Cucsat.G5828 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAAAATGAGATCCCAGAAAAGAGAAGAGGGAAAAATTGAATTTTCGTGAAAACTCTCCCACTCTTTCCCGCTCTACAACAATGGTTTCAATCAATTCCTTTTTCAAATATCTCTTATTTCCGCTCCAAAATTTCCCTCCAATTCTCTTCTCATAACACATTGCAAAACCCCATTTCCCAAATTCTTCATTCAATAACCTACAGAAAGCATAATCAATGGACAATGGTTGCGGTTTTGCCAAAACCATTTGCTCAATTTGCTACGAGGATCTAAAACCCATCATCGAGGATCTTCAATCCATCTCAATCTGTGGCCATGTCTTCCACGAGCTCTGGTAAGGAAACCATTTATTGATTTTCGCTCTGTATTGACTTTTTTTTTTCCTTGTTCGTTTGGAACATTGAGGAGTTGTAAATTTTGTAATTGGGGTTCTTTAGTTTACAGCAGTGGTTTGAGTATTGTTCGAATGGGAAGAAGAAATACAGTTGTCCTGTGTGTAAGCAGACCTGTGTGGGAAAAGATGTTGCGCGGTTGTATTTTCAATCTGTGGGGGATGCGAATGATTCAATGCTGGCTAAGAAACCGGCTGATTGGATTGAGAAAGATCCGGAGTTGTTGAGAAGTGAGGTCAAGAGGTTGGAGATGAGGGTATCGGTGCTTAATTCGACATTGGAAACTCAAGGGAAAGATATCAAAGAGCTTCATGAGGAGGTATTTCTGTTTGATTGTTGAGAAAACTAGAACGGTTAGATGTTTGATACTGAATGCTTGGATGTTTGATTTCTAATCTTTATAATGCTTACAACTTTAGAAATTAGCAGTCTTTGAAAAGGTTTAGTCTTCACTTTGTCTTCGGCGTTGATTCTTTTCACAGTGATAGAATTTGCACTAATTGTCATTTGGTTGTACTTGCTTAGTTTTAATGGTGCTTTCTTTAGGTCTTTTATAAGTGGTTGTTTTGGGAGGATATAGCTTCTATATCAAAATCAATTGAAAAGAAGGGAGGTAAATCCATCTTAGTAAATTTTTGCGGTTTCTCAATTTTTCCAATGTGATATCCTCAATATTTCCACTCAACAAGTGTCTCTTTGGGTTCGCCATTTTGAGATTGGTCTCAATTTTCATTTTTGGACTGCATGTCTATTTGGGCTTCATAAGCTATATTACCATATTAGTTAAAGTGGGATTCCAACCCAAAACTAATTGGCATGGAGAGAGTAACCCATGTATCTTTTAAACAATGTGAGGTTTCTTTTTTTAATTTTTTCAACGTGGGATCCTCGACCATCTGTGGTGTGGTGTGATGATTTTACTACTCTATGTTTGGAACATTTGATAGGAAAGTAATGCTGGGCCTTTGTAAGGTAGCTACAGAAAGTAGGTGTAGTTTCATATTTTTTTATTGGCCTCTACTGGAGCTTGGTTGATAGGAGTTTTCTGTTTGTAACTATTCCTCTTATATCATAAGATAGTAATTGAGGAATGTTTGGTATTTCTTTAGTTGCGTTGGGGCTTAGGTGATGTTTTATGGCGACGCCGCTTCTAGTTATAGCTTTGTACTTTTTATTTAATCTTTCTTATGAAAATTGAAAACGTACTTGGTTTCTCAAGGAATGATTTTTTAACTGGTTTTTATTCTACATTTTGGTTTATTATAATAATGCATATTTTGATTCTTTTGAGTAGTTAGCAAGGAGGCTTCTCTACATGGATCAGTATAATCTAACTTCAGAACTAATAGTTTCTTTGTTTACTTGTGTCCTAAACGACTCGACTTGAGACATTCAGCAATGATTTTCTTCTGAACATCAAAATTTGAATTCTTCAGCTCCTAGAGAAAGCTTTATCTGCTGTTATTGGCTCATGTTAACTATTGATGGGTTCATCATTCATGTATACACGTGGTACTTAATCACATTATCTTGTTTCAGCTTCAACTTTGCCAGGATGAACTGAAGAAAGAAGTAGGATTGAGGAATGATGCCATGAAACAAAAAACTTCAATGTCTCAACTGCTTCATCTCAAATCTGAGGTCAACAATCCCTTTTGTTAGAACTAGTGGGCTTGTTTGTTGTATGTTGAAAGTCCAAAGGTCTTTTTATGTTGTCCTAATATCTTTCATTATTTTACTTAGGCTTCTATTACCTACAAATTAATTCTCGCTTCGCTTGTATCATTAGTTTTATAAGAAAGTAGTAAGAAAGATTTGCACTGATTTTTCTCCTTGAACTAGGGTTTTCATGTAAAACTTGTGTTTGTTCTTCGTCTCTACTTCCAATACCTTTTAAGATTTTATGTTTTTTTCCCTTGCAATCTCTTCCTTTACGAACTGATTATGTTATACATTCATGGTGTTTGCCTGCTGATCTGGCAGGAGCTCGAAAACACAACTGTTGAGTGCAAAAGGTTGCACGAAAGAAGTATGGCTTTAGCTAAAGAACTTGCAGCTTTTAAGTTGTAAGTGCGAGTTTTGTTGCTAGAAAATAAAAAGAAAAGGTTTTTTTTTCCTCTTTTGTGTTTTTGCATACCAACAGTGTTATCATTTTTATTACAGAATATCTGAAGTGGATCTTGATGAAGAGGAGGTCCTAAAGCTTTCTTCATTGGGTAGTGGAGCAGACAATAAAGATACAATTGACATTCTAAGGAAATCCTTGGTCCTGCGTAATAGGTCAATATCTCACATCACCTAAGGAATCTGAAATAATGGAATTTAACTTTTCACAATTGTGTTATTTGGCCTTAAATCAAATCTTAGAGCAACTTTAATGAATCAAAAGCCATGTTGTTCAAGTATATAATAATGTTTCTTGAAGATCAGACCAATGATTGGAATATGTTTGTATTTTCTCTGGCTAGTTCTTCGTTTTCAATGTTCTTTGACAAAATCTTAATTTTTCCACAGGAGTTATAAAGAACTGATGGCTAAGTGCAATCTTCTTGGAAGGGGAGAGGCTCGCTCTTGTAAGAAACTTGAGAAGGCAAATGAGAAAATAAATAAGCTGAAGGTGAGCTCATAACAAAAATTTCCTCTTATTCTTTGGCTCCGATTTAATGTTGTATGATTATTATCAGGTAAGGGTCCAAGAACTAGAGAAAGCCATTGAAGAAAAAGATAATGAAGTTCTAAGAGGCTTGAAAGACGCAAAAAAAACTAGGAGTTCAGGGTAGTGTTTGTTGTAAATGTAACATGGTATCAGCAAAAAATAAGTCCGCTGCTGCAACAGATACTTTAGATTCAACTGCAAGCCAGATCAACGAACCGTTATCTTCTAGAAAAAAGAAAAATTTATGACTTTCCAAGCGATACTCGTACAAGCCATTTGACCACGGTAGATATAGCTGAGAACACATGCTCCTCAATGAATAAGAAAACTTCAGAATGTTCTCAAGTTGAGAATGCCAAAGATTCTACCATGGAAAGCCAAATAAGTGAGGAAGGAAACCGAGTGTCTTACCATCCGCAGTTGACCAGCTGCAATTTGGTCCGGAAAAAGGCATCAGAAAGAACAACCAATTCAGTAAATCCTATGCCTTCAACTACAGTCAGTAATATAGTCAGAACTGCTGTCCCGGGGGATGCATGCATGCCCTTGTTGGTTGAAGACTCTGCAGAACCTGAAGCTGTCCTTATTAACATTAGGCGAGAATCCTCTAGCCACATATCACTCAATAAGCTAGGTAATGGTACATTATTAAGCGTAGAGTTTGGTAACACATACTTGGTTTCTTCTTTTTCCTAAAAAAAGCAACTGATAAATACTGACATATTTGAGGTGGTGACATTACCATATCCAGGAGGTATGTCTTTTTCTGGTGGACTACTTGGCCCTAGTGGATCAAATATGTATTTGGGTAAATGGTGCAAACGTGGACAAACCAATGACTCAAGTGCAATGCAAGGTTCACGTTCAGGTGAACTGATTGCCGTTGGTGCTGACGGGAGAGGTGGACAAATAAAAGTCCTGAGATCTCAAAATGAATCCTCACTGGTAATTTTATGAAATTGTTTCTTCTTTTCTGTCATTCTCTGGAATATATCTAGTTTTCATGTTATTTTTCTTGGATAATGGATTATTTCACTTTTAGGGGTGTTTGTTTGGACAGTTGAGTTGAGCTTTAAAGTCTAGAGTTAATATGTTGAAGTCAGAAAATTTGTACTTTGAGTGCAAAGTTGTTTAGTTGAAGTTAGGAAGTTTGTTTGGGGAGCAGAGTTGGAGTTTCTCGAAAAATGAGCAAAAGAGAGTGAGGAAGATGGAGTTCATCAATAGGTGCACAGATAGTGAATGCTATTAAGATTGGTGGAGTTGAGTTATCTAATGCCAAACTGTTGAAGTCGATAGTCAACATCCCTTTAGAGTTTCTAGATGGACTAAAGTGAATAGAACATAAAATTTGAATTTAATGAGCAGCTTGCAACAAACCATATCTGACCATCTGTTGTCTGTGAATTGGTGCAGAGTGACGCCACATCAGCAGGAACAAAGAGGTTCAAGAATGGAGTAAAAAATGTTAATATGCGAATAGAGAACTTCTTTTCAAAGTGCTAGCTATTTGATAGCTTGTTTTGTGGGTGTAAATTTAGTCAGTTTTCATAAAAGATTGAAGAAGGTAGAGAAATGAATTAGGCAGGTGAAGAGAGGATTTTTGTTCTTACAAGTAGGGACGAGCATTAGTAAGTCGGAGTCGATTTTTGACTAAACTGTCACCAACCGACTATGATCGACTTAGTAAATGTTCAAACCAACTCCAACCACAAAAGAATACAATCCAGCCATTGGTTAGTCAATCAGTTCGTTTAGCCTTTAAATTTAATGTTAGTTTTGGACTTTTCTTCAACTGACACTGATTGAACCCCATTGCTATCTCCAACCAATTGCCTTTAATTTGGTTGGTCATCTTGGTTTTTTAGTTTATTTATACTCACCTCTGCTTACAAGTGCCAACTTCTCTAGTTTCATCCTGTAAATACGACCTTGAGTACTACCTCTCAAAGCCAACCTGGTTATGCTTTGATGACTAATGATATAACTTTGCCAATTGCTCATCCCATGTTTGATATTGTATTTCATTGCTGGTTTCTAATTTATAATTTTTAGTTTTTGTTAAGAAAAAGAAGTCTTTGGTCTTTGAGATTGGTCTTCGAGGTAGGAATTCGA ATGGACAATGGTTGCGGTTTTGCCAAAACCATTTGCTCAATTTGCTACGAGGATCTAAAACCCATCATCGAGGATCTTCAATCCATCTCAATCTGTGGCCATGTCTTCCACGAGCTCTGTTTACAGCAGTGGTTTGAGTATTGTTCGAATGGGAAGAAGAAATACAGTTGTCCTGTGTGTAAGCAGACCTGTGTGGGAAAAGATGTTGCGCGGTTGTATTTTCAATCTGTGGGGGATGCGAATGATTCAATGCTGGCTAAGAAACCGGCTGATTGGATTGAGAAAGATCCGGAGTTGTTGAGAAGTGAGGTCAAGAGGTTGGAGATGAGGGTATCGGTGCTTAATTCGACATTGGAAACTCAAGGGAAAGATATCAAAGAGCTTCATGAGGAGCTTCAACTTTGCCAGGATGAACTGAAGAAAGAAGTAGGATTGAGGAATGATGCCATGAAACAAAAAACTTCAATGTCTCAACTGCTTCATCTCAAATCTGAGGAGCTCGAAAACACAACTGTTGAGTGCAAAAGGTTGCACGAAAGAAGTATGGCTTTAGCTAAAGAACTTGCAGCTTTTAAGTTAATATCTGAAGTGGATCTTGATGAAGAGGAGGTCCTAAAGCTTTCTTCATTGGGTAGTGGAGCAGACAATAAAGATACAATTGACATTCTAAGGAAATCCTTGGTCCTGCGTAATAGGAGTTATAAAGAACTGATGGCTAAGTGCAATCTTCTTGGAAGGGGAGAGGCTCGCTCTTGTAAGAAACTTGAGAAGGCAAATGAGAAAATAAATAAGCTGAAGGTGAGCTCATAA MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVCKQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLETQGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSEELENTTVECKRLHERSMALAKELAAFKLISEVDLDEEEVLKLSSLGSGADNKDTIDILRKSLVLRNRSYKELMAKCNLLGRGEARSCKKLEKANEKINKLKVSS Homology
BLAST of Cucsat.G5828 vs. ExPASy Swiss-Prot
Match: Q09463 (E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04 Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 0
BLAST of Cucsat.G5828 vs. ExPASy Swiss-Prot
Match: Q8VIG6 (E3 ubiquitin-protein ligase TRAIP OS=Mus musculus OX=10090 GN=Traip PE=1 SV=2) HSP 1 Score: 45.1 bits (105), Expect = 9.5e-04 Identity = 33/150 (22.00%), Postives = 70/150 (46.67%), Query Frame = 0
BLAST of Cucsat.G5828 vs. NCBI nr
Match: XP_004138487.2 (E3 ubiquitin-protein ligase TRAIP isoform X1 [Cucumis sativus]) HSP 1 Score: 338 bits (867), Expect = 1.65e-111 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of Cucsat.G5828 vs. NCBI nr
Match: XP_038906710.1 (uncharacterized protein LOC120092637 [Benincasa hispida]) HSP 1 Score: 332 bits (852), Expect = 3.09e-109 Identity = 159/165 (96.36%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of Cucsat.G5828 vs. NCBI nr
Match: XP_008458166.1 (PREDICTED: E3 ubiquitin-protein ligase TRAIP-like [Cucumis melo]) HSP 1 Score: 328 bits (840), Expect = 1.77e-107 Identity = 159/165 (96.36%), Postives = 161/165 (97.58%), Query Frame = 0
BLAST of Cucsat.G5828 vs. NCBI nr
Match: XP_022958831.1 (uncharacterized protein LOC111459984 isoform X1 [Cucurbita moschata]) HSP 1 Score: 313 bits (802), Expect = 1.01e-101 Identity = 149/165 (90.30%), Postives = 160/165 (96.97%), Query Frame = 0
BLAST of Cucsat.G5828 vs. NCBI nr
Match: XP_023547669.1 (uncharacterized protein LOC111806541 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 312 bits (800), Expect = 2.02e-101 Identity = 148/165 (89.70%), Postives = 160/165 (96.97%), Query Frame = 0
BLAST of Cucsat.G5828 vs. ExPASy TrEMBL
Match: A0A1S3C7C7 (E3 ubiquitin-protein ligase TRAIP-like OS=Cucumis melo OX=3656 GN=LOC103497686 PE=4 SV=1) HSP 1 Score: 328 bits (840), Expect = 8.58e-108 Identity = 159/165 (96.36%), Postives = 161/165 (97.58%), Query Frame = 0
BLAST of Cucsat.G5828 vs. ExPASy TrEMBL
Match: A0A6J1H385 (uncharacterized protein LOC111459984 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459984 PE=4 SV=1) HSP 1 Score: 313 bits (802), Expect = 4.89e-102 Identity = 149/165 (90.30%), Postives = 160/165 (96.97%), Query Frame = 0
BLAST of Cucsat.G5828 vs. ExPASy TrEMBL
Match: A0A6J1L583 (uncharacterized protein LOC111499239 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499239 PE=4 SV=1) HSP 1 Score: 311 bits (798), Expect = 1.96e-101 Identity = 148/165 (89.70%), Postives = 160/165 (96.97%), Query Frame = 0
BLAST of Cucsat.G5828 vs. ExPASy TrEMBL
Match: A0A6J1D0D3 (uncharacterized protein LOC111016223 OS=Momordica charantia OX=3673 GN=LOC111016223 PE=4 SV=1) HSP 1 Score: 286 bits (732), Expect = 1.77e-91 Identity = 136/166 (81.93%), Postives = 152/166 (91.57%), Query Frame = 0
BLAST of Cucsat.G5828 vs. ExPASy TrEMBL
Match: A0A5D3CRM0 (E3 ubiquitin-protein ligase TRAIP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00290 PE=4 SV=1) HSP 1 Score: 270 bits (689), Expect = 1.13e-84 Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0
BLAST of Cucsat.G5828 vs. TAIR 10
Match: AT4G01270.1 (RING/U-box superfamily protein ) HSP 1 Score: 168.3 bits (425), Expect = 5.3e-42 Identity = 88/164 (53.66%), Postives = 116/164 (70.73%), Query Frame = 0
BLAST of Cucsat.G5828 vs. TAIR 10
Match: AT1G57730.1 (RING/U-box superfamily protein ) HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04 Identity = 18/57 (31.58%), Postives = 29/57 (50.88%), Query Frame = 0
BLAST of Cucsat.G5828 vs. TAIR 10
Match: AT5G05530.1 (RING/U-box superfamily protein ) HSP 1 Score: 42.4 bits (98), Expect = 4.4e-04 Identity = 20/50 (40.00%), Postives = 30/50 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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