Cucsat.G5815 (gene) Cucumber (B10) v3

Overview
NameCucsat.G5815
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionDiaminohydroxyphosphoribosylaminopyrimidine deaminase
Locationctg1402: 333409 .. 335730 (-)
RNA-Seq ExpressionCucsat.G5815
SyntenyCucsat.G5815
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTGAGAAATAAATTATTATTGTAAATACTAAAAGTGAAATTGGACTAAAATGGAATAATGTTTGAAATATAAGAACTTAATTAATTATAAGTTTTATGAAAGGGTAAGCTTAGCTTAAACAATTTCAAAGGTAATTTGGGGATTTCTACAATTTGTTGTCATCTCCTTCCTCAGGAAACCCTTATTCAGGATTCGAGAACCAGAATTTTTTTGAGGTTTCATTTTCCATGGAGGAAACCAAAGCAACCACAGCTCCATCTCAGACATTGCCTCCTCTTCCTCCCAAACTTAAGAAGCGCCCATTTGACAGAAATGCTTACATCCAATTTACAAAGATGCGCACCGTTATTAGAGATCTTCGACCTCATTTTCTCGAGGTTATAATCTCTGCTTGTTTTTAACGATTTTCTCTTTTTTTTTTTTATGGGTTTTCCTTGTATTTGGTCAAATTTTAAATTGTGATTTTGTAGCTCGGAATTGAGCGGGCTGTCTGTTTAGGGAAAGTTTGTTTGTTTTGCTAATTCAGTGTGTTTGAGATTATTTTCTCTCTCTTGAAGGTTATCAAGACCCCTGACTTTCGCAATTGCAAGGCAGCTACTGAAATTCGAGAGAGTAAGTGGTATTTTGATTCACCTTCCAACGCTCTGACTCGATGGAATATTTTTCAAATTTTCATACTGTTCGAGATGTATGTAGCTTGAGAAGCTAGTTTGAGACGATCTGACTGACCCGTTGGAACTATCTTCTTGTTTTCTGTTCCCATTTTGCTTTCTCATTGGTTATCTATTAATGTTTATGTATCATGGTTGCTTCTCTGAGATGTTTAGATTTTGCTCAAGTGATTACAAAAATTAGGATCCGAAAAGAAATAAAATCAAGTTAATCTTCTTTAAGACTTCTCTTGTTTCTTAGCAAAATGCATCACATATGAACATTGTTCATGAGGTTTCAAATTGAAAGCACCCTTTTTCCCCTTCTCTTTTTAATGAATGACTATCGAGGGAGGTGCCCAAAAAGCGGAAGTATGTTCCAAAGAGTCTAGAAACAATTTTGCAGCAATGTTTTTGTCCCCTTCATTATCTATGCACGCTACACACCAACTTGGATAGGGAGCAGCGTTAAGATTTCTTCTTCTTCCTTTTAACTTCTCATGCGGCACTAAGGTTCTATCTATCTTGGTAAGCCTTCCATTCTCAAACTTAATTTTCAGAGAACAATTGAATTTTAGTTGTGCATGAAACACATGGAGGCTTAGGAGAAAGACAACATGTGGGAGGATAATTTTGTGTCATTAAGAAATTGTCAAGTCATATCCAAATGGGAGTTCCTTCCCATAACCTATAAAAGAAAAATCTTGTGGAATGTACAACAGGTCCTTTGGTGTGTGTTAACCTTTGTATTCTTTTTCTTTAGTGCGAGGGTTTGCCACAATAATGTTCCAACTTCCAAGGGTCTTTGTTAAGGGTAATCTTACATACCATTTTCTCTTCCTATATAGCCTGTGGTTTGTAGGCTGACTAAGATAGAGTTTTAGCATTTGGTGAGATATACACGTTTGGTGGGATTATCAACCGCATGTTCTCCTCCGTCTTCCACATTGGTTGAAATTTTTGAAAGGTAAGGTACTCTCTCGTAACTCCTCCTTGAAGTACGTCTCCTCTCAAATGCCCCCAGCCTGCTCTATTTAAAACCACTTAACTATCGAATGCCTTATGCCCTTACGTAATGACTAATTTCTCTATATTCTAAAATTTGCCTATTGATAATGACAATTACTTTGATCCCAATCACTCTTTGTTCTCAGGGTTTTGTTTATCAACTAGTTCGACCAAATTTGTGGATTGAGCATCAACCATCATGGGTTGCTCTAGTGATAAACAAGGGAGCATGACCTTGATATTGAGCAAGAGGTCATGGGCTCAATCCATGATGGCTATTAACCACCTACCTAGGATTTACTATCATACGAGTTTCCTTGGTATCCAAATATTGTAGGGTCGGGTGAGTTGTCCCGTGAGATTAATCGAGGTGCAACATAAGTTGACCAAGGCACCTCTATGAAATAAAATCCCAAATTTTGGAAGAAATTTTGTCTCATGGGTTTAAAGATGAAGAAAATTATTTTTTAATTGAGTGTCAGACCCATTACTGTACACACATGCCTTCATGAATCGAACTATTATTTTTCTAGTTGAGCCTTGATATCACTCTAGACTCCAACTTCTCACGAGTAATGAAATCTGGAACTCTACTCCCTTGAGCAGTTATTCACACAAGCAATTAGATCCTTGAGGTGCATGCCCAACCGCCTAGGCTACTCCTTGGGATTCTTCTCAGCCATAATGTTCATAACACTGCAAGTCTGCAAGTACGTCATAGTTTTTTGTTCCTCCAAAACTTGGTTCTGAAATTTTCTTTTGTGGCTTTGTCATTCTCCCTGTTCTTCCAACCGTTTTGCATTTATTTTGCTTCTTGATGCCATCTGGGCACACCATCAATGACTTCAAGGTTCCAAGTCTGACCCAATGATCTTTTCTCCAAAACCTACCTCGTCTCAAGTCCCAACCCCCTACCTTCCCCTCCCCCCACTCTATTCTGCTTATAACCACTTCACCAACAAACTCCTTAGTCAACAACCAATATCCCTCAAATATCCTAAGATTGTTCCTAACTATTTCATATCCCATATGTGATGACTGTAGGGGAGCCTTGAAAGATATCTGTAGTGTGTAGGAAGATTTGGTAGAGAGTAGATCCGATTTTTTCTTGCTAATGGGTCCAGGGAGAGGTCATCGATACGATTTTTTCCTGAAAGAGAATTGAAAGAGAGAGCTACTTCACTTATATGAAGTTAATGAAATCTTTTGTTCCTGGCTAGGCTTGCTCATGGACTTGTCCATCCAGAAATTGTTCAAAAACATGGGATCATTCAAAATTCTTTATTTTAGTTTTTGTTTTGGGCGGGGTGGTATTGTTTCAACAAGTCCAATTATTGTGGAATGCACGATCTGAGTCTGAACAATGACCGTAATTTTAGTTTCACGGAAATGTATCTGATGCAGGAATAAAGGTTCTACAGGACGTGTATACAATGATGATGGCAGCAACTTCAGAAACTCTTTACATTGAGAAGACCAGTAGTAATGTGCTCGATGGTCTGGCTCGAGAACAACACCATGATGGTAATCTAGGGGACAAGTCATCTACAAAATCATATGAAAGTAATAACCCTTCAAGTAACGCCCCAGAAAAGCAGCGTGCGAATGATGGCCAGATATCTGGATCTTACGTTGTTGGTGGATCGGCATTTGGCTGGAATTTTATTGCCTTCACAGGTACCGAACCGGTATACTATGGAATTACGAAGGAAGTATTTCGAGAAAAGAATCCCATTGATTCATCTGAATCATGATTTTGAAATTAGTATGCTAGGGAAGTGTTCTATTTTATCAGGACTTGAGATGAACATTCAATAGATGCAATAGCTTTCTATTTAGAATGTGAAATTGTGAATCTATAGTGTAGAAGTTCAAGTAATGAAGATATTAACACTGATGTTCCTTTATCTAATGCCTTTGATGTTTAACATCTGGAAATGGTGTCTTTGTTGAACCAATTTCCAAGTTATGTAATTTTTCTTTCTGTACAAAATTGTTGCTGCTGAAACATAGTCATATTAATCTTCTGAAAGTCCTCTTTACTTTTCATCATAGTGAAACTTCTATTATTATTCTTTTAG

Coding sequence (CDS)

ATGGAGGAAACCAAAGCAACCACAGCTCCATCTCAGACATTGCCTCCTCTTCCTCCCAAACTTAAGAAGCGCCCATTTGACAGAAATGCTTACATCCAATTTACAAAGATGCGCACCGTTATTAGAGATCTTCGACCTCATTTTCTCGAGGTTATCAAGACCCCTGACTTTCGCAATTGCAAGGCAGCTACTGAAATTCGAGAGAGAATAAAGGTTCTACAGGACGTGTATACAATGATGATGGCAGCAACTTCAGAAACTCTTTACATTGAGAAGACCAGTAGTAATGTGCTCGATGGTCTGGCTCGAGAACAACACCATGATGGTAATCTAGGGGACAAGTCATCTACAAAATCATATGAAAGTAATAACCCTTCAAGTAACGCCCCAGAAAAGCAGCGTGCGAATGATGGCCAGATATCTGGATCTTACGTTGTTGGTGGATCGGCATTTGGCTGGAATTTTATTGCCTTCACAGGTACCGAACCGGTATACTATGGAATTACGAAGGAAGTATTTCGAGAAAAGAATCCCATTGATTCATCTGAATCATGA

Protein sequence

MEETKATTAPSQTLPPLPPKLKKRPFDRNAYIQFTKMRTVIRDLRPHFLEVIKTPDFRNCKAATEIRERIKVLQDVYTMMMAATSETLYIEKTSSNVLDGLAREQHHDGNLGDKSSTKSYESNNPSSNAPEKQRANDGQISGSYVVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIDSSES
Homology
The following BLAST results are available for this feature:
BLAST of Cucsat.G5815 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G5815 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G5815 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G5815 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002125Cytidine and deoxycytidylate deaminase domainPFAMPF00383dCMP_cyt_deam_1coord: 83..134
e-value: 2.8E-8
score: 33.5
IPR002125Cytidine and deoxycytidylate deaminase domainPROSITEPS51747CYT_DCMP_DEAMINASES_2coord: 81..135
score: 14.767637
NoneNo IPR availableGENE3D3.40.140.10Cytidine Deaminase, domain 2coord: 73..135
e-value: 9.6E-16
score: 59.6
NoneNo IPR availablePANTHERPTHR11079:SF162RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRD, CHLOROPLASTICcoord: 50..134
NoneNo IPR availablePANTHERPTHR11079CYTOSINE DEAMINASE FAMILY MEMBERcoord: 50..134
IPR016193Cytidine deaminase-likeSUPERFAMILY53927Cytidine deaminase-likecoord: 83..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G5815.T2Cucsat.G5815.T2mRNA
Cucsat.G5815.T8Cucsat.G5815.T8mRNA
Cucsat.G5815.T9Cucsat.G5815.T9mRNA
Cucsat.G5815.T6Cucsat.G5815.T6mRNA
Cucsat.G5815.T5Cucsat.G5815.T5mRNA
Cucsat.G5815.T11Cucsat.G5815.T11mRNA
Cucsat.G5815.T17Cucsat.G5815.T17mRNA
Cucsat.G5815.T1Cucsat.G5815.T1mRNA
Cucsat.G5815.T10Cucsat.G5815.T10mRNA
Cucsat.G5815.T19Cucsat.G5815.T19mRNA
Cucsat.G5815.T24Cucsat.G5815.T24mRNA
Cucsat.G5815.T23Cucsat.G5815.T23mRNA
Cucsat.G5815.T12Cucsat.G5815.T12mRNA
Cucsat.G5815.T21Cucsat.G5815.T21mRNA
Cucsat.G5815.T3Cucsat.G5815.T3mRNA
Cucsat.G5815.T4Cucsat.G5815.T4mRNA
Cucsat.G5815.T13Cucsat.G5815.T13mRNA
Cucsat.G5815.T15Cucsat.G5815.T15mRNA
Cucsat.G5815.T7Cucsat.G5815.T7mRNA
Cucsat.G5815.T14Cucsat.G5815.T14mRNA
Cucsat.G5815.T20Cucsat.G5815.T20mRNA
Cucsat.G5815.T16Cucsat.G5815.T16mRNA
Cucsat.G5815.T18Cucsat.G5815.T18mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009231 riboflavin biosynthetic process
molecular_function GO:0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016787 hydrolase activity