Cucsat.G8004 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G8004
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	3-isopropylmalate dehydratase large subunit, chloroplastic isoform B
Location	ctg1556: 2244172 .. 2246541 (-)
RNA-Seq Expression	Cucsat.G8004
Synteny	Cucsat.G8004

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGCTATGGACTAAAATAAGTGGGCCGTGGGCTATGTTACAACCCAAATTCGTTTCAAGTCCAAGCCAGAAAAAGGCCCAAAAAGATCTGTCTTCCTCTTCCTCCTCAAGAAAAACGACGAACCTGAAAAACCTCCTCAGCTTCAAGGTTCCCGGAGCTTCATTGCAGAATGGATTCGGCCTCCAAATTCCTTCGTAGTTTAGCTAATGCCACCAACAAAAACACCGTTATCAACGTCTGTTTAGTCGTTTCCTTCGCCGCACTGACCGCAAGGTCAATCAAGCAGGAGAGACAAATTGAAGCTCTGGAAACCGAGAAAAATTCACTTCTCAATTCCAATAAAGCGTTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTATTCGCCGAAGCCTCAACCGAATCTGCTTTAGTCCCTCTTGCCAGGATCAAAGCTATCTATGGCGAAGCTCCCATTTCCCCTTCCGGTAATATACGCCATGCTTCTCTCTGTTCTGTTCTTTATGTTTTTTTACTTTCTGTTGTTGGAAAAGTTAGTGTTTAGTTGAATGTGTCGAAATGTTAGTGATTCGTGTTAGAAATTGAGTGTCTGAAAATGATGGGTCGTTCCAAGCATTTCAAATTCCTTATTCGTACTTTACAAATTGTTGGGTTTCGTTGCTACTTCAACTATATCATCATTGACCTGATTTTTCTTATCATCCATTTCTGAACTTCAATGTTGTTATGATTAAGTACCATGTTCTTGGTTTTCATGGATTCTAATCTCTCAGAACTATTAGCCAGAACCCAGGAAACAAATAAGGTATGAGATTATGAATCTAAAAAGAATAGTTTTCATCGCACCATTATATGAAAAAAAGTGTGTTTGAGAAGTGAATGTTCTATTATGGGATGCTGGAATTGAAGACTAAAGTTAAGATTGATAAGGTCAACAGAACCTCCACCTATCTTCTACCTTGGCTATAAACTCGAACTACCCAAATGGTCTCGTACTAATTAAGATAATTGTTCTCACTCATGTACTAATGATTGTACTCATGTTTGCCCTAAAGATAATCGATAAAGAAGGAACCATACCCAGCCAAGCCTAAAGCCACTGAGCAATTCTCTACCTTCATCCTTTCCTACATTTCAATTTACGAATCACCTTGACAACTTTCACCCTGATAGACCATGCTGATCATTCCTGTTCTCTGCCTATTAAGTTAACGTTCCTGCCCAGCTGATGCTAAGGTTTTCATTATGGGGATAGTATATGCTGTATTAAACTTTACCGGGAAAGCACTGCTATAGTACTACGATTTTATATGAGAAAGAGACGCTTGAAAAGCTTATATGCGAAAGGAAGCAATTTCTCTTATTGGAAGCTTAAGAAAGGCACTCCAATTGAAGTTGATTGTGAAGGCAGAATAGTCATAGATGATAGGAGGAGTTGGAAGGGGAAGCTAAAAGACCATTGAACTTTTCCAATTCTTGAACGTCTTCCCCATATCTCTCCCTATTATTAGAAATCTGTTAATTTCTTTCTTTCTAGCCACCAGCCACTATACCTAATCCTGGACTGCATTTTGCTATAGGATCTCTCTCCTTTCGTAGTTGGTTCAGCACAGAAGCTGCATCTAACTATCCTTGGTCCGTAAATAAAAAACCGAGAAAATGATGATGTAGAGGAAAACTAGTAAAAGGCTTTGTGTCTTCTTTGGATTCCTACATAGTATGCACCAACTTAACTTGGTTGCAAGATCAGCAATTGTCATCTTCAAATTGGATTTTTGTATCTCCATTGTGTTTAGGTCAAGACACACAAACCAACAATATCTCTCGATTTTTATAAATTGGTTACCTTTCCAATTTGATAGTGATAAGTTTCTAGGTAGTGAGGAAACCAGTCTGCTATCTAGCTGTCATTGATCAACAGAAATGCGTTGCTTTCGTCAACCTTATGATAATATTACCCTGTTGACGATGACTCTAGTATGTATTTCGTAACTTTTGGGGAGTTATGAAGATCTTTGCTCAAGAATTGGTACTAAAATGTCTGCTTTTAGTACAAACGGATTGTAATTTCAGATAGATTGGAAGATAAACAGCACGAGTAGATTTTTTGAAAAAAAAGATTCAAATGCATGTTTGATGCAAAACTTTTACCCTTTTTCCTGGCAGAGTTCTTGCATAACAATGTTGGGAATCTATTAAACGATTGCCTATAAATTAATAATCGTAATGTAATGTGAGAGTTTTAAGTCTCGATTCAGATTATGTCAAATCCTATCCATATTATTTCATTCTCCCATGCATATTATTTAGTTATTGAACACATGAATCAAATACTCTTGTGGATAGTATTTTTTCAAGTTTGATTACAAAAAGAAGTGTTTGTTTAGAAAGAGTTTTAAGTGTCTAAAAAGTCATTTTGAATATGTTCAAGTCTATTATTGTACAGGCTAGCTTTTACAGATTTATCCATTGATCCCTTTTTTATGGACCATACAGGAGCAGTAAATGCCACAACCGAAGATGCAACTTCACGAAGCTCCAAACTTATGGTTTAATGTTAGCTTCACTCAAGTTTTCCAGGTTTTGTTTCCTTTGTTCACAAATTGGCTGAAGAATCGAACTCCATTAAGATTTGCATATTTCTATGCTCAATGCTAAAAAAAGTAGTGCAGAATATAAGGAATTAGATTTTTCCTTCTTCAGGCACGTATTATCAACTTCAAAGTTAGATATCATATTCCCTACCCTCACATTTTCAGAAGGAAAAAAGAAAAAAAAATCTTTTAGTTTGCCATTAAATGCTCTAGAATAAAACAGCTGATGTAGTCAAAAGCTCCATGATGACAAAGCATCATTATACAACCTTTTGCAACTACTTTAAAATAGGTTAAAGTGTGGTTTTAGTCTCGCACCTTGAAGATTGTTTAGGTTTAGTTTCTTTTTAATCTTCGCGCTTTTTATAAATTTTAAAGTTAATTTGTTATTGTTGATAAATACTTGTTATTATCTATTAGCATTTTTACTATAGTTTTGAAAACGCATAAGCATTTTATATTTATTT

Coding sequence (CDS)

ATGGATTCGGCCTCCAAATTCCTTCGTAGTTTAGCTAATGCCACCAACAAAAACACCGTTATCAACGTCTGTTTAGTCGTTTCCTTCGCCGCACTGACCGCAAGGTCAATCAAGCAGGAGAGACAAATTGAAGCTCTGGAAACCGAGAAAAATTCACTTCTCAATTCCAATAAAGCGTTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTATTCGCCGAAGCCTCAACCGAATCTGCTTTAGTCCCTCTTGCCAGGATCAAAGCTATCTATGGCGAAGCTCCCATTTCCCCTTCCGGAGCAGTAAATGCCACAACCGAAGATGCAACTTCACGAAGCTCCAAACTTATGGTTTAA

Protein sequence

MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV

Homology

[Close]

BLAST of Cucsat.G8004 vs. NCBI nr
Match: XP_004151748.1 (uncharacterized protein LOC101219754 [Cucumis sativus] >KGN54811.2 hypothetical protein Csa_012251 [Cucumis sativus])

HSP 1 Score: 191 bits (485), Expect = 1.94e-60
Identity = 101/107 (94.39%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 10  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 69
           MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL
Sbjct: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60

Query: 70  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSELLARTQE 116
           KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS  +  T E
Sbjct: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTE 107

[Close]

BLAST of Cucsat.G8004 vs. NCBI nr
Match: XP_008444149.1 (PREDICTED: uncharacterized protein LOC103487583 [Cucumis melo])

HSP 1 Score: 170 bits (430), Expect = 4.69e-52
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 10  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 69
           MD ASKFLR L+N  NKNT+INVCLV SFAAL+ARSIKQERQIEALE EKNSLL+SNKAL
Sbjct: 1   MDLASKFLRILSNDNNKNTLINVCLVFSFAALSARSIKQERQIEALEAEKNSLLDSNKAL 60

Query: 70  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS 108
           KKTMWDWKQQLFAEAST+SALVPLARIKAIYGEAPISPS
Sbjct: 61  KKTMWDWKQQLFAEASTQSALVPLARIKAIYGEAPISPS 99

[Close]

BLAST of Cucsat.G8004 vs. NCBI nr
Match: XP_038897052.1 (uncharacterized protein LOC120085226 [Benincasa hispida])

HSP 1 Score: 167 bits (423), Expect = 5.46e-51
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 10  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 69
           MD ASKFLR++ NATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK SLLNSNKAL
Sbjct: 1   MDLASKFLRTVTNATNNNTLINVCLVLSFGALSARSIKQQREIEALEAEKVSLLNSNKAL 60

Query: 70  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS 108
           KKTMWDWKQQLFAEAST+SALVPLARIKAIYGEAPISPS
Sbjct: 61  KKTMWDWKQQLFAEASTDSALVPLARIKAIYGEAPISPS 99

[Close]

BLAST of Cucsat.G8004 vs. NCBI nr
Match: XP_022976887.1 (uncharacterized protein LOC111477117 [Cucurbita maxima])

HSP 1 Score: 165 bits (418), Expect = 3.16e-50
Identity = 81/99 (81.82%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 10  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 69
           MD ASKFLR+L NATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK+SLLNSNKAL
Sbjct: 1   MDLASKFLRTLTNATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 70  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS 108
           KKTMWDWKQQL++EAST+SAL+PLARIKAIY EAP+SPS
Sbjct: 61  KKTMWDWKQQLYSEASTDSALIPLARIKAIYSEAPVSPS 99

[Close]

BLAST of Cucsat.G8004 vs. NCBI nr
Match: XP_022937146.1 (uncharacterized protein LOC111443531 [Cucurbita moschata] >XP_023536544.1 uncharacterized protein LOC111797682 [Cucurbita pepo subsp. pepo] >KAG7024766.1 hypothetical protein SDJN02_13584 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161 bits (408), Expect = 1.05e-48
Identity = 78/99 (78.79%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 10  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 69
           MD A+KFLR++ +ATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK+SLLNSNK+L
Sbjct: 1   MDLATKFLRTVTSATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKSL 60

Query: 70  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS 108
           KKTMWDWKQQL+++AST+SALVPLARIKAIYGEAP+SPS
Sbjct: 61  KKTMWDWKQQLYSDASTDSALVPLARIKAIYGEAPVSPS 99

[Close]

BLAST of Cucsat.G8004 vs. ExPASy TrEMBL
Match: A0A0A0L380 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G364020 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 4.65e-60
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 10  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 69
           MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL
Sbjct: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60

Query: 70  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS 108
           KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS
Sbjct: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS 99

[Close]

BLAST of Cucsat.G8004 vs. ExPASy TrEMBL
Match: A0A1S3B9R7 (uncharacterized protein LOC103487583 OS=Cucumis melo OX=3656 GN=LOC103487583 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 2.27e-52
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 10  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 69
           MD ASKFLR L+N  NKNT+INVCLV SFAAL+ARSIKQERQIEALE EKNSLL+SNKAL
Sbjct: 1   MDLASKFLRILSNDNNKNTLINVCLVFSFAALSARSIKQERQIEALEAEKNSLLDSNKAL 60

Query: 70  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS 108
           KKTMWDWKQQLFAEAST+SALVPLARIKAIYGEAPISPS
Sbjct: 61  KKTMWDWKQQLFAEASTQSALVPLARIKAIYGEAPISPS 99

[Close]

BLAST of Cucsat.G8004 vs. ExPASy TrEMBL
Match: A0A6J1IGY3 (uncharacterized protein LOC111477117 OS=Cucurbita maxima OX=3661 GN=LOC111477117 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 1.53e-50
Identity = 81/99 (81.82%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 10  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 69
           MD ASKFLR+L NATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK+SLLNSNKAL
Sbjct: 1   MDLASKFLRTLTNATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 70  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS 108
           KKTMWDWKQQL++EAST+SAL+PLARIKAIY EAP+SPS
Sbjct: 61  KKTMWDWKQQLYSEASTDSALIPLARIKAIYSEAPVSPS 99

[Close]

BLAST of Cucsat.G8004 vs. ExPASy TrEMBL
Match: A0A6J1F9J6 (uncharacterized protein LOC111443531 OS=Cucurbita moschata OX=3662 GN=LOC111443531 PE=4 SV=1)

HSP 1 Score: 161 bits (408), Expect = 5.10e-49
Identity = 78/99 (78.79%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 10  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 69
           MD A+KFLR++ +ATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK+SLLNSNK+L
Sbjct: 1   MDLATKFLRTVTSATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKSL 60

Query: 70  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPS 108
           KKTMWDWKQQL+++AST+SALVPLARIKAIYGEAP+SPS
Sbjct: 61  KKTMWDWKQQLYSDASTDSALVPLARIKAIYGEAPVSPS 99

[Close]

BLAST of Cucsat.G8004 vs. ExPASy TrEMBL
Match: A0A6J1CGB8 (uncharacterized protein LOC111011272 OS=Momordica charantia OX=3673 GN=LOC111011272 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 6.12e-48
Identity = 80/97 (82.47%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 10  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 69
           MD A+KFLR+L NA+N  T+INVCLVVSF AL+ARSIKQ+R+IEALE EK+SLLNSNKAL
Sbjct: 1   MDMATKFLRTLTNASNNKTLINVCLVVSFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 70  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPIS 106
           KK+MWDWKQQLFAEAS+ESALVPLARIKAIYGE PIS
Sbjct: 61  KKSMWDWKQQLFAEASSESALVPLARIKAIYGEVPIS 97

The following BLAST results are available for this feature:

BLAST of Cucsat.G8004 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G8004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151748.1	1.94e-60	94.39	uncharacterized protein LOC101219754 [Cucumis sativus] >KGN54811.2 hypothetical ...	[more]
XP_008444149.1	4.69e-52	88.89	PREDICTED: uncharacterized protein LOC103487583 [Cucumis melo]	[more]
XP_038897052.1	5.46e-51	85.86	uncharacterized protein LOC120085226 [Benincasa hispida]	[more]
XP_022976887.1	3.16e-50	81.82	uncharacterized protein LOC111477117 [Cucurbita maxima]	[more]
XP_022937146.1	1.05e-48	78.79	uncharacterized protein LOC111443531 [Cucurbita moschata] >XP_023536544.1 unchar...	[more]

BLAST of Cucsat.G8004 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L380	4.65e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G364020 PE=4 SV=1	[more]
A0A1S3B9R7	2.27e-52	88.89	uncharacterized protein LOC103487583 OS=Cucumis melo OX=3656 GN=LOC103487583 PE=...	[more]
A0A6J1IGY3	1.53e-50	81.82	uncharacterized protein LOC111477117 OS=Cucurbita maxima OX=3661 GN=LOC111477117...	[more]
A0A6J1F9J6	5.10e-49	78.79	uncharacterized protein LOC111443531 OS=Cucurbita moschata OX=3662 GN=LOC1114435...	[more]
A0A6J1CGB8	6.12e-48	82.47	uncharacterized protein LOC111011272 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 29..63
None	No IPR available	PANTHER	PTHR38355	OS06G0149500 PROTEIN	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G8004.T1	Cucsat.G8004.T1	mRNA
Cucsat.G8004.T2	Cucsat.G8004.T2	mRNA
Cucsat.G8004.T3	Cucsat.G8004.T3	mRNA
Cucsat.G8004.T5	Cucsat.G8004.T5	mRNA