Cucsat.G5932 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G5932
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Regulator of Vps4 activity in the MVB pathway protein
Location	ctg1402: 2617176 .. 2618907 (-)
RNA-Seq Expression	Cucsat.G5932
Synteny	Cucsat.G5932

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAACTCTCCCACCACCACCGTGCTTTACTTCGAGTACGTTTCTCTTCTCTTCTTTTCATTTCCCATTTCAATTTCATTTTATTCATTTCTTTTCTGTTTTTTCATTCATAGGTCGAGAAAGTCATCAAGGATCAGAATGCTCTGGATGCTTATGTTTTAATTGAAGGCTACCTTAATCTCTTGCTTGAAAGAACCACTCTCCTCGAACAACAAAGGTTTGTTTTCTTATTCATCTCTCCTCTACCCTCCTTCTTAATCATTTGATTTGATTTTACTTATTATTATTTGTTTTTATTGCAGTGAGTGCCCTGAAGAATTGAAAGAGGCAGTTGCTGGGTTACTCTTTGCAGCTTCAAGATGTGGGGATTTCCCTGAACTTCATGAGATCAAATCAGTTTTGACCACTCGTTTTGGCAAGGAATTCACTGCACGTGCTGTTGAATTACGCAACAATTGTGGAGTTAATCTTTCGGTAAATTTTGGGTTCTCTTCATTAACTCCTGCTTCATTCCTTTCTTTTATTCATTCTTTGCTCTCTCTCTGTAGTTAATGCAAAAACTTTCCACAAGGCAGCCCACTTTGGAAACTAGAATGGACGCCCTCAAATCCATTGCTTCCGAGAATGGGATTGTATTGCAAATTGACCAACTCCCTTCTTCCAAACAGGTATACAACTTGAACTTTGACATTTTATTTTACTGCTTACAGCTGTGTTTTGGTAGCAGAGTCGAAACCCGAAATCTTCAATCTTTGTAAAACCCAATTTGGGATTCTTTTTCTGATTATCGCAGGAAAAAGTAGGCAGAAACGGGAGGCAAAGCGAGGCAGAGGGACAGAGTGAAGAATTTTCAAATGAAGTGGCATCTGGTTCAAAAACAACGTACAAAGATGTGGCGGATGCAGCACAAGCCGCTTTTGAATCAGCAGCTCAAGCAGCAGCAGCTGCACGAGCTGCCATGGAGCTCTCCCGACCCCATGAGGGTCCAAGCAGCCCGAGTAAGCCTGGGTCTGGAACAACTTCAGATAACAAACAAAAGAAAGAGAAAAGAGAGGTTGAATCTAAAGTAAAACAAGAAATGGAGGAATATGGAAATGGGAGGAAAGGAGAAGGAGAAAGGGAAGAAGAAGAAGGGGATGGAATGGATGAGGAGAGAACTTTAAATGGGTTGAAGATGGAAACAAAGGTAGAGAAAACAGAGGTAAGTGAGAAGGGAAGCTTTCGTTTAAATCTGGAGAAGAAACCAATTTCAGTAAGAACAAGAAGAGTAGGAGGATACTGAAGAAGAACAATATATAAGTGGTTCGTAATTGGGTTTGCTTTTGAATTCTTTCATCATATGTGTAATACATTTTTTGGTTTGTGGGAATATAATGGAAATTGTGTAGTTGTGTGGGTTGGGAATTCTGGTATCGTATGGTAAATACAACATTTTTGTTTGTTAGACAATGGTATATTCACATTAATATTTGACGACCACTTTTTTTGTTTTGAACTCCAAATTATTCAATCAACTTC

Coding sequence (CDS)

ATGCAAAAACTTTCCACAAGGCAGCCCACTTTGGAAACTAGAATGGACGCCCTCAAATCCATTGCTTCCGAGAATGGGATTGTATTGCAAATTGACCAACTCCCTTCTTCCAAACAGGAAAAAGTAGGCAGAAACGGGAGGCAAAGCGAGGCAGAGGGACAGAGTGAAGAATTTTCAAATGAAGTGGCATCTGGTTCAAAAACAACGTACAAAGATGTGGCGGATGCAGCACAAGCCGCTTTTGAATCAGCAGCTCAAGCAGCAGCAGCTGCACGAGCTGCCATGGAGCTCTCCCGACCCCATGAGGGTCCAAGCAGCCCGAGTAAGCCTGGGTCTGGAACAACTTCAGATAACAAACAAAAGAAAGAGAAAAGAGAGGTTGAATCTAAAGTAAAACAAGAAATGGAGGAATATGGAAATGGGAGGAAAGGAGAAGGAGAAAGGGAAGAAGAAGAAGGGGATGGAATGGATGAGGAGAGAACTTTAAATGGGTTGAAGATGGAAACAAAGGTAGAGAAAACAGAGGTAAGTGAGAAGGGAAGCTTTCGTTTAAATCTGGAGAAGAAACCAATTTCAGTAAGAACAAGAAGAGTAGGAGGATACTGA

Protein sequence

MQKLSTRQPTLETRMDALKSIASENGIVLQIDQLPSSKQEKVGRNGRQSEAEGQSEEFSNEVASGSKTTYKDVADAAQAAFESAAQAAAAARAAMELSRPHEGPSSPSKPGSGTTSDNKQKKEKREVESKVKQEMEEYGNGRKGEGEREEEEGDGMDEERTLNGLKMETKVEKTEVSEKGSFRLNLEKKPISVRTRRVGGY

Homology

[Close]

BLAST of Cucsat.G5932 vs. ExPASy Swiss-Prot
Match: P53990 (IST1 homolog OS=Homo sapiens OX=9606 GN=IST1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 26/90 (28.89%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 8  LLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRALLRVEKVI 67
          +LG  F+A + R  L L ++RL +L  ++     +A  ++   L      RA +RVE +I
Sbjct: 1  MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query: 68 KDQNALDAYVLIEGYLNLLLERTTLLEQQR 98
          ++   ++A  ++E Y +LLL R  L++  +
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMK 90

[Close]

BLAST of Cucsat.G5932 vs. ExPASy Swiss-Prot
Match: Q9CX00 (IST1 homolog OS=Mus musculus OX=10090 GN=Ist1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 26/90 (28.89%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 8  LLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRALLRVEKVI 67
          +LG  F+A + R  L L ++RL +L  ++     +A  ++   L      RA +RVE +I
Sbjct: 1  MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query: 68 KDQNALDAYVLIEGYLNLLLERTTLLEQQR 98
          ++   ++A  ++E Y +LLL R  L++  +
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMK 90

[Close]

BLAST of Cucsat.G5932 vs. ExPASy Swiss-Prot
Match: Q5R6G8 (IST1 homolog OS=Pongo abelii OX=9601 GN=IST1 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 26/90 (28.89%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 8  LLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRALLRVEKVI 67
          +LG  F+A + R  L L ++RL +L  ++     +A  ++   L      RA +RVE +I
Sbjct: 1  MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query: 68 KDQNALDAYVLIEGYLNLLLERTTLLEQQR 98
          ++   ++A  ++E Y +LLL R  L++  +
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMK 90

[Close]

BLAST of Cucsat.G5932 vs. ExPASy Swiss-Prot
Match: Q568Z6 (IST1 homolog OS=Rattus norvegicus OX=10116 GN=Ist1 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 26/90 (28.89%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 8  LLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRALLRVEKVI 67
          +LG  F+A + R  L L ++RL +L  ++     +A  ++   L      RA +RVE +I
Sbjct: 1  MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query: 68 KDQNALDAYVLIEGYLNLLLERTTLLEQQR 98
          ++   ++A  ++E Y +LLL R  L++  +
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMK 90

[Close]

BLAST of Cucsat.G5932 vs. ExPASy Swiss-Prot
Match: Q3ZBV1 (IST1 homolog OS=Bos taurus OX=9913 GN=IST1 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.2e-04
Identity = 25/90 (27.78%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 8  LLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRALLRVEKVI 67
          +LG   +A + R  L L ++RL +L  ++     +A  ++   L      RA +RVE +I
Sbjct: 1  MLGSGIKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query: 68 KDQNALDAYVLIEGYLNLLLERTTLLEQQR 98
          ++   ++A  ++E Y +LLL R  L++  +
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMK 90

[Close]

BLAST of Cucsat.G5932 vs. NCBI nr
Match: XP_011656519.1 (uncharacterized protein LOC101211044 [Cucumis sativus] >KGN45949.1 hypothetical protein Csa_005294 [Cucumis sativus])

HSP 1 Score: 182 bits (463), Expect = 3.54e-54
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL
Sbjct: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ 96
          LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ
Sbjct: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ 96

[Close]

BLAST of Cucsat.G5932 vs. NCBI nr
Match: XP_008445650.1 (PREDICTED: uncharacterized protein LOC103488606 [Cucumis melo])

HSP 1 Score: 177 bits (449), Expect = 2.36e-52
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MGRKLDALLGRNFRASKFRPLLNLSLSRLSILT+QRR+ CSQANSDVLQLLQLSHHHRAL
Sbjct: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTSQRRLRCSQANSDVLQLLQLSHHHRAL 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ 96
          LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ
Sbjct: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ 96

[Close]

BLAST of Cucsat.G5932 vs. NCBI nr
Match: XP_038884116.1 (uncharacterized protein LOC120075040 [Benincasa hispida])

HSP 1 Score: 174 bits (440), Expect = 1.43e-50
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MGRKLDALLGRNFRASKFRPLLNL+LSRLSILTAQRRV CSQANSDVLQLLQL +HHRAL
Sbjct: 1  MGRKLDALLGRNFRASKFRPLLNLALSRLSILTAQRRVRCSQANSDVLQLLQLPNHHRAL 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ 96
          LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ
Sbjct: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ 96

[Close]

BLAST of Cucsat.G5932 vs. NCBI nr
Match: XP_022139373.1 (uncharacterized protein LOC111010325 [Momordica charantia])

HSP 1 Score: 157 bits (398), Expect = 3.78e-44
Identity = 82/97 (84.54%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MGRKLDALLGRNFRASKFRPLLNL+LSRL++LT QR V  SQA SD LQLLQL HHHRAL
Sbjct: 1  MGRKLDALLGRNFRASKFRPLLNLALSRLAVLTNQRHVRRSQARSDALQLLQLGHHHRAL 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQR 97
          LRVE+VIK+QNALDAYVLIEGYLNLL+ERT LLEQ+R
Sbjct: 61 LRVEQVIKEQNALDAYVLIEGYLNLLIERTDLLEQER 97

[Close]

BLAST of Cucsat.G5932 vs. NCBI nr
Match: XP_022921602.1 (uncharacterized protein LOC111429814 [Cucurbita moschata] >KAG7032508.1 IST1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155 bits (391), Expect = 3.80e-43
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MGR LDALLGRNFRASKFRPLLNL+LSRL+ILT QRR+  SQA SDVLQLLQL H  RAL
Sbjct: 1  MGRTLDALLGRNFRASKFRPLLNLALSRLAILTNQRRLRRSQAQSDVLQLLQLHHQQRAL 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQR 97
          LRVE+VIKDQNALDAYVLIEGYLNLL+ERT+LLEQQR
Sbjct: 61 LRVEQVIKDQNALDAYVLIEGYLNLLIERTSLLEQQR 97

[Close]

BLAST of Cucsat.G5932 vs. ExPASy TrEMBL
Match: A0A0A0KAU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G032470 PE=3 SV=1)

HSP 1 Score: 182 bits (463), Expect = 1.71e-54
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL
Sbjct: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ 96
          LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ
Sbjct: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ 96

[Close]

BLAST of Cucsat.G5932 vs. ExPASy TrEMBL
Match: A0A1S3BD83 (uncharacterized protein LOC103488606 OS=Cucumis melo OX=3656 GN=LOC103488606 PE=3 SV=1)

HSP 1 Score: 177 bits (449), Expect = 1.14e-52
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MGRKLDALLGRNFRASKFRPLLNLSLSRLSILT+QRR+ CSQANSDVLQLLQLSHHHRAL
Sbjct: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTSQRRLRCSQANSDVLQLLQLSHHHRAL 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ 96
          LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ
Sbjct: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQ 96

[Close]

BLAST of Cucsat.G5932 vs. ExPASy TrEMBL
Match: A0A6J1CFG6 (uncharacterized protein LOC111010325 OS=Momordica charantia OX=3673 GN=LOC111010325 PE=3 SV=1)

HSP 1 Score: 157 bits (398), Expect = 1.83e-44
Identity = 82/97 (84.54%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MGRKLDALLGRNFRASKFRPLLNL+LSRL++LT QR V  SQA SD LQLLQL HHHRAL
Sbjct: 1  MGRKLDALLGRNFRASKFRPLLNLALSRLAVLTNQRHVRRSQARSDALQLLQLGHHHRAL 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQR 97
          LRVE+VIK+QNALDAYVLIEGYLNLL+ERT LLEQ+R
Sbjct: 61 LRVEQVIKEQNALDAYVLIEGYLNLLIERTDLLEQER 97

[Close]

BLAST of Cucsat.G5932 vs. ExPASy TrEMBL
Match: A0A6J1E0Z0 (uncharacterized protein LOC111429814 OS=Cucurbita moschata OX=3662 GN=LOC111429814 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.84e-43
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MGR LDALLGRNFRASKFRPLLNL+LSRL+ILT QRR+  SQA SDVLQLLQL H  RAL
Sbjct: 1  MGRTLDALLGRNFRASKFRPLLNLALSRLAILTNQRRLRRSQAQSDVLQLLQLHHQQRAL 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQR 97
          LRVE+VIKDQNALDAYVLIEGYLNLL+ERT+LLEQQR
Sbjct: 61 LRVEQVIKDQNALDAYVLIEGYLNLLIERTSLLEQQR 97

[Close]

BLAST of Cucsat.G5932 vs. ExPASy TrEMBL
Match: A0A6J1E4E5 (uncharacterized protein LOC111429823 OS=Cucurbita moschata OX=3662 GN=LOC111429823 PE=3 SV=1)

HSP 1 Score: 152 bits (383), Expect = 2.84e-42
Identity = 81/97 (83.51%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MGR LDALLGRNFRASKFRPLLNL+LSRL+ILT QRR+  SQA SDVLQLLQL H  RAL
Sbjct: 1  MGRTLDALLGRNFRASKFRPLLNLTLSRLAILTNQRRLRRSQAQSDVLQLLQLHHQQRAL 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQR 97
          LRVE+VIKDQNALDAYVLIEGYLNLL+ER +LLEQ+R
Sbjct: 61 LRVEQVIKDQNALDAYVLIEGYLNLLIERASLLEQER 97

[Close]

BLAST of Cucsat.G5932 vs. TAIR 10
Match: AT1G13340.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-21
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 1  MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRAL 60
          MG+KLDALLGR+F+ +KF+ L+ L+L+RLSIL  QR+   SQA SDV +LL+L  H  A 
Sbjct: 1  MGKKLDALLGRSFKTNKFKSLITLALTRLSILKNQRQARLSQAISDVTELLKLGQHEHAY 60

Query: 61 LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQR 98
           RV++V+KDQN LD    I GY  L L+R  L E  R
Sbjct: 61 HRVDQVVKDQNTLDVLFFIHGYFTLCLDRIHLFEHNR 97

[Close]

BLAST of Cucsat.G5932 vs. TAIR 10
Match: AT1G34220.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 25/93 (26.88%), Postives = 52/93 (55.91%), Query Frame = 0


Query: 5  LDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRALLRVE 64
          LD+   + F+A+K + LL L++ R+ ++  +R     Q   ++ +LL+      A +RVE
Sbjct: 4  LDSFFNKGFKAAKCKTLLKLTIPRIKLIRNRREAQIKQMRREIAKLLETGQEATARIRVE 63

Query: 65 KVIKDQNALDAYVLIEGYLNLLLERTTLLEQQR 98
           +I+++  + A  ++E +  L+  R  ++E QR
Sbjct: 64 HIIREEKMMAAQEILELFCELIAVRLPIIEAQR 96

[Close]

BLAST of Cucsat.G5932 vs. TAIR 10
Match: AT1G34220.2 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 25/93 (26.88%), Postives = 52/93 (55.91%), Query Frame = 0


Query: 5  LDALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRALLRVE 64
          LD+   + F+A+K + LL L++ R+ ++  +R     Q   ++ +LL+      A +RVE
Sbjct: 4  LDSFFNKGFKAAKCKTLLKLTIPRIKLIRNRREAQIKQMRREIAKLLETGQEATARIRVE 63

Query: 65 KVIKDQNALDAYVLIEGYLNLLLERTTLLEQQR 98
           +I+++  + A  ++E +  L+  R  ++E QR
Sbjct: 64 HIIREEKMMAAQEILELFCELIAVRLPIIEAQR 96

[Close]

BLAST of Cucsat.G5932 vs. TAIR 10
Match: AT2G19710.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 29/90 (32.22%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 8  LLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRALLRVEKVI 67
          +L R F+ +K +  L ++ SRL IL  ++ +   Q   ++ QLL+      A +RVE V+
Sbjct: 4  VLQRGFKPAKCKTALQMANSRLKILKNKKEIQIKQLRRELAQLLESGQTPTARIRVEHVV 63

Query: 68 KDQNALDAYVLIEGYLNLLLERTTLLEQQR 98
          +++  + AY LI  Y  LL+ R  ++E Q+
Sbjct: 64 REEKTVAAYELIGIYCELLVVRLGVIESQK 93

[Close]

BLAST of Cucsat.G5932 vs. TAIR 10
Match: AT4G35730.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 28/91 (30.77%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 7   ALLGRNFRASKFRPLLNLSLSRLSILTAQRRVGCSQANSDVLQLLQLSHHHRALLRVEKV 66
           +L  R F +SK +    ++++R+ ++  +R V   Q   D+  LLQ      A +RVE V
Sbjct: 20  SLFRRGFNSSKCKTAAKMAVARIKLIRNKRLVVVKQMRRDIAVLLQSGQDATARIRVEHV 79

Query: 67  IKDQNALDAYVLIEGYLNLLLERTTLLEQQR 98
           I++QN   A  +IE +  L++ R T++ +Q+
Sbjct: 80  IREQNIQAANEIIELFCELIVSRLTIITKQK 110

The following BLAST results are available for this feature:

BLAST of Cucsat.G5932 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P53990	1.3e-04	28.89	IST1 homolog OS=Homo sapiens OX=9606 GN=IST1 PE=1 SV=1	[more]
Q9CX00	1.3e-04	28.89	IST1 homolog OS=Mus musculus OX=10090 GN=Ist1 PE=1 SV=1	[more]
Q5R6G8	1.3e-04	28.89	IST1 homolog OS=Pongo abelii OX=9601 GN=IST1 PE=2 SV=1	[more]
Q568Z6	1.3e-04	28.89	IST1 homolog OS=Rattus norvegicus OX=10116 GN=Ist1 PE=2 SV=1	[more]
Q3ZBV1	6.2e-04	27.78	IST1 homolog OS=Bos taurus OX=9913 GN=IST1 PE=2 SV=1	[more]

BLAST of Cucsat.G5932 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656519.1	3.54e-54	100.00	uncharacterized protein LOC101211044 [Cucumis sativus] >KGN45949.1 hypothetical ...	[more]
XP_008445650.1	2.36e-52	96.88	PREDICTED: uncharacterized protein LOC103488606 [Cucumis melo]	[more]
XP_038884116.1	1.43e-50	95.83	uncharacterized protein LOC120075040 [Benincasa hispida]	[more]
XP_022139373.1	3.78e-44	84.54	uncharacterized protein LOC111010325 [Momordica charantia]	[more]
XP_022921602.1	3.80e-43	85.57	uncharacterized protein LOC111429814 [Cucurbita moschata] >KAG7032508.1 IST1-lik...	[more]

BLAST of Cucsat.G5932 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU0	1.71e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G032470 PE=3 SV=1	[more]
A0A1S3BD83	1.14e-52	96.88	uncharacterized protein LOC103488606 OS=Cucumis melo OX=3656 GN=LOC103488606 PE=...	[more]
A0A6J1CFG6	1.83e-44	84.54	uncharacterized protein LOC111010325 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1E0Z0	1.84e-43	85.57	uncharacterized protein LOC111429814 OS=Cucurbita moschata OX=3662 GN=LOC1114298...	[more]
A0A6J1E4E5	2.84e-42	83.51	uncharacterized protein LOC111429823 OS=Cucurbita moschata OX=3662 GN=LOC1114298...	[more]

BLAST of Cucsat.G5932 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13340.1	3.4e-21	53.61	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT1G34220.1	3.6e-07	26.88	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT1G34220.2	3.6e-07	26.88	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G19710.1	1.1e-06	32.22	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT4G35730.1	1.8e-06	30.77	Regulator of Vps4 activity in the MVB pathway protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 272..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 313..333
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..333
None	No IPR available	PANTHER	PTHR12161:SF16	REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN	coord: 8..351
IPR042277	Vacuolar protein sorting-associated protein IST1-like	GENE3D	1.20.1260.60		coord: 6..192 e-value: 1.6E-58 score: 199.3
IPR005061	Vacuolar protein sorting-associated protein Ist1	PFAM	PF03398	Ist1	coord: 21..182 e-value: 3.1E-47 score: 160.6
IPR005061	Vacuolar protein sorting-associated protein Ist1	PANTHER	PTHR12161	IST1 FAMILY MEMBER	coord: 8..351

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G5932.T4	Cucsat.G5932.T4	mRNA
Cucsat.G5932.T1	Cucsat.G5932.T1	mRNA
Cucsat.G5932.T2	Cucsat.G5932.T2	mRNA
Cucsat.G5932.T9	Cucsat.G5932.T9	mRNA
Cucsat.G5932.T6	Cucsat.G5932.T6	mRNA
Cucsat.G5932.T7	Cucsat.G5932.T7	mRNA
Cucsat.G5932.T5	Cucsat.G5932.T5	mRNA
Cucsat.G5932.T3	Cucsat.G5932.T3	mRNA
Cucsat.G5932.T8	Cucsat.G5932.T8	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport