Cucsat.G6105.T1 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G6105.T1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	ctg1425: 2400585 .. 2404127 (-)
RNA-Seq Expression	Cucsat.G6105.T1
Synteny	Cucsat.G6105.T1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCACCCCTAATGTGTAACTGATATATGAGAATTTAATTTACGTATGAGAGCAATCGAATTTAATTTAAATAGTTTAACTTTTGAATTTAATTAACTTCAAAATAAGCAGTTGAGGACTTTAATTTCTTCACCAAACAATATGAAAACGTCTTTCTATCACATTAATTGACACCACTTTGAATTCAAAAGATTTAAATGCACTATCTAAAAAACTATAGCGAATTGACTGATCAGCCACCTAGCATATATAGCGATCAAAAAGTCAATGATTTAAATCTCTCCACCCTATTGTACTACAATATATTGTTAGAGCTTTGGTGTACTTGGCTATATTTTTTCAATTGAAGTGTGGTTCGTGACTGTTGGATAACCTTGTTCTTCATCTTGTCTCATGAAATGTTTGTCATCTTGTTCTGTGATGTTTTACGCATCATGTCTAACATTATGCAATTCCTATTTGGAATTTTTTTCCTTATCTGAAAAATTATAGGTATTGATTCTTAAGTATTAATGTAAATACAATTACATTAGGCTAATTATATGACATTCCTTAATTATGTTGAATTAGCTATTTATACATCATTTGGTATTATTGTAAAAGACAGAAATTTCATCAATAGAATATACCTTTCACATTGTATCAGAGCCAACCCTAGATCTACTTTAATCACTGCCGTCGCCGCCGCCGCCGTCGTCGTCGCCGCCGCCGCCGCCCGAGAACCGCCGCGTCTTCCTTAACTCCAAGAAGCACTGCTAGCCGAAAAGTAGATCTCCGTCCCGTGCTAGCGTTTTTCTTCCACTGCTAGCCGAAAAGTTCAGCAGCTCATGGTATCAGCACGTCGCTCCGTCACAACCTAGGTGTCGCGCCACTCCGTCCAGTCGCAGCCTCGGCGTCGCGGCGTTCAAATCGTCGCGTCGTCCTCTCCGATCTGAAGCACCAGTCGTTGCCGAGTTGCAACAATCTCTGCCGTTCCAAGCCGCACGCAACTCCTCTGTCTTCCCAAGCCGCACGCGACTCCTCTGTCTTCCCAAGCCGCACGCGACTCCTCTTCCAGTCGTGAATCCAAGACGACACCGCCCACCAGATCCGACGAACCTTCTAGCCGACTGTCCTCATTCGTTTGTCTCCGCTCACAGCCGTAACCCCTCTGTCCGTAAGCCGTGACCCTCTGTCCATTGTTGCAACCCAGCCGCGAAGACAAATCCTGACCGCCGCGAAGACAAATCCTGACCGCCGCGAATCCAGTCGTGTCCTCGCCGTCGCAACTCAGCCGCGACCTAGACAAGAAGACGCTCACCTATCACGACTCCCAGCCTTACAAACCAATCAGCAATCCCAATTGCAAAATCCAGAATATGACGAATCCAGTCACGAATCAATAGAAAATTTTAGACGAATTCAGCCGGAAATTCTCATTGTTAACAGCGAATCCAAATGGAGAGGGACCATATTTTTAGACCCATAGGTACAATTCTTGATGGTACAAATTATATCACATGGGCAAATCAAATGAAAAGTTTTCTTATTGGAAGAAAACTATGGCGCATTGTAACTGGCGACATAACCAAACCAACTGCACAAGACAAGGACAAGGAAGGGGATAATAAATTCATTGAACGCCTCGAAGATTGGGACAGTAAAAATCATCAAATTATCACCTGGCTTGGTAACACCTCTATTCCCGCTATACATGCACAGTTTGATGCCTTTGATGATGCTAAAAACTTATGGGATTTTTTGTCTACACGCTTCAAGTCTATTGGTTTAGCTCATTATTATCAACTGCACAATCGCTTCAAGTCTATTGGTTTAGCTCGTTATTATCAACTGCACAATACACTTGTAAATCTCAATCAAGATATTGGTCAGTCTGTCAATGAATATTTGGCAGTTCTTCAACCCATTTGGACTCAGCTTGACCAAGCGAGCATCAGCAAAGAACATCTCCGCCTTATTAAAGTTCTTATGGGATTACGCCCAGAATATGAATCTGTTAGAGCTGCTTTACTACACCGGAATCCCTTACCCTCTTTAGATGCAGCTATTCAAGAAATTTTGTTTGAAGAAAAGCGTCTTGGCATCAATTCTACTAAACAATCTGATGTTGTCCTTGCCAGCACATACACTCCCAACAGAGCCTCAAATATGTTTTGTAAGAATTGTAAGCTCTCTGGTCACAAATTTATTAACTGTCCTAAAATAGAGTGCAGGTACTGCCATAAACATGGTCACATTCTGGATAACTGCCCTACCAGACCACCCCGACCTCCTGGCACTTCCACAAAAGAGAAAACTTTTACTAAACCTGGTTCCTCATCTGTTGTTGCTGCAACCTCGGATGATTCATCCCTCATTCAGATAAGTGATCTTCAGAGCTTATTGAATCAACTAATTTCATCATCCTCTGCCCTTGCTGTCTCATCAGGTGATCGATGGCTTCTTGATTCTGCCTGTTGTAATCATATGACCTCTGACTTTTCTCTTATGTCTACTTCTAGCCCTACAAAATCTTTACCTCCTATTTATGCTGTTGATGGTAATTGTATGAACATCTCTCATACTGGTATCATTGATACTCCCAGTTTACATCTTCCCCATACTTACTGTGTTCCTAACCTGACCTTTAATCTAGTGTCTGTTGGTCAATTATGTGATCTTGGCTTAAATGTTTCATTTTCTCCCAATGGTTGTCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGAACGGGTCGCAAAGTGGGAAGATTGTTTGAGCTCACATCACTTCGGGTTTCATCTCCCTCTTCCATCTCTGCTTCAGTCACTGATTCTGACACATATCAGTGGCATCTTCGTCTTGGTCATGCTTCTTCTGAAAAACTTCGTCATTTAATTTCTGCTAATAATTTGAACAATCTCACTAAGTTTGTTCCTTTTAATTGTTTGAATTGCAAACTTGCTAAACAACCTGCCTTGTCTTTTTCTCAATCCATCTCTAATTGTGATAAACCTTTTGATCTAGTGCATTCTGATATTTGGGGTCCTGCCCCAACTACTACTGTTCATGGTTATCGCTATTATGTTTTATTCATTGATGACTACTCTCGATTTACATGGATTTACTTTCTAAAACATCGTTCTGAATTATCTCGCACATATATTGAGTTTGCTAACATGATTCGCACTCAATTTTCCTCTCCCATCAAAATTCTTCGCACCGATAATGCTTTGGAATATAAAGATTCCATCCTTCTTTCTTTTCTTTCCCAACAGGGCACTATTGTTCAGCGCTCTTGCCCTCATACCTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTCCTTTTTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTTACATCAGTATATACAATCAATCGTCTCCCTTCTTCTGTTCTTCAAAACACCTCTCCATTTAAAAAACTATACGGTATCTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCATGCTTCGTTCTTTTACATCCTC

Coding sequence (CDS)

ATGATTCGCACTCAATTTTCCTCTCCCATCAAAATTCTTCGCACCGATAATGCTTTGGAATATAAAGATTCCATCCTTCTTTCTTTTCTTTCCCAACAGGGCACTATTGTTCAGCGCTCTTGCCCTCATACCTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTCCTTTTTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTTACATCAGTATATACAATCAATCGTCTCCCTTCTTCTGTTCTTCAAAACACCTCTCCATTTAAAAAACTATACGGTATCTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCATGCTTCGTTCTTTTACATCCT

Protein sequence

MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSACFVLLHP

Homology

[Close]

BLAST of Cucsat.G6105.T1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-23
Identity = 58/127 (45.67%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           ++  +F + I  L +DN  E+   +L  +LSQ G     S PHT + NG  ERKHRHI++
Sbjct: 556 LVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVE 615

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
               LL  AS P+ +W  A   +VY INRLP+ +LQ  SPF+KL+G  P+Y KLKVFG A
Sbjct: 616 MGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCA 675

Query: 121 CFVLLHP 128
           C+  L P
Sbjct: 676 CYPWLRP 680

[Close]

BLAST of Cucsat.G6105.T1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.2e-23
Identity = 56/127 (44.09%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           ++  +F + I    +DN  E+    L  + SQ G     S PHT + NG  ERKHRHI++
Sbjct: 577 LLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVE 636

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           +   LL  AS P+ +W  A   +VY INRLP+ +LQ  SPF+KL+G SP+Y KL+VFG A
Sbjct: 637 TGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCA 696

Query: 121 CFVLLHP 128
           C+  L P
Sbjct: 697 CYPWLRP 701

[Close]

BLAST of Cucsat.G6105.T1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-13
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 6   FSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRAL 65
           F+  +  L  DN  EY  + +  F  ++G     + PHT Q NG  ER  R I +  R +
Sbjct: 540 FNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTM 599

Query: 66  LLFASCPEKFWGEAALTSVYTINRLPSSVLQNTS--PFKKLYGISPDYSKLKVFGSACFV 124
           +  A   + FWGEA LT+ Y INR+PS  L ++S  P++  +   P    L+VFG+  +V
Sbjct: 600 VSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYV 659

[Close]

BLAST of Cucsat.G6105.T1 vs. NCBI nr
Match: XP_031745067.1 (uncharacterized protein LOC116405245 [Cucumis sativus])

HSP 1 Score: 252 bits (643), Expect = 1.82e-77
Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGR ERKHRHILD
Sbjct: 446 MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILD 505

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQNTSPF+KLYGISPDYSKLKVFGSA
Sbjct: 506 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGSA 565

Query: 121 CFVLLHP 127
           CFVLLHP
Sbjct: 566 CFVLLHP 572

[Close]

BLAST of Cucsat.G6105.T1 vs. NCBI nr
Match: KAA0064888.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 231 bits (590), Expect = 4.29e-69
Identity = 113/127 (88.98%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 1   MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 60

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF+KLYG  P+YS LK FG A
Sbjct: 61  SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGYA 120

Query: 121 CFVLLHP 127
           CFVLLHP
Sbjct: 121 CFVLLHP 127

[Close]

BLAST of Cucsat.G6105.T1 vs. NCBI nr
Match: TYK15021.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (595), Expect = 5.07e-69
Identity = 114/127 (89.76%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 560 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 619

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF+KLYG  P+YS LKVFG A
Sbjct: 620 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKVFGCA 679

Query: 121 CFVLLHP 127
           CFVLLHP
Sbjct: 680 CFVLLHP 686

[Close]

BLAST of Cucsat.G6105.T1 vs. NCBI nr
Match: TYK03707.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 229 bits (583), Expect = 1.50e-67
Identity = 111/127 (87.40%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 231 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 290

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRA LL ASCPEKFWGEAALTSVYTIN LPSSVLQN SPF++LYG  P+YS LKVFG A
Sbjct: 291 SVRAFLLSASCPEKFWGEAALTSVYTINHLPSSVLQNISPFERLYGTPPNYSNLKVFGCA 350

Query: 121 CFVLLHP 127
           CFVLLHP
Sbjct: 351 CFVLLHP 357

[Close]

BLAST of Cucsat.G6105.T1 vs. NCBI nr
Match: KAA0037551.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03121.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 228 bits (581), Expect = 5.36e-67
Identity = 111/127 (87.40%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR +RKHRHILD
Sbjct: 299 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAKRKHRHILD 358

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL  SCPEKFWGEAALTSVYTINRLPSSVLQN SPF+KLYG  P+YS LK FG A
Sbjct: 359 SVRALLLSDSCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGCA 418

Query: 121 CFVLLHP 127
           CFVLLHP
Sbjct: 419 CFVLLHP 425

[Close]

BLAST of Cucsat.G6105.T1 vs. ExPASy TrEMBL
Match: A0A5A7VBA1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002020 PE=4 SV=1)

HSP 1 Score: 231 bits (590), Expect = 2.08e-69
Identity = 113/127 (88.98%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 1   MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 60

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF+KLYG  P+YS LK FG A
Sbjct: 61  SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGYA 120

Query: 121 CFVLLHP 127
           CFVLLHP
Sbjct: 121 CFVLLHP 127

[Close]

BLAST of Cucsat.G6105.T1 vs. ExPASy TrEMBL
Match: A0A5D3CT53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00560 PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 2.45e-69
Identity = 114/127 (89.76%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 560 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 619

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF+KLYG  P+YS LKVFG A
Sbjct: 620 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKVFGCA 679

Query: 121 CFVLLHP 127
           CFVLLHP
Sbjct: 680 CFVLLHP 686

[Close]

BLAST of Cucsat.G6105.T1 vs. ExPASy TrEMBL
Match: A0A5D3BW28 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00740 PE=4 SV=1)

HSP 1 Score: 229 bits (583), Expect = 7.26e-68
Identity = 111/127 (87.40%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 231 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 290

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRA LL ASCPEKFWGEAALTSVYTIN LPSSVLQN SPF++LYG  P+YS LKVFG A
Sbjct: 291 SVRAFLLSASCPEKFWGEAALTSVYTINHLPSSVLQNISPFERLYGTPPNYSNLKVFGCA 350

Query: 121 CFVLLHP 127
           CFVLLHP
Sbjct: 351 CFVLLHP 357

[Close]

BLAST of Cucsat.G6105.T1 vs. ExPASy TrEMBL
Match: A0A5D3BTS2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00580 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 2.60e-67
Identity = 111/127 (87.40%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR +RKHRHILD
Sbjct: 299 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAKRKHRHILD 358

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL  SCPEKFWGEAALTSVYTINRLPSSVLQN SPF+KLYG  P+YS LK FG A
Sbjct: 359 SVRALLLSDSCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGCA 418

Query: 121 CFVLLHP 127
           CFVLLHP
Sbjct: 419 CFVLLHP 425

[Close]

BLAST of Cucsat.G6105.T1 vs. ExPASy TrEMBL
Match: A0A5A7SI12 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00670 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 3.93e-67
Identity = 112/127 (88.19%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 497 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 556

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF++LYG  P+YS LKVFG A
Sbjct: 557 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCA 616

Query: 121 CFVLLHP 127
           CFVLL P
Sbjct: 617 CFVLLQP 623

The following BLAST results are available for this feature:

BLAST of Cucsat.G6105.T1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.4e-23	45.67	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.2e-23	44.09	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.3e-13	35.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cucsat.G6105.T1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745067.1	1.82e-77	97.64	uncharacterized protein LOC116405245 [Cucumis sativus]	[more]
KAA0064888.1	4.29e-69	88.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK15021.1	5.07e-69	89.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK03707.1	1.50e-67	87.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0037551.1	5.36e-67	87.40	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03121.1 putative m...	[more]

BLAST of Cucsat.G6105.T1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBA1	2.08e-69	88.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CT53	2.45e-69	89.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BW28	7.26e-68	87.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BTS2	2.60e-67	87.40	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7SI12	3.93e-67	88.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cucsat.G6105.T1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..117 e-value: 3.9E-21 score: 77.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..108 score: 13.302602
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G6105	Cucsat.G6105	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G6105.T1.E1	Cucsat.G6105.T1.E1	exon
Cucsat.G6105.T1.E2	Cucsat.G6105.T1.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G6105.T1.C1	Cucsat.G6105.T1.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G6105.T1	Cucsat.G6105.T1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0008270	zinc ion binding