Cucsat.G6105.T2 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G6105.T2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	ctg1425: 2400603 .. 2402927 (-)
RNA-Seq Expression	Cucsat.G6105.T2
Synteny	Cucsat.G6105.T2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACAAATCCTGACCGCCGCGAAGACAAATCCTGACCGCCGCGAATCCAGTCGTGTCCTCGCCGTCGCAACTCAGCCGCGACCTAGACAAGAAGACGCTCACCTATCACGACTCCCAGCCTTACAAACCAATCAGCAATCCCAATTGCAAAATCCAGAATATGACGAATCCAGTCACGAATCAATAGAAAATTTTAGACGAATTCAGCCGGAAATTCTCATTGTTAACAGCGAATCCAAATGGAGAGGGACCATATTTTTAGACCCATAGGTACAATTCTTGATGGTACAAATTATATCACATGGGCAAATCAAATGAAAAGTTTTCTTATTGGAAGAAAACTATGGCGCATTGTAACTGGCGACATAACCAAACCAACTGCACAAGACAAGGACAAGGAAGGGGATAATAAATTCATTGAACGCCTCGAAGATTGGGACAGTAAAAATCATCAAATTATCACCTGGCTTGGTAACACCTCTATTCCCGCTATACATGCACAGTTTGATGCCTTTGATGATGCTAAAAACTTATGGGATTTTTTGTCTACACGCTTCAAGTCTATTGGTTTAGCTCATTATTATCAACTGCACAATCGCTTCAAGTCTATTGGTTTAGCTCGTTATTATCAACTGCACAATACACTTGTAAATCTCAATCAAGATATTGGTCAGTCTGTCAATGAATATTTGGCAGTTCTTCAACCCATTTGGACTCAGCTTGACCAAGCGAGCATCAGCAAAGAACATCTCCGCCTTATTAAAGTTCTTATGGGATTACGCCCAGAATATGAATCTGTTAGAGCTGCTTTACTACACCGGAATCCCTTACCCTCTTTAGATGCAGCTATTCAAGAAATTTTGTTTGAAGAAAAGCGTCTTGGCATCAATTCTACTAAACAATCTGATGTTGTCCTTGCCAGCACATACACTCCCAACAGAGCCTCAAATATGTTTTGTAAGAATTGTAAGCTCTCTGGTCACAAATTTATTAACTGTCCTAAAATAGAGTGCAGGTACTGCCATAAACATGGTCACATTCTGGATAACTGCCCTACCAGACCACCCCGACCTCCTGGCACTTCCACAAAAGAGAAAACTTTTACTAAACCTGGTTCCTCATCTGTTGTTGCTGCAACCTCGGATGATTCATCCCTCATTCAGATAAGTGATCTTCAGAGCTTATTGAATCAACTAATTTCATCATCCTCTGCCCTTGCTGTCTCATCAGGTGATCGATGGCTTCTTGATTCTGCCTGTTGTAATCATATGACCTCTGACTTTTCTCTTATGTCTACTTCTAGCCCTACAAAATCTTTACCTCCTATTTATGCTGTTGATGGTAATTGTATGAACATCTCTCATACTGGTATCATTGATACTCCCAGTTTACATCTTCCCCATACTTACTGTGTTCCTAACCTGACCTTTAATCTAGTGTCTGTTGGTCAATTATGTGATCTTGGCTTAAATGTTTCATTTTCTCCCAATGGTTGTCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGAACGGGTCGCAAAGTGGGAAGATTGTTTGAGCTCACATCACTTCGGGTTTCATCTCCCTCTTCCATCTCTGCTTCAGTCACTGATTCTGACACATATCAGTGGCATCTTCGTCTTGGTCATGCTTCTTCTGAAAAACTTCGTCATTTAATTTCTGCTAATAATTTGAACAATCTCACTAAGTTTGTTCCTTTTAATTGTTTGAATTGCAAACTTGCTAAACAACCTGCCTTGTCTTTTTCTCAATCCATCTCTAATTGTGATAAACCTTTTGATCTAGTGCATTCTGATATTTGGGGTCCTGCCCCAACTACTACTGTTCATGGTTATCGCTATTATGTTTTATTCATTGATGACTACTCTCGATTTACATGGATTTACTTTCTAAAACATCGTTCTGAATTATCTCGCACATATATTGAGTTTGCTAACATGATTCGCACTCAATTTTCCTCTCCCATCAAAATTCTTCGCACCGATAATGCTTTGGAATATAAAGATTCCATCCTTCTTTCTTTTCTTTCCCAACAGGGCACTATTGTTCAGCGCTCTTGCCCTCATACCTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTCCTTTTTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTTACATCAGTATATACAATCAATCGTCTCCCTTCTTCTGTTCTTCAAAACACCTCTCCATTTAAAAAACTATACGGTATCTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCATGCT

Coding sequence (CDS)

ATGATTCGCACTCAATTTTCCTCTCCCATCAAAATTCTTCGCACCGATAATGCTTTGGAATATAAAGATTCCATCCTTCTTTCTTTTCTTTCCCAACAGGGCACTATTGTTCAGCGCTCTTGCCCTCATACCTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTCCTTTTTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTTACATCAGTATATACAATCAATCGTCTCCCTTCTTCTGTTCTTCAAAACACCTCTCCATTTAAAAAACTATACGGTATCTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCATGC

Protein sequence

MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSAC

Homology

[Close]

BLAST of Cucsat.G6105.T2 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-22
Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           ++  +F + I  L +DN  E+   +L  +LSQ G     S PHT + NG  ERKHRHI++
Sbjct: 556 LVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVE 615

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
               LL  AS P+ +W  A   +VY INRLP+ +LQ  SPF+KL+G  P+Y KLKVFG A
Sbjct: 616 MGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCA 674

Query: 121 C 122
           C
Sbjct: 676 C 674

[Close]

BLAST of Cucsat.G6105.T2 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.2e-22
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           ++  +F + I    +DN  E+    L  + SQ G     S PHT + NG  ERKHRHI++
Sbjct: 577 LLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVE 636

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           +   LL  AS P+ +W  A   +VY INRLP+ +LQ  SPF+KL+G SP+Y KL+VFG A
Sbjct: 637 TGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCA 695

Query: 121 C 122
           C
Sbjct: 697 C 695

[Close]

BLAST of Cucsat.G6105.T2 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-13
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 6   FSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRAL 65
           F+  +  L  DN  EY  + +  F  ++G     + PHT Q NG  ER  R I +  R +
Sbjct: 540 FNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTM 599

Query: 66  LLFASCPEKFWGEAALTSVYTINRLPSSVLQNTS--PFKKLYGISPDYSKLKVFGS 120
           +  A   + FWGEA LT+ Y INR+PS  L ++S  P++  +   P    L+VFG+
Sbjct: 600 VSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGA 655

[Close]

BLAST of Cucsat.G6105.T2 vs. NCBI nr
Match: XP_031745067.1 (uncharacterized protein LOC116405245 [Cucumis sativus])

HSP 1 Score: 238 bits (608), Expect = 2.00e-72
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGR ERKHRHILD
Sbjct: 446 MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILD 505

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQNTSPF+KLYGISPDYSKLKVFGSA
Sbjct: 506 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGSA 565

[Close]

BLAST of Cucsat.G6105.T2 vs. NCBI nr
Match: TYK15021.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (560), Expect = 3.51e-64
Identity = 108/121 (89.26%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 560 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 619

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF+KLYG  P+YS LKVFG A
Sbjct: 620 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKVFGCA 679

[Close]

BLAST of Cucsat.G6105.T2 vs. NCBI nr
Match: KAA0064888.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (555), Expect = 3.80e-64
Identity = 107/121 (88.43%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 1   MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 60

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF+KLYG  P+YS LK FG A
Sbjct: 61  SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGYA 120

[Close]

BLAST of Cucsat.G6105.T2 vs. NCBI nr
Match: KAA0025466.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (557), Expect = 2.93e-63
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 497 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 556

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF++LYG  P+YS LKVFG A
Sbjct: 557 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCA 616

[Close]

BLAST of Cucsat.G6105.T2 vs. NCBI nr
Match: TYK19656.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (557), Expect = 3.06e-63
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 560 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 619

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF++LYG  P+YS LKVFG A
Sbjct: 620 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCA 679

[Close]

BLAST of Cucsat.G6105.T2 vs. ExPASy TrEMBL
Match: A0A5D3CT53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00560 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 1.70e-64
Identity = 108/121 (89.26%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 560 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 619

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF+KLYG  P+YS LKVFG A
Sbjct: 620 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKVFGCA 679

[Close]

BLAST of Cucsat.G6105.T2 vs. ExPASy TrEMBL
Match: A0A5A7VBA1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002020 PE=4 SV=1)

HSP 1 Score: 218 bits (555), Expect = 1.84e-64
Identity = 107/121 (88.43%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 1   MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 60

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF+KLYG  P+YS LK FG A
Sbjct: 61  SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGYA 120

[Close]

BLAST of Cucsat.G6105.T2 vs. ExPASy TrEMBL
Match: A0A5A7SI12 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00670 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 1.42e-63
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 497 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 556

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF++LYG  P+YS LKVFG A
Sbjct: 557 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCA 616

[Close]

BLAST of Cucsat.G6105.T2 vs. ExPASy TrEMBL
Match: A0A5D3D7V8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00480 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 1.48e-63
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 560 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 619

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF++LYG  P+YS LKVFG A
Sbjct: 620 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCA 679

[Close]

BLAST of Cucsat.G6105.T2 vs. ExPASy TrEMBL
Match: A0A5D3DT06 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00190 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 1.48e-63
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILD 60
           MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILD
Sbjct: 560 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 619

Query: 61  SVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPDYSKLKVFGSA 120
           SVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SPF++LYG  P+YS LKVFG A
Sbjct: 620 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCA 679

The following BLAST results are available for this feature:

BLAST of Cucsat.G6105.T2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.9e-22	46.28	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	7.2e-22	44.63	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	6.1e-13	35.34	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cucsat.G6105.T2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745067.1	2.00e-72	97.52	uncharacterized protein LOC116405245 [Cucumis sativus]	[more]
TYK15021.1	3.51e-64	89.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0064888.1	3.80e-64	88.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0025466.1	2.93e-63	88.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK19656.1	3.06e-63	88.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cucsat.G6105.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CT53	1.70e-64	89.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VBA1	1.84e-64	88.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SI12	1.42e-63	88.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D7V8	1.48e-63	88.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DT06	1.48e-63	88.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cucsat.G6105.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..116 e-value: 3.4E-21 score: 77.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..108 score: 13.302602
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G6105	Cucsat.G6105	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G6105.T2.E1	Cucsat.G6105.T2.E1	exon
Cucsat.G6105.T2.E2	Cucsat.G6105.T2.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G6105.T2.C1	Cucsat.G6105.T2.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G6105.T2	Cucsat.G6105.T2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0008270	zinc ion binding