Cucsat.G6105 (gene) Cucumber (B10) v3

Overview
NameCucsat.G6105
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationctg1425: 2401165 .. 2402019 (-)
RNA-Seq ExpressionCucsat.G6105
SyntenyCucsat.G6105
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCACCCCTAATGTGTAACTGATATATGAGAATTTAATTTACGTATGAGAGCAATCGAATTTAATTTAAATAGTTTAACTTTTGAATTTAATTAACTTCAAAATAAGCAGTTGAGGACTTTAATTTCTTCACCAAACAATATGAAAACGTCTTTCTATCACATTAATTGACACCACTTTGAATTCAAAAGATTTAAATGCACTATCTAAAAAACTATAGCGAATTGACTGATCAGCCACCTAGCATATATAGCGATCAAAAAGTCAATGATTTAAATCTCTCCACCCTATTGTACTACAATATATTGTTAGAGCTTTGGTGTACTTGGCTATATTTTTTCAATTGAAGTGTGGTTCGTGACTGTTGGATAACCTTGTTCTTCATCTTGTCTCATGAAATGTTTGTCATCTTGTTCTGTGATGTTTTACGCATCATGTCTAACATTATGCAATTCCTATTTGGAATTTTTTTCCTTATCTGAAAAATTATAGGTATTGATTCTTAAGTATTAATGTAAATACAATTACATTAGGCTAATTATATGACATTCCTTAATTATGTTGAATTAGCTATTTATACATCATTTGGTATTATTGTAAAAGACAGAAATTTCATCAATAGAATATACCTTTCACATTGTATCAGAGCCAACCCTAGATCTACTTTAATCACTGCCGTCGCCGCCGCCGCCGTCGTCGTCGCCGCCGCCGCCGCCCGAGAACCGCCGCGTCTTCCTTAACTCCAAGAAGCACTGCTAGCCGAAAAGTAGATCTCCGTCCCGTGCTAGCGTTTTTCTTCCACTGCTAGCCGAAAAGTTCAGCAGCTCATGGTATCAGCACGTCGCTCCGTCACAACCTAGGTGTCGCGCCACTCCGTCCAGTCGCAGCCTCGGCGTCGCGGCGTTCAAATCGTCGCGTCGTCCTCTCCGATCTGAAGCACCAGTCGTTGCCGAGTTGCAACAATCTCTGCCGTTCCAAGCCGCACGCAACTCCTCTGTCTTCCCAAGCCGCACGCGACTCCTCTGTCTTCCCAAGCCGCACGCGACTCCTCTTCCAGTCGTGAATCCAAGACGACACCGCCCACCAGATCCGACGAACCTTCTAGCCGACTGTCCTCATTCGTTTGTCTCCGCTCACAGCCGTAACCCCTCTGTCCGTAAGCCGTGACCCTCTGTCCATTGTTGCAACCCAGCCGCGAAGACAAATCCTGACCGCCGCGAAGACAAATCCTGACCGCCGCGAATCCAGTCGTGTCCTCGCCGTCGCAACTCAGCCGCGACCTAGACAAGAAGACGCTCACCTATCACGACTCCCAGCCTTACAAACCAATCAGCAATCCCAATTGCAAAATCCAGAATATGACGAATCCAGTCACGAATCAATAGAAAATTTTAGACGAATTCAGCCGGAAATTCTCATTGTTAACAGCGAATCCAAATGGAGAGGGACCATATTTTTAGACCCATAGGTACAATTCTTGATGGTACAAATTATATCACATGGGCAAATCAAATGAAAAGTTTTCTTATTGGAAGAAAACTATGGCGCATTGTAACTGGCGACATAACCAAACCAACTGCACAAGACAAGGACAAGGAAGGGGATAATAAATTCATTGAACGCCTCGAAGATTGGGACAGTAAAAATCATCAAATTATCACCTGGCTTGGTAACACCTCTATTCCCGCTATACATGCACAGTTTGATGCCTTTGATGATGCTAAAAACTTATGGGATTTTTTGTCTACACGCTTCAAGTCTATTGGTTTAGCTCATTATTATCAACTGCACAATCGCTTCAAGTCTATTGGTTTAGCTCGTTATTATCAACTGCACAATACACTTGTAAATCTCAATCAAGATATTGGTCAGTCTGTCAATGAATATTTGGCAGTTCTTCAACCCATTTGGACTCAGCTTGACCAAGCGAGCATCAGCAAAGAACATCTCCGCCTTATTAAAGTTCTTATGGGATTACGCCCAGAATATGAATCTGTTAGAGCTGCTTTACTACACCGGAATCCCTTACCCTCTTTAGATGCAGCTATTCAAGAAATTTTGTTTGAAGAAAAGCGTCTTGGCATCAATTCTACTAAACAATCTGATGTTGTCCTTGCCAGCACATACACTCCCAACAGAGCCTCAAATATGTTTTGTAAGAATTGTAAGCTCTCTGGTCACAAATTTATTAACTGTCCTAAAATAGAGTGCAGGTACTGCCATAAACATGGTCACATTCTGGATAACTGCCCTACCAGACCACCCCGACCTCCTGGCACTTCCACAAAAGAGAAAACTTTTACTAAACCTGGTTCCTCATCTGTTGTTGCTGCAACCTCGGATGATTCATCCCTCATTCAGATAAGTGATCTTCAGAGCTTATTGAATCAACTAATTTCATCATCCTCTGCCCTTGCTGTCTCATCAGGTGATCGATGGCTTCTTGATTCTGCCTGTTGTAATCATATGACCTCTGACTTTTCTCTTATGTCTACTTCTAGCCCTACAAAATCTTTACCTCCTATTTATGCTGTTGATGGTAATTGTATGAACATCTCTCATACTGGTATCATTGATACTCCCAGTTTACATCTTCCCCATACTTACTGTGTTCCTAACCTGACCTTTAATCTAGTGTCTGTTGGTCAATTATGTGATCTTGGCTTAAATGTTTCATTTTCTCCCAATGGTTGTCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGAACGGGTCGCAAAGTGGGAAGATTGTTTGAGCTCACATCACTTCGGGTTTCATCTCCCTCTTCCATCTCTGCTTCAGTCACTGATTCTGACACATATCAGTGGCATCTTCGTCTTGGTCATGCTTCTTCTGAAAAACTTCGTCATTTAATTTCTGCTAATAATTTGAACAATCTCACTAAGTTTGTTCCTTTTAATTGTTTGAATTGCAAACTTGCTAAACAACCTGCCTTGTCTTTTTCTCAATCCATCTCTAATTGTGATAAACCTTTTGATCTAGTGCATTCTGATATTTGGGGTCCTGCCCCAACTACTACTGTTCATGGTTATCGCTATTATGTTTTATTCATTGATGACTACTCTCGATTTACATGGATTTACTTTCTAAAACATCGTTCTGAATTATCTCGCACATATATTGAGTTTGCTAACATGATTCGCACTCAATTTTCCTCTCCCATCAAAATTCTTCGCACCGATAATGCTTTGGAATATAAAGATTCCATCCTTCTTTCTTTTCTTTCCCAACAGGGCACTATTGTTCAGCGCTCTTGCCCTCATACCTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTCCTTTTTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTTACATCAGTATATACAATCAATCGTCTCCCTTCTTCTGTTCTTCAAAACACCTCTCCATTTAAAAAACTATACGGTATCTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCATGCTTCGTTCTTTTACATCCTC

Coding sequence (CDS)

ATGATTCGCACTCAATTTTCCTCTCCCATCAAAATTCTTCGCACCGATAATGCTTTGGAATATAAAGATTCCATCCTTCTTTCTTTTCTTTCCCAACAGGGCACTATTGTTCAGCGCTCTTGCCCTCATACCTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTCCTTTTTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTTACATCAGTATATACAATCAATCGTCTCCCTTCTTCTGTTCTTCAAAACACCTCTCCATTTAAAAAACTATACGGTATCTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCATGCTTCGTTCTTTTACATCCT

Protein sequence

MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSACFVLLHP
Homology
[Close]
BLAST of Cucsat.G6105 vs. NCBI nr
Match: XP_031745067.1 (uncharacterized protein LOC116405245 [Cucumis sativus])

HSP 1 Score: 174 bits (441), Expect = 1.71e-48
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 20  VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHL 79
           VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHL
Sbjct: 292 VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHL 351

Query: 80  ISANNLNNLTKFVPFNCLNCKLAKQPAL 107
           IS NNL NLTKFVPFNCLNCKLAKQPAL
Sbjct: 352 ISVNNLTNLTKFVPFNCLNCKLAKQPAL 379

[Close]
BLAST of Cucsat.G6105 vs. NCBI nr
Match: KAA0066780.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK27927.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (400), Expect = 2.84e-44
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 20  VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHL 79
           VQDPQTGQ IGTGRKVGRLFEL SL+V SPSSISA VTDSDT QWHLRLGHAS EKLRHL
Sbjct: 167 VQDPQTGQPIGTGRKVGRLFELLSLQVPSPSSISAPVTDSDTNQWHLRLGHASPEKLRHL 226

Query: 80  ISANNLNNLTKFVPFNCLNCKLAKQPAL 107
           IS NNLNN+TKFVPFNCLNCKLAKQP L
Sbjct: 227 ISVNNLNNVTKFVPFNCLNCKLAKQPVL 254

[Close]
BLAST of Cucsat.G6105 vs. NCBI nr
Match: KAA0031710.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (406), Expect = 3.89e-43
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 20  VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHL 79
           VQDPQTGQTIGTGRKVGRLFEL SL+V SPSSISA VTDSDTYQWHLRLGHAS EKLRHL
Sbjct: 366 VQDPQTGQTIGTGRKVGRLFELLSLQVPSPSSISAPVTDSDTYQWHLRLGHASPEKLRHL 425

Query: 80  ISANNLNNLTKFVPFNCLNCKLAKQPAL 107
           IS N+LN+ TKFVPFNCLNCKLAKQPAL
Sbjct: 426 ISINHLNSTTKFVPFNCLNCKLAKQPAL 453

[Close]
BLAST of Cucsat.G6105 vs. NCBI nr
Match: TYK21532.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 3.40e-42
Identity = 82/105 (78.10%), Postives = 88/105 (83.81%), Query Frame = 0 

Query: 13  QICFVRI----------VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTY 72
           Q+C +R+          VQDPQTGQTIGTGRKVGRLFEL SL+V SPS ISA VTDSDTY
Sbjct: 230 QLCDLRLTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 289

Query: 73  QWHLRLGHASSEKLRHLISANNLNNLTKFVPFNCLNCKLAKQPAL 107
           QWHLRLGHAS EKLRHLIS NNLN++TKFVPFNCLNCKLAKQPAL
Sbjct: 290 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPAL 333

[Close]
BLAST of Cucsat.G6105 vs. NCBI nr
Match: TYK15021.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (398), Expect = 4.40e-42
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 20  VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHL 79
           VQDPQTGQTIGTGRKVGRLFEL SL+V SPS ISA VTDSDTYQWHLRLGHAS EKLRHL
Sbjct: 407 VQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTYQWHLRLGHASPEKLRHL 466

Query: 80  ISANNLNNLTKFVPFNCLNCKLAKQPAL 107
           IS NNLN++TKFVPFNCLNCKLAKQPAL
Sbjct: 467 ISINNLNSITKFVPFNCLNCKLAKQPAL 493

[Close]
BLAST of Cucsat.G6105 vs. ExPASy TrEMBL
Match: A0A5D3DVS8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001140 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 1.37e-44
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 20  VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHL 79
           VQDPQTGQ IGTGRKVGRLFEL SL+V SPSSISA VTDSDT QWHLRLGHAS EKLRHL
Sbjct: 167 VQDPQTGQPIGTGRKVGRLFELLSLQVPSPSSISAPVTDSDTNQWHLRLGHASPEKLRHL 226

Query: 80  ISANNLNNLTKFVPFNCLNCKLAKQPAL 107
           IS NNLNN+TKFVPFNCLNCKLAKQP L
Sbjct: 227 ISVNNLNNVTKFVPFNCLNCKLAKQPVL 254

[Close]
BLAST of Cucsat.G6105 vs. ExPASy TrEMBL
Match: A0A5A7SLT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004960 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 1.88e-43
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 20  VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHL 79
           VQDPQTGQTIGTGRKVGRLFEL SL+V SPSSISA VTDSDTYQWHLRLGHAS EKLRHL
Sbjct: 366 VQDPQTGQTIGTGRKVGRLFELLSLQVPSPSSISAPVTDSDTYQWHLRLGHASPEKLRHL 425

Query: 80  ISANNLNNLTKFVPFNCLNCKLAKQPAL 107
           IS N+LN+ TKFVPFNCLNCKLAKQPAL
Sbjct: 426 ISINHLNSTTKFVPFNCLNCKLAKQPAL 453

[Close]
BLAST of Cucsat.G6105 vs. ExPASy TrEMBL
Match: A0A5D3DD70 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00150 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 1.65e-42
Identity = 82/105 (78.10%), Postives = 88/105 (83.81%), Query Frame = 0 

Query: 13  QICFVRI----------VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTY 72
           Q+C +R+          VQDPQTGQTIGTGRKVGRLFEL SL+V SPS ISA VTDSDTY
Sbjct: 230 QLCDLRLTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 289

Query: 73  QWHLRLGHASSEKLRHLISANNLNNLTKFVPFNCLNCKLAKQPAL 107
           QWHLRLGHAS EKLRHLIS NNLN++TKFVPFNCLNCKLAKQPAL
Sbjct: 290 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPAL 333

[Close]
BLAST of Cucsat.G6105 vs. ExPASy TrEMBL
Match: A0A5D3CT53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00560 PE=4 SV=1)

HSP 1 Score: 157 bits (398), Expect = 2.13e-42
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 20  VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHL 79
           VQDPQTGQTIGTGRKVGRLFEL SL+V SPS ISA VTDSDTYQWHLRLGHAS EKLRHL
Sbjct: 407 VQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTYQWHLRLGHASPEKLRHL 466

Query: 80  ISANNLNNLTKFVPFNCLNCKLAKQPAL 107
           IS NNLN++TKFVPFNCLNCKLAKQPAL
Sbjct: 467 ISINNLNSITKFVPFNCLNCKLAKQPAL 493

[Close]
BLAST of Cucsat.G6105 vs. ExPASy TrEMBL
Match: A0A5A7SI12 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00670 PE=4 SV=1)

HSP 1 Score: 157 bits (398), Expect = 2.25e-42
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 20  VQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHL 79
           VQDPQTGQTIGTGRKVGRLFEL SL+V SPS ISA VTDSDTYQWHLRLGHAS EKLRHL
Sbjct: 344 VQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTYQWHLRLGHASPEKLRHL 403

Query: 80  ISANNLNNLTKFVPFNCLNCKLAKQPAL 107
           IS NNLN++TKFVPFNCLNCKLAKQPAL
Sbjct: 404 ISINNLNSITKFVPFNCLNCKLAKQPAL 430

The following BLAST results are available for this feature:
BLAST of Cucsat.G6105 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G6105 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031745067.11.71e-4897.73uncharacterized protein LOC116405245 [Cucumis sativus][more]
KAA0066780.12.84e-4488.64Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0031710.13.89e-4389.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK21532.13.40e-4278.10Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK15021.14.40e-4289.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of Cucsat.G6105 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DVS81.37e-4488.64Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7SLT81.88e-4389.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DD701.65e-4278.10Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CT532.13e-4289.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7SI122.25e-4289.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of Cucsat.G6105 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..117
e-value: 3.9E-21
score: 77.2
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..108
score: 13.302602
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G6105.T1Cucsat.G6105.T1mRNA
Cucsat.G6105.T2Cucsat.G6105.T2mRNA
Cucsat.G6105.T3Cucsat.G6105.T3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding