGATCTCTCATTTTTTGTTCATTCCTTCTTTCTTTTTTTCCTGGCATGCTATTCTTAGTGGCCGTGTATGTATTTTGTCTTTTGTGTTGGTGATTTAAGTTGTGGACTATCCCCCGTTCATGAATGGATGTCTTTAACTCCAGGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTAAAAAGTGAACTAATTATCTCTTCATAGACTTGGGATGTTTCCTATTGTTACTGTTGTCTTGTTCTTTAATCTGAAATGGTGTACCTGGATGATTTGATGTTAGAGATTTGAGTTTTTTTTGCCAAGTGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAAACAATCAAAACAAACACATGAAGCCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTATTTCTGCCAATTGCATATGTGTTGAGTTATTAAAGTGTTTTAGCTTCTTTTTTCTTTTGTGAATCTCGACACTGTGACTTTGCATCCGTGCTATGGTATTTTTCTTGGATGGAAGCTTGAGTAGCTGGTCTCACTGTTTATCTTTAATTGTTTGACAGGCTCGGAGACGGAGAGGCAGAACTCCAACACCTGGTAGATATCTTGGACTTAGAACAGTTCATGGTGAGATTAAAATCCAATGTTTGGCATATTGCTGTGAAATATCTTTGATATTTCTGTCTAATCCTCATCATTCTGACAGGGAGGCGTAGGTCGCGTAGCTACTCATCTCGGCGTTCTCCCAGCTACTCTCCATATAGAAGAAGCTCTAGCCGCTCTACGCATTGTTCATCTGACCGGAGCAGAAGTAGATCCCGTTCCATTGACCAACATCGTAGAGCATATGGTTCCCCATACCATCGTAGATCGTACTCTTATAGCCGGCGAAGATATGATTCTCCAGACTATAGGCGACGTTATGATTCTCCAGACTACTATAGGCATCATAAGTCATATTCTCGATCTCGCTCACCATATAGGAGGTGGAGCCGTGACAGGTCATACTCACCTTGTGATCACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCTCCGAAGTCAAGGAACAGCAGACATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAAGAACGTTGAGAAACCACTATCGCAGCCCCTCACAGGAATTGAGTAGTTATTCACGTAGTATTTCCCCTGAACGAAGCAGATCAGGAAGCAGTATCTATTCATCCAGTATTTCTCCTGAACGAGGCAGGAGCTCAAGGAGTCGCTCTTGTAGCCATACACCAAGACGACACGAGAGCACACGTAAGAGAGGGTATTCTAGTAGGAGTCGATCGAGAAGCCAAAGTGTAACTTCAAGATCTGTTAGTCCGGCTTGATTAACTGATCTACTTCCCCTCTGCTACATTCTCATGATGATGTACATTTGGAGCTTTTAATACAAATCAATCAGCTGCAGATGTAAACAACTATTCCCCTTGTCTTACGGATGCCTTAGCGTTTGAGATGAAATAGTGGGTTGTGGAATAATTTATTTCTGGTTTGGTTTAATGGCGTACTAGGTGAAACGGAGAAATGTCGACAGGGAAAATGTTGTACGCTCTCAACTAATGTTCGTTCTTAATTCTATTGGGTTAGTTTGTTAACGAGGGGTGTGAAATGTTTTGGTTTAATTTGCCATTTGGATTTCCTACACTATTTGGGTTGGATGTTATGCCTTATCTGAACATGAAAAGATGCCGTACATTTGTGGTTTACCCTAATTGGATTATGCTGTTCTTTAACCTAATATAAACCTCATCTCTACTTTGGGAGTGGTATGAATTTTTTCGTGTATTACTATAAAATTTCTCCTATTCATCCAATAATTTGACCACCAAGTTATTAACATTTGTTCTGCCTCTTCCTGTTTTGGTTTTCCTT

Coding sequence (CDS)

ATGGGAGGCGTAGGTCGCGTAGCTACTCATCTCGGCGTTCTCCCAGCTACTCTCCATATAGAAGAAGCTCTAGCCGCTCTACGCATTGTTCATCTGACCGGAGCAGAAGTAGATCCCGTTCCATTGACCAACATCGTAGAGCATATGGTTCCCCATACCATCGTAGATCGTACTCTTATAGCCGGCGAAGATATGATTCTCCAGACTATAGGCGACGTTATGATTCTCCAGACTACTATAGGCATCATAAGTCATATTCTCGATCTCGCTCACCATATAGGAGGTGGAGCCGTGACAGGTCATACTCACCTTGTGATCACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCTCCGAAGTCAAGGAACAGCAGACATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAAGAACGTTGA

Protein sequence

MGGVGRVATHLGVLPATLHIEEALAALRIVHLTGAEVDPVPLTNIVEHMVPHTIVDRTLIAGEDMILQTIGDVMILQTTIGIISHILDLAHHIGGGAVTGHTHLVITIPLILTTEGTGTGQFLGAFLRSQGTADITPEVTLLSLGEER
Homology
[Close]
BLAST of Cucsat.G8369.T5 vs. NCBI nr
Match: KAA0031790.1 (serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa])

HSP 1 Score: 230 bits (586), Expect = 4.87e-73
Identity = 122/144 (84.72%), Postives = 127/144 (88.19%), Query Frame = 0 

Query: 5   GRVATHLGVLPATLHIEEALAALRIVHLTGAEVDPVPLTNIVEHMVPHTIVDRTLIAGED 64
           GR ATHL VLPATLHI EALAAL I+HLT A VDPVP T+IV+HMVP TIVD TLIAGED
Sbjct: 139 GREATHLAVLPATLHIGEALAALLIIHLTVAGVDPVPSTDIVDHMVPLTIVDHTLIAGED 198

Query: 65  MILQTIGDVMILQTTIGIISHILDLAHHIGGGAVTGHTHLVITIPLILTTEGTGTGQFLG 124
           MIL TIGD MILQTTIGII HILD AH IGGGA TGHTHL+ITIPLILTTEGTGTGQFLG
Sbjct: 199 MILHTIGDDMILQTTIGIIGHILDPAHRIGGGAATGHTHLMITIPLILTTEGTGTGQFLG 258

Query: 125 AFLRSQGTADITPEVTLLSLGEER 148
           AF +SQGTA ITPEVTLLSLGEER
Sbjct: 259 AFHQSQGTAGITPEVTLLSLGEER 282

[Close]
BLAST of Cucsat.G8369.T5 vs. NCBI nr
Match: TYJ97341.1 (serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa])

HSP 1 Score: 227 bits (579), Expect = 5.61e-72
Identity = 121/144 (84.03%), Postives = 126/144 (87.50%), Query Frame = 0 

Query: 5   GRVATHLGVLPATLHIEEALAALRIVHLTGAEVDPVPLTNIVEHMVPHTIVDRTLIAGED 64
           GR ATHL VLPATLHI EALAAL I+HLT A VDPVP T+IV+HMVP TIVD TLIAGED
Sbjct: 139 GREATHLAVLPATLHIGEALAALLIIHLTVAGVDPVPSTDIVDHMVPLTIVDHTLIAGED 198

Query: 65  MILQTIGDVMILQTTIGIISHILDLAHHIGGGAVTGHTHLVITIPLILTTEGTGTGQFLG 124
           MIL TIGD MILQTTIGII HILD AH IGGGA TGHTHL+ITIPLILTTEGTGTGQFLG
Sbjct: 199 MILHTIGDDMILQTTIGIIGHILDPAHRIGGGAATGHTHLMITIPLILTTEGTGTGQFLG 258

Query: 125 AFLRSQGTADITPEVTLLSLGEER 148
           AF +SQGTA ITPEVTLLS GEER
Sbjct: 259 AFHQSQGTAGITPEVTLLSPGEER 282

[Close]
BLAST of Cucsat.G8369.T5 vs. NCBI nr
Match: KAG7036969.1 (Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 2.13e-10
Identity = 54/124 (43.55%), Postives = 65/124 (52.42%), Query Frame = 0 

Query: 38  DPVPLTNIVEHMVPHTI-VDRT-LIAGEDMILQTIGDV-MILQTTIGIISH--------I 97
           DP+   +  + M  HT  +D T LIA EDMIL TIG +  IL  T+ ++          I
Sbjct: 157 DPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRI 216

Query: 98  LDLAHHIGG---GAVTGHTHLVITIPLILTTEGTGTGQFLGAFLRSQG-TADITPEVTLL 146
           LD   H+ G   G  TG THL    PLI TTEGTG GQFLG   + QG   D+ P V LL
Sbjct: 217 LDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILL 276

[Close]
BLAST of Cucsat.G8369.T5 vs. ExPASy TrEMBL
Match: A0A5A7SM07 (Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00310 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 2.36e-73
Identity = 122/144 (84.72%), Postives = 127/144 (88.19%), Query Frame = 0 

Query: 5   GRVATHLGVLPATLHIEEALAALRIVHLTGAEVDPVPLTNIVEHMVPHTIVDRTLIAGED 64
           GR ATHL VLPATLHI EALAAL I+HLT A VDPVP T+IV+HMVP TIVD TLIAGED
Sbjct: 139 GREATHLAVLPATLHIGEALAALLIIHLTVAGVDPVPSTDIVDHMVPLTIVDHTLIAGED 198

Query: 65  MILQTIGDVMILQTTIGIISHILDLAHHIGGGAVTGHTHLVITIPLILTTEGTGTGQFLG 124
           MIL TIGD MILQTTIGII HILD AH IGGGA TGHTHL+ITIPLILTTEGTGTGQFLG
Sbjct: 199 MILHTIGDDMILQTTIGIIGHILDPAHRIGGGAATGHTHLMITIPLILTTEGTGTGQFLG 258

Query: 125 AFLRSQGTADITPEVTLLSLGEER 148
           AF +SQGTA ITPEVTLLSLGEER
Sbjct: 259 AFHQSQGTAGITPEVTLLSLGEER 282

[Close]
BLAST of Cucsat.G8369.T5 vs. ExPASy TrEMBL
Match: A0A5D3BFE7 (Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001490 PE=4 SV=1)

HSP 1 Score: 227 bits (579), Expect = 2.71e-72
Identity = 121/144 (84.03%), Postives = 126/144 (87.50%), Query Frame = 0 

Query: 5   GRVATHLGVLPATLHIEEALAALRIVHLTGAEVDPVPLTNIVEHMVPHTIVDRTLIAGED 64
           GR ATHL VLPATLHI EALAAL I+HLT A VDPVP T+IV+HMVP TIVD TLIAGED
Sbjct: 139 GREATHLAVLPATLHIGEALAALLIIHLTVAGVDPVPSTDIVDHMVPLTIVDHTLIAGED 198

Query: 65  MILQTIGDVMILQTTIGIISHILDLAHHIGGGAVTGHTHLVITIPLILTTEGTGTGQFLG 124
           MIL TIGD MILQTTIGII HILD AH IGGGA TGHTHL+ITIPLILTTEGTGTGQFLG
Sbjct: 199 MILHTIGDDMILQTTIGIIGHILDPAHRIGGGAATGHTHLMITIPLILTTEGTGTGQFLG 258

Query: 125 AFLRSQGTADITPEVTLLSLGEER 148
           AF +SQGTA ITPEVTLLS GEER
Sbjct: 259 AFHQSQGTAGITPEVTLLSPGEER 282

The following BLAST results are available for this feature:
BLAST of Cucsat.G8369.T5 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G8369.T5 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031790.14.87e-7384.72serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa][more]
TYJ97341.15.61e-7284.03serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa][more]
KAG7036969.12.13e-1043.55Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cucsat.G8369.T5 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SM072.36e-7384.72Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3BFE72.71e-7284.03Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1... [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G8369Cucsat.G8369gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G8369.T5.E1Cucsat.G8369.T5.E1exon
Cucsat.G8369.T5.E2Cucsat.G8369.T5.E2exon
Cucsat.G8369.T5.E3Cucsat.G8369.T5.E3exon
Cucsat.G8369.T5.E4Cucsat.G8369.T5.E4exon
Cucsat.G8369.T5.E5Cucsat.G8369.T5.E5exon
Cucsat.G8369.T5.E6Cucsat.G8369.T5.E6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G8369.T5.C2Cucsat.G8369.T5.C2CDS
Cucsat.G8369.T5.C1Cucsat.G8369.T5.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G8369.T5Cucsat.G8369.T5-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048026 positive regulation of mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding