Cucsat.G5828 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G5828
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	RING-type domain-containing protein
Location	ctg1402: 602304 .. 607417 (-)
RNA-Seq Expression	Cucsat.G5828
Synteny	Cucsat.G5828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATGAGATCCCAGAAAAGAGAAGAGGGAAAAATTGAATTTTCGTGAAAACTCTCCCACTCTTTCCCGCTCTACAACAATGGTTTCAATCAATTCCTTTTTCAAATATCTCTTATTTCCGCTCCAAAATTTCCCTCCAATTCTCTTCTCATAACACATTGCAAAACCCCATTTCCCAAATTCTTCATTCAATAACCTACAGAAAGCATAATCAATGGACAATGGTTGCGGTTTTGCCAAAACCATTTGCTCAATTTGCTACGAGGATCTAAAACCCATCATCGAGGATCTTCAATCCATCTCAATCTGTGGCCATGTCTTCCACGAGCTCTGGTAAGGAAACCATTTATTGATTTTCGCTCTGTATTGACTTTTTTTTTTCCTTGTTCGTTTGGAACATTGAGGAGTTGTAAATTTTGTAATTGGGGTTCTTTAGTTTACAGCAGTGGTTTGAGTATTGTTCGAATGGGAAGAAGAAATACAGTTGTCCTGTGTGTAAGCAGACCTGTGTGGGAAAAGATGTTGCGCGGTTGTATTTTCAATCTGTGGGGGATGCGAATGATTCAATGCTGGCTAAGAAACCGGCTGATTGGATTGAGAAAGATCCGGAGTTGTTGAGAAGTGAGGTCAAGAGGTTGGAGATGAGGGTATCGGTGCTTAATTCGACATTGGAAACTCAAGGGAAAGATATCAAAGAGCTTCATGAGGAGGTATTTCTGTTTGATTGTTGAGAAAACTAGAACGGTTAGATGTTTGATACTGAATGCTTGGATGTTTGATTTCTAATCTTTATAATGCTTACAACTTTAGAAATTAGCAGTCTTTGAAAAGGTTTAGTCTTCACTTTGTCTTCGGCGTTGATTCTTTTCACAGTGATAGAATTTGCACTAATTGTCATTTGGTTGTACTTGCTTAGTTTTAATGGTGCTTTCTTTAGGTCTTTTATAAGTGGTTGTTTTGGGAGGATATAGCTTCTATATCAAAATCAATTGAAAAGAAGGGAGGTAAATCCATCTTAGTAAATTTTTGCGGTTTCTCAATTTTTCCAATGTGATATCCTCAATATTTCCACTCAACAAGTGTCTCTTTGGGTTCGCCATTTTGAGATTGGTCTCAATTTTCATTTTTGGACTGCATGTCTATTTGGGCTTCATAAGCTATATTACCATATTAGTTAAAGTGGGATTCCAACCCAAAACTAATTGGCATGGAGAGAGTAACCCATGTATCTTTTAAACAATGTGAGGTTTCTTTTTTTAATTTTTTCAACGTGGGATCCTCGACCATCTGTGGTGTGGTGTGATGATTTTACTACTCTATGTTTGGAACATTTGATAGGAAAGTAATGCTGGGCCTTTGTAAGGTAGCTACAGAAAGTAGGTGTAGTTTCATATTTTTTTATTGGCCTCTACTGGAGCTTGGTTGATAGGAGTTTTCTGTTTGTAACTATTCCTCTTATATCATAAGATAGTAATTGAGGAATGTTTGGTATTTCTTTAGTTGCGTTGGGGCTTAGGTGATGTTTTATGGCGACGCCGCTTCTAGTTATAGCTTTGTACTTTTTATTTAATCTTTCTTATGAAAATTGAAAACGTACTTGGTTTCTCAAGGAATGATTTTTTAACTGGTTTTTATTCTACATTTTGGTTTATTATAATAATGCATATTTTGATTCTTTTGAGTAGTTAGCAAGGAGGCTTCTCTACATGGATCAGTATAATCTAACTTCAGAACTAATAGTTTCTTTGTTTACTTGTGTCCTAAACGACTCGACTTGAGACATTCAGCAATGATTTTCTTCTGAACATCAAAATTTGAATTCTTCAGCTCCTAGAGAAAGCTTTATCTGCTGTTATTGGCTCATGTTAACTATTGATGGGTTCATCATTCATGTATACACGTGGTACTTAATCACATTATCTTGTTTCAGCTTCAACTTTGCCAGGATGAACTGAAGAAAGAAGTAGGATTGAGGAATGATGCCATGAAACAAAAAACTTCAATGTCTCAACTGCTTCATCTCAAATCTGAGGTCAACAATCCCTTTTGTTAGAACTAGTGGGCTTGTTTGTTGTATGTTGAAAGTCCAAAGGTCTTTTTATGTTGTCCTAATATCTTTCATTATTTTACTTAGGCTTCTATTACCTACAAATTAATTCTCGCTTCGCTTGTATCATTAGTTTTATAAGAAAGTAGTAAGAAAGATTTGCACTGATTTTTCTCCTTGAACTAGGGTTTTCATGTAAAACTTGTGTTTGTTCTTCGTCTCTACTTCCAATACCTTTTAAGATTTTATGTTTTTTTCCCTTGCAATCTCTTCCTTTACGAACTGATTATGTTATACATTCATGGTGTTTGCCTGCTGATCTGGCAGGAGCTCGAAAACACAACTGTTGAGTGCAAAAGGTTGCACGAAAGAAGTATGGCTTTAGCTAAAGAACTTGCAGCTTTTAAGTTGTAAGTGCGAGTTTTGTTGCTAGAAAATAAAAAGAAAAGGTTTTTTTTTCCTCTTTTGTGTTTTTGCATACCAACAGTGTTATCATTTTTATTACAGAATATCTGAAGTGGATCTTGATGAAGAGGAGGTCCTAAAGCTTTCTTCATTGGGTAGTGGAGCAGACAATAAAGATACAATTGACATTCTAAGGAAATCCTTGGTCCTGCGTAATAGGTCAATATCTCACATCACCTAAGGAATCTGAAATAATGGAATTTAACTTTTCACAATTGTGTTATTTGGCCTTAAATCAAATCTTAGAGCAACTTTAATGAATCAAAAGCCATGTTGTTCAAGTATATAATAATGTTTCTTGAAGATCAGACCAATGATTGGAATATGTTTGTATTTTCTCTGGCTAGTTCTTCGTTTTCAATGTTCTTTGACAAAATCTTAATTTTTCCACAGGAGTTATAAAGAACTGATGGCTAAGTGCAATCTTCTTGGAAGGGGAGAGGCTCGCTCTTGTAAGAAACTTGAGAAGGCAAATGAGAAAATAAATAAGCTGAAGGTGAGCTCATAACAAAAATTTCCTCTTATTCTTTGGCTCCGATTTAATGTTGTATGATTATTATCAGGTAAGGGTCCAAGAACTAGAGAAAGCCATTGAAGAAAAAGATAATGAAGTTCTAAGAGGCTTGAAAGACGCAAAAAAAACTAGGAGTTCAGGGTAGTGTTTGTTGTAAATGTAACATGGTATCAGCAAAAAATAAGTCCGCTGCTGCAACAGATACTTTAGATTCAACTGCAAGCCAGATCAACGAACCGTTATCTTCTAGAAAAAAGAAAAATTTATGACTTTCCAAGCGATACTCGTACAAGCCATTTGACCACGGTAGATATAGCTGAGAACACATGCTCCTCAATGAATAAGAAAACTTCAGAATGTTCTCAAGTTGAGAATGCCAAAGATTCTACCATGGAAAGCCAAATAAGTGAGGAAGGAAACCGAGTGTCTTACCATCCGCAGTTGACCAGCTGCAATTTGGTCCGGAAAAAGGCATCAGAAAGAACAACCAATTCAGTAAATCCTATGCCTTCAACTACAGTCAGTAATATAGTCAGAACTGCTGTCCCGGGGGATGCATGCATGCCCTTGTTGGTTGAAGACTCTGCAGAACCTGAAGCTGTCCTTATTAACATTAGGCGAGAATCCTCTAGCCACATATCACTCAATAAGCTAGGTAATGGTACATTATTAAGCGTAGAGTTTGGTAACACATACTTGGTTTCTTCTTTTTCCTAAAAAAAGCAACTGATAAATACTGACATATTTGAGGTGGTGACATTACCATATCCAGGAGGTATGTCTTTTTCTGGTGGACTACTTGGCCCTAGTGGATCAAATATGTATTTGGGTAAATGGTGCAAACGTGGACAAACCAATGACTCAAGTGCAATGCAAGGTTCACGTTCAGGTGAACTGATTGCCGTTGGTGCTGACGGGAGAGGTGGACAAATAAAAGTCCTGAGATCTCAAAATGAATCCTCACTGGTAATTTTATGAAATTGTTTCTTCTTTTCTGTCATTCTCTGGAATATATCTAGTTTTCATGTTATTTTTCTTGGATAATGGATTATTTCACTTTTAGGGGTGTTTGTTTGGACAGTTGAGTTGAGCTTTAAAGTCTAGAGTTAATATGTTGAAGTCAGAAAATTTGTACTTTGAGTGCAAAGTTGTTTAGTTGAAGTTAGGAAGTTTGTTTGGGGAGCAGAGTTGGAGTTTCTCGAAAAATGAGCAAAAGAGAGTGAGGAAGATGGAGTTCATCAATAGGTGCACAGATAGTGAATGCTATTAAGATTGGTGGAGTTGAGTTATCTAATGCCAAACTGTTGAAGTCGATAGTCAACATCCCTTTAGAGTTTCTAGATGGACTAAAGTGAATAGAACATAAAATTTGAATTTAATGAGCAGCTTGCAACAAACCATATCTGACCATCTGTTGTCTGTGAATTGGTGCAGAGTGACGCCACATCAGCAGGAACAAAGAGGTTCAAGAATGGAGTAAAAAATGTTAATATGCGAATAGAGAACTTCTTTTCAAAGTGCTAGCTATTTGATAGCTTGTTTTGTGGGTGTAAATTTAGTCAGTTTTCATAAAAGATTGAAGAAGGTAGAGAAATGAATTAGGCAGGTGAAGAGAGGATTTTTGTTCTTACAAGTAGGGACGAGCATTAGTAAGTCGGAGTCGATTTTTGACTAAACTGTCACCAACCGACTATGATCGACTTAGTAAATGTTCAAACCAACTCCAACCACAAAAGAATACAATCCAGCCATTGGTTAGTCAATCAGTTCGTTTAGCCTTTAAATTTAATGTTAGTTTTGGACTTTTCTTCAACTGACACTGATTGAACCCCATTGCTATCTCCAACCAATTGCCTTTAATTTGGTTGGTCATCTTGGTTTTTTAGTTTATTTATACTCACCTCTGCTTACAAGTGCCAACTTCTCTAGTTTCATCCTGTAAATACGACCTTGAGTACTACCTCTCAAAGCCAACCTGGTTATGCTTTGATGACTAATGATATAACTTTGCCAATTGCTCATCCCATGTTTGATATTGTATTTCATTGCTGGTTTCTAATTTATAATTTTTAGTTTTTGTTAAGAAAAAGAAGTCTTTGGTCTTTGAGATTGGTCTTCGAGGTAGGAATTCGA

Coding sequence (CDS)

ATGGACAATGGTTGCGGTTTTGCCAAAACCATTTGCTCAATTTGCTACGAGGATCTAAAACCCATCATCGAGGATCTTCAATCCATCTCAATCTGTGGCCATGTCTTCCACGAGCTCTGTTTACAGCAGTGGTTTGAGTATTGTTCGAATGGGAAGAAGAAATACAGTTGTCCTGTGTGTAAGCAGACCTGTGTGGGAAAAGATGTTGCGCGGTTGTATTTTCAATCTGTGGGGGATGCGAATGATTCAATGCTGGCTAAGAAACCGGCTGATTGGATTGAGAAAGATCCGGAGTTGTTGAGAAGTGAGGTCAAGAGGTTGGAGATGAGGGTATCGGTGCTTAATTCGACATTGGAAACTCAAGGGAAAGATATCAAAGAGCTTCATGAGGAGCTTCAACTTTGCCAGGATGAACTGAAGAAAGAAGTAGGATTGAGGAATGATGCCATGAAACAAAAAACTTCAATGTCTCAACTGCTTCATCTCAAATCTGAGGAGCTCGAAAACACAACTGTTGAGTGCAAAAGGTTGCACGAAAGAAGTATGGCTTTAGCTAAAGAACTTGCAGCTTTTAAGTTAATATCTGAAGTGGATCTTGATGAAGAGGAGGTCCTAAAGCTTTCTTCATTGGGTAGTGGAGCAGACAATAAAGATACAATTGACATTCTAAGGAAATCCTTGGTCCTGCGTAATAGGAGTTATAAAGAACTGATGGCTAAGTGCAATCTTCTTGGAAGGGGAGAGGCTCGCTCTTGTAAGAAACTTGAGAAGGCAAATGAGAAAATAAATAAGCTGAAGGTGAGCTCATAA

Protein sequence

MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVCKQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLETQGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSEELENTTVECKRLHERSMALAKELAAFKLISEVDLDEEEVLKLSSLGSGADNKDTIDILRKSLVLRNRSYKELMAKCNLLGRGEARSCKKLEKANEKINKLKVSS

Homology

[Close]

BLAST of Cucsat.G5828 vs. ExPASy Swiss-Prot
Match: Q09463 (E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 8  AKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVCKQTCVGK 67
          A+  C+IC +  K  +     +S+CGH+F   CL QW +   N +    CPVCK    G 
Sbjct: 22 ARFECNICLDAAKDAV-----VSLCGHLFCWPCLSQWLDTRPNNQ---VCPVCKSAIDGN 81

Query: 68 DVARLYFQSVGDAND 83
           V  +Y +  GD++D
Sbjct: 82 KVVPIYGRG-GDSSD 87

[Close]

BLAST of Cucsat.G5828 vs. ExPASy Swiss-Prot
Match: Q8VIG6 (E3 ubiquitin-protein ligase TRAIP OS=Mus musculus OX=10090 GN=Traip PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 9.5e-04
Identity = 33/150 (22.00%), Postives = 70/150 (46.67%), Query Frame = 0


Query: 9   KTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVCKQTCVGKD 68
           + +C+IC  D      D+ +I  CGH FH  CL QWFE   +     +CP C+     K 
Sbjct: 4   RALCTIC-SDFFDHSRDVAAIH-CGHTFHLQCLIQWFETAPS----RTCPQCRIQVGKKT 63

Query: 69  VARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLETQGKDIKEL 128
           +    F  +    +++L    A++++ + + +++++ + +       + ++T    ++E 
Sbjct: 64  IINKLFFDLAQEEENVL---DAEFLKNELDSVKAQLSQKDREKRDSQAIIDTLRDTLEER 123

Query: 129 HEELQLCQDELKKEVGLRNDAMKQKTSMSQ 159
           +  ++  Q+ L K   L +   KQ   + Q
Sbjct: 124 NATVESLQNALNKAEMLCSTLKKQMKFLEQ 144

[Close]

BLAST of Cucsat.G5828 vs. NCBI nr
Match: XP_004138487.2 (E3 ubiquitin-protein ligase TRAIP isoform X1 [Cucumis sativus])

HSP 1 Score: 338 bits (867), Expect = 1.65e-111
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60
           MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC
Sbjct: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60

Query: 61  KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET 120
           KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET
Sbjct: 61  KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET 120

Query: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 165
           QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE
Sbjct: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 165

[Close]

BLAST of Cucsat.G5828 vs. NCBI nr
Match: XP_038906710.1 (uncharacterized protein LOC120092637 [Benincasa hispida])

HSP 1 Score: 332 bits (852), Expect = 3.09e-109
Identity = 159/165 (96.36%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60
           MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCP+C
Sbjct: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPMC 60

Query: 61  KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET 120
           KQTC+GKDVARLYFQSVGDANDSMLAKKPADW+EKDPELLRSEVKRLEM+VSVLNSTLET
Sbjct: 61  KQTCMGKDVARLYFQSVGDANDSMLAKKPADWVEKDPELLRSEVKRLEMKVSVLNSTLET 120

Query: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 165
           QGKD+KELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLK+E
Sbjct: 121 QGKDLKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKTE 165

[Close]

BLAST of Cucsat.G5828 vs. NCBI nr
Match: XP_008458166.1 (PREDICTED: E3 ubiquitin-protein ligase TRAIP-like [Cucumis melo])

HSP 1 Score: 328 bits (840), Expect = 1.77e-107
Identity = 159/165 (96.36%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60
           MDNGCG AKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCP+C
Sbjct: 1   MDNGCGIAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPMC 60

Query: 61  KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET 120
           KQTCVGKDVARLYFQSVGDAND MLAKKPADWIEKDPELLRSE+KRLEMRVSVLNSTLET
Sbjct: 61  KQTCVGKDVARLYFQSVGDANDPMLAKKPADWIEKDPELLRSEIKRLEMRVSVLNSTLET 120

Query: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 165
           QGKDIKELHEELQLCQDELKKEVGLRNDAMKQK  MSQLLHLKSE
Sbjct: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKILMSQLLHLKSE 165

[Close]

BLAST of Cucsat.G5828 vs. NCBI nr
Match: XP_022958831.1 (uncharacterized protein LOC111459984 isoform X1 [Cucurbita moschata])

HSP 1 Score: 313 bits (802), Expect = 1.01e-101
Identity = 149/165 (90.30%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60
           MDNGCG +KTICSICYEDLKPI+EDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCP+C
Sbjct: 1   MDNGCGISKTICSICYEDLKPIVEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPMC 60

Query: 61  KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET 120
           KQ CV KDVARLYFQSVGDANDSMLAKKPADW+EKDPELLRSEV+RLEM+V+VLNSTLET
Sbjct: 61  KQNCVAKDVARLYFQSVGDANDSMLAKKPADWVEKDPELLRSEVRRLEMKVTVLNSTLET 120

Query: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 165
           QGKD+KEL EELQ CQDE+KKEVGLRN+AMKQKTSMSQLL+LKSE
Sbjct: 121 QGKDLKELIEELQFCQDEVKKEVGLRNEAMKQKTSMSQLLNLKSE 165

[Close]

BLAST of Cucsat.G5828 vs. NCBI nr
Match: XP_023547669.1 (uncharacterized protein LOC111806541 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312 bits (800), Expect = 2.02e-101
Identity = 148/165 (89.70%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60
           MDNGCG +KTICSICYEDLKPI+EDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCP+C
Sbjct: 1   MDNGCGISKTICSICYEDLKPIVEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPMC 60

Query: 61  KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET 120
           KQ CV KDVARLYFQSVGDANDSMLAKKPADW+EKDPELLRSEV+RLEM+V+VLNST+ET
Sbjct: 61  KQNCVAKDVARLYFQSVGDANDSMLAKKPADWVEKDPELLRSEVRRLEMKVTVLNSTMET 120

Query: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 165
           QGKD+KEL EELQ CQDE+KKEVGLRN+AMKQKTSMSQLL+LKSE
Sbjct: 121 QGKDLKELIEELQFCQDEVKKEVGLRNEAMKQKTSMSQLLNLKSE 165

[Close]

BLAST of Cucsat.G5828 vs. ExPASy TrEMBL
Match: A0A1S3C7C7 (E3 ubiquitin-protein ligase TRAIP-like OS=Cucumis melo OX=3656 GN=LOC103497686 PE=4 SV=1)

HSP 1 Score: 328 bits (840), Expect = 8.58e-108
Identity = 159/165 (96.36%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60
           MDNGCG AKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCP+C
Sbjct: 1   MDNGCGIAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPMC 60

Query: 61  KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET 120
           KQTCVGKDVARLYFQSVGDAND MLAKKPADWIEKDPELLRSE+KRLEMRVSVLNSTLET
Sbjct: 61  KQTCVGKDVARLYFQSVGDANDPMLAKKPADWIEKDPELLRSEIKRLEMRVSVLNSTLET 120

Query: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 165
           QGKDIKELHEELQLCQDELKKEVGLRNDAMKQK  MSQLLHLKSE
Sbjct: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKILMSQLLHLKSE 165

[Close]

BLAST of Cucsat.G5828 vs. ExPASy TrEMBL
Match: A0A6J1H385 (uncharacterized protein LOC111459984 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459984 PE=4 SV=1)

HSP 1 Score: 313 bits (802), Expect = 4.89e-102
Identity = 149/165 (90.30%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60
           MDNGCG +KTICSICYEDLKPI+EDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCP+C
Sbjct: 1   MDNGCGISKTICSICYEDLKPIVEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPMC 60

Query: 61  KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET 120
           KQ CV KDVARLYFQSVGDANDSMLAKKPADW+EKDPELLRSEV+RLEM+V+VLNSTLET
Sbjct: 61  KQNCVAKDVARLYFQSVGDANDSMLAKKPADWVEKDPELLRSEVRRLEMKVTVLNSTLET 120

Query: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 165
           QGKD+KEL EELQ CQDE+KKEVGLRN+AMKQKTSMSQLL+LKSE
Sbjct: 121 QGKDLKELIEELQFCQDEVKKEVGLRNEAMKQKTSMSQLLNLKSE 165

[Close]

BLAST of Cucsat.G5828 vs. ExPASy TrEMBL
Match: A0A6J1L583 (uncharacterized protein LOC111499239 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499239 PE=4 SV=1)

HSP 1 Score: 311 bits (798), Expect = 1.96e-101
Identity = 148/165 (89.70%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60
           MDNGCG +KTICSICYEDLKPI+EDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCP+C
Sbjct: 1   MDNGCGISKTICSICYEDLKPIVEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPMC 60

Query: 61  KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET 120
           KQ CV KDVARLYFQSVGDANDSMLAKKPADW+EKDPELLRSEV+RLEM+V+VLNSTLE+
Sbjct: 61  KQNCVAKDVARLYFQSVGDANDSMLAKKPADWVEKDPELLRSEVRRLEMKVTVLNSTLES 120

Query: 121 QGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 165
           QGKD+KEL EELQ CQDE+KKEVGLRN+AMKQKTSMSQLL+LKSE
Sbjct: 121 QGKDLKELIEELQFCQDEVKKEVGLRNEAMKQKTSMSQLLNLKSE 165

[Close]

BLAST of Cucsat.G5828 vs. ExPASy TrEMBL
Match: A0A6J1D0D3 (uncharacterized protein LOC111016223 OS=Momordica charantia OX=3673 GN=LOC111016223 PE=4 SV=1)

HSP 1 Score: 286 bits (732), Expect = 1.77e-91
Identity = 136/166 (81.93%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60
           MDNGCG AKTICSICYEDLKPI+EDLQSI+ICGHVFHELCLQQWFEYCS+GKKKYSCP+C
Sbjct: 1   MDNGCGIAKTICSICYEDLKPIVEDLQSIAICGHVFHELCLQQWFEYCSSGKKKYSCPMC 60

Query: 61  KQTCVGKDVARLYFQSVGDA-NDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLE 120
           KQTC  KDVARLYFQSVGDA NDS+L +KP DW+E+DPE LR EVKRLEM+VSVLNS LE
Sbjct: 61  KQTCGAKDVARLYFQSVGDASNDSVLTQKPRDWVERDPEALRIEVKRLEMKVSVLNSALE 120

Query: 121 TQGKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 165
            QGKD+K+L EEL +CQDE+KKEVGLRN+A+KQK  MSQ+LHLKSE
Sbjct: 121 GQGKDLKQLSEELHICQDEVKKEVGLRNEAVKQKALMSQMLHLKSE 166

[Close]

BLAST of Cucsat.G5828 vs. ExPASy TrEMBL
Match: A0A5D3CRM0 (E3 ubiquitin-protein ligase TRAIP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00290 PE=4 SV=1)

HSP 1 Score: 270 bits (689), Expect = 1.13e-84
Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MDNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVC 60
           MDNGCG AKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCP+C
Sbjct: 1   MDNGCGIAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPMC 60

Query: 61  KQTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLET 120
           KQTCVGKDVARLYFQSVGDAND MLAKKPADWIEKDPELLRSE+KRLEMRVSVLNSTLET
Sbjct: 61  KQTCVGKDVARLYFQSVGDANDPMLAKKPADWIEKDPELLRSEIKRLEMRVSVLNSTLET 120

Query: 121 QGKDIKELHEE 131
           QGKDIKELHEE
Sbjct: 121 QGKDIKELHEE 131

[Close]

BLAST of Cucsat.G5828 vs. TAIR 10
Match: AT4G01270.1 (RING/U-box superfamily protein )

HSP 1 Score: 168.3 bits (425), Expect = 5.3e-42
Identity = 88/164 (53.66%), Postives = 116/164 (70.73%), Query Frame = 0


Query: 2   DNGCGFAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVCK 61
           +N  G A  ICSICYEDLKP++E+LQSIS CGHVFHELCLQQWFEYC +  K+ +CP+CK
Sbjct: 4   ENAAGNA--ICSICYEDLKPVVENLQSISACGHVFHELCLQQWFEYCPSTNKR-NCPICK 63

Query: 62  QTCVGKDVARLYFQSVGDANDSMLAKKPADWIEKDPELLRSEVKRLEMRVSVLNSTLETQ 121
           Q C  KD  RLYFQS G+  DS+ + K    IE+DP LLR EVKRLE +V  L S LE +
Sbjct: 64  QKCSLKDPCRLYFQSSGNQTDSIASDKVVG-IEEDPVLLRGEVKRLEGKVQNLTSALEAK 123

Query: 122 GKDIKELHEELQLCQDELKKEVGLRNDAMKQKTSMSQLLHLKSE 166
            K+  E+ ++L  C ++LK++   R +A+++ ++   LL LKSE
Sbjct: 124 KKENVEVSDKLHQCNEQLKEDKVKRWEALQEISTTQHLLKLKSE 163

[Close]

BLAST of Cucsat.G5828 vs. TAIR 10
Match: AT1G57730.1 (RING/U-box superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 18/57 (31.58%), Postives = 29/57 (50.88%), Query Frame = 0


Query: 12  CSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVCKQTCVGKD 69
           C+IC ED+   + D Q +  C HVFH  C+ +W  + +       CP+C+     +D
Sbjct: 116 CAICLEDMSQDVHDYQEMPNCPHVFHNDCIYKWLGHSN------LCPLCRTVLEDED 166

[Close]

BLAST of Cucsat.G5828 vs. TAIR 10
Match: AT5G05530.1 (RING/U-box superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 4.4e-04
Identity = 20/50 (40.00%), Postives = 30/50 (60.00%), Query Frame = 0


Query: 12  CSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCSNGKKKYSCPVCK 62
           C+IC E+L    E +++   C HVFH+LCL +W       + K SCP+C+
Sbjct: 148 CTICLEELCHDEESIETHDCC-HVFHKLCLWRWI------RTKSSCPLCR 190

The following BLAST results are available for this feature:

BLAST of Cucsat.G5828 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09463	1.5e-04	34.67	E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1	[more]
Q8VIG6	9.5e-04	22.00	E3 ubiquitin-protein ligase TRAIP OS=Mus musculus OX=10090 GN=Traip PE=1 SV=2	[more]

BLAST of Cucsat.G5828 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138487.2	1.65e-111	100.00	E3 ubiquitin-protein ligase TRAIP isoform X1 [Cucumis sativus]	[more]
XP_038906710.1	3.09e-109	96.36	uncharacterized protein LOC120092637 [Benincasa hispida]	[more]
XP_008458166.1	1.77e-107	96.36	PREDICTED: E3 ubiquitin-protein ligase TRAIP-like [Cucumis melo]	[more]
XP_022958831.1	1.01e-101	90.30	uncharacterized protein LOC111459984 isoform X1 [Cucurbita moschata]	[more]
XP_023547669.1	2.02e-101	89.70	uncharacterized protein LOC111806541 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cucsat.G5828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C7C7	8.58e-108	96.36	E3 ubiquitin-protein ligase TRAIP-like OS=Cucumis melo OX=3656 GN=LOC103497686 P...	[more]
A0A6J1H385	4.89e-102	90.30	uncharacterized protein LOC111459984 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1L583	1.96e-101	89.70	uncharacterized protein LOC111499239 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1D0D3	1.77e-91	81.93	uncharacterized protein LOC111016223 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A5D3CRM0	1.13e-84	96.95	E3 ubiquitin-protein ligase TRAIP-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Cucsat.G5828 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01270.1	5.3e-42	53.66	RING/U-box superfamily protein	[more]
AT1G57730.1	1.2e-04	31.58	RING/U-box superfamily protein	[more]
AT5G05530.1	4.4e-04	40.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 169..199
None	No IPR available	COILS	Coil	Coil	coord: 35..55
None	No IPR available	PANTHER	PTHR47344	RING ZINC FINGER PROTEIN-RELATED	coord: 4..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G5828.T5	Cucsat.G5828.T5	mRNA
Cucsat.G5828.T2	Cucsat.G5828.T2	mRNA
Cucsat.G5828.T1	Cucsat.G5828.T1	mRNA
Cucsat.G5828.T7	Cucsat.G5828.T7	mRNA
Cucsat.G5828.T4	Cucsat.G5828.T4	mRNA
Cucsat.G5828.T3	Cucsat.G5828.T3	mRNA
Cucsat.G5828.T6	Cucsat.G5828.T6	mRNA
Cucsat.G5828.T8	Cucsat.G5828.T8	mRNA
Cucsat.G5828.T9	Cucsat.G5828.T9	mRNA
Cucsat.G5828.T10	Cucsat.G5828.T10	mRNA
Cucsat.G5828.T11	Cucsat.G5828.T11	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding