Cucsat.G15079 (gene) Cucumber (B10) v3

Overview
NameCucsat.G15079
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionexosome complex component RRP41 homolog
Locationctg197: 189535 .. 193009 (-)
RNA-Seq ExpressionCucsat.G15079
SyntenyCucsat.G15079
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCTCACAACTTTGAAACAAAAACAATCTAACGAAAATTGAAACTTCAAACCTCCTACGGATCCTTTTCTCCTAAACCCTATTTCACTACCTCCGAGACGCTGCACTTCACCTCCCCACTCCTCTGCCCGGGGGCGCCGCCGTACACTACACTCTCTGCTGCCACAGACCAGCCTTTCTACAAACTTTGCCGCTGCACCCTCCCTTTTGCACTCTCTCGTCTGTCTCTCCCAGTAATCAAAGTTACAACTTTCTTAGAAACACAGCGATTCAGCCCCACCTGTACCATTCTGTTCGCCAATGGAGTTCGTGACCCCCGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGGTACTTGTTTCATTTCTCATTCTCCTGCTTTATGCTTTTTCCCTCTTGTTTGAATTATTTGCTTCTATTCCGTTCCATTTTTACTCTGTTGTTTAATTTTAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTGGGTATCTACTCTCACTTTTCTTCCTCTTTTAGCTTTTGAGATATCTGTATCGAATACTAAGTTACTGAATATCCTATTCTGAATTAGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTATAACATCTCAGCTATTGTCGTATCTATCTCATTCAAAATGGCATGAATACAATTATACAAGAACTTGTTGACCGCTGTATTTCTTCTATTAAATCATCTGTGTGTTTATTGGAGAACTTCTGTATGGTTGGAATGAATTATTTTGTTGTATGTGTAGGTCCAGAATAAGAGTCAACAAATGAGCAACCAAGCACTGGTTATACTTTCTTCTGGATATTCAAAGTTTCAATTCTTTATGATCGTTGGTTATGCATTGTCTGAATCTCTGATCTCTTTCAGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGTTTTTTCAGTTTTTATGTGTCTCTGTTTGATACATTTGATGATTTGATGCCATGAATGAAAGTAGTTGATTCTTGGAATAGGATTATGGTGAACATTCATATCTTAAAACATAAGAAAATTGTACCCATGAAAGGTAGCATTTATATTATTCTCTTCAGAATATGGTCATGGTAAAACTAGTAGTGTAGTAGTTCCCAGTTCAATGACTTTGCTTAGGTCTCACCAAATGGAAGAGGTTAAAAACGGGTGGGAAAGAAATATGTTATTGATTCATTCATATCTATTTTGTTATCCGTTATATTAATTTATGGCATTTTTACATTCAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGGTCTCAGGTTTTCTACAATAATCCAAGAGCTGCTTCTCTATGATTTCAAACTTTTCCTTTCCTCATTCCTAGTTTTCGTGTGCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACGATTGGAGTTATTGATTAAGTTTATCAGATAAAGCTCTTCAAATTATTAGAATATTAATTCTAGTTCAGATATTTCAATTCCATAGTCGTCTCTTTTATTGCCATCTTTTTGTGTATTTGTCATTTTCTTCAAATATTCCTCTTATTTTTGTTCTCTTTCACAAAATAGAATATGAAAGGTTTTTCTCTATACTCCTTTACGCTAAGATGTTTGGAGCCTGCAACCATATTTTTGTTCACTACCCAATCACTCAATGATGGGCCTCACTTTTGTCACCTTCTCTCCATGGCTTGTTCTCTCCATGGCTTGTTCAATTGAACAGTCTTTTTAGCCCATGCCCCTAAAAAAACAAGGTCAATGCTCTATAGGAAACTTGGTTTGAAAGATTCAAGTAGAAACAAAAATGAAGTTTGAGATATGACCAATTTCAAGCCTCTCACTGTTTGACCTCCATTTTTTGTTGTAATTACAAATTTTTAAAGCCAACACGAGCACAATTCAACAAATGAGACATCATTTTCTTCTTTTGAGGTTGGAGATTCATACCTTCATTGACATATTTATTATATTGTTTTATTTTCCTTAAAAAAGTTTTAAGTCCAGCAGAGGCTTTTTATCATCAATCAATGATGCCTCATTTCTATCTCACGCTCATGTATTTTCTGTCATCAAAGAAAGTACCCATTACTTGTGTATTTGTTCAAAGACTACATTTTAACTTACCCACAAGCTGCAACTACTGTTTGTATGGCTTGCATAATGTTCTGTCTTCAGTGATAGTGATTTGAAACATAATTTTCGAAAGCCAAATTATTATCAAACGGGGCCTAAGCAGTATTTTAAAAAGCTCCTTCAGGCCTCATTTGCTTTATTTTCATGAAGAATTCTTTAGACATGCCCTGGAAATTTTCTTGTGTAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGGTAATTTAGAACTCCCCCCCTCAGTTAGATTTCGCTGTATTGGACGTGAAAAACTTTCTTATATTGCTTACAACAACTAATATGGATTGGCAATTATGATATGGACAGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGGTTCACTAACTTCTACCTTTTCCTATTCTTATCCACCTTGACCTGTTTTGTGATTTTGTAATGATAACATTTCACTCATGTTGACATGATCTTGGTGCAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAATGTAAGGACTTAAAACAATTACTTGACTTCTCGTTTGTTTGTCTATTCAGATTTACTAAAAGCCATTATTGTTGAGTCAATTTTCAATATAACAGTACGCTATTTTACATAGAAAGCGCATGGTTGGATTATTCAAATTTTGTGTTGTTTGTGTGGACAGGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGATGGATAGTCAAAGACTGTTTTGAGCATTCTTACCCAAAGGAAAGAGATTACAATTGTTTTAAGAGAATGAAGTTATTGATGCCTTTTTTTCCCATCTCTCAGTTGTGAATTAATACATGTCGCGGCCTAATTAATGTACAGAATGTGTTTTTCTATTTCCCTTACATTTCACCAATTTTTTCTCCTTTAATTATCATGATAGAAAGTTAAATTCATATTATCTCTAACTCATTTTGTTTTGTCTCATAAATTTCATATCAAACCCAAATTTGTATAAGAAGTGGCCTACCAAGCAATATTTAAAGTCAGTATTAACGTTGGCCTGATTAAACTTTGTATTC

Coding sequence (CDS)

ATGAAGAATTCTTTAGACATGCCCTGGAAATTTTCTTGTGTAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAATGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGATGGATAG

Protein sequence

MKNSLDMPWKFSCVGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
Homology
[Close]
BLAST of Cucsat.G15079 vs. ExPASy Swiss-Prot
Match: Q9SP08 (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.0e-48
Identity = 100/131 (76.34%), Postives = 113/131 (86.26%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V PEGLR DGRR  E+R++ AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QNKSQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGT 131
           F+QVLQADGGT
Sbjct: 121 FLQVLQADGGT 130

[Close]
BLAST of Cucsat.G15079 vs. ExPASy Swiss-Prot
Match: Q921I9 (Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3)

HSP 1 Score: 148.3 bits (373), Expect = 6.3e-35
Identity = 73/131 (55.73%), Postives = 100/131 (76.34%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKS 60
           +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ ++S
Sbjct: 4   LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGT 131
           +VQVLQADGGT
Sbjct: 124 YVQVLQADGGT 134

[Close]
BLAST of Cucsat.G15079 vs. ExPASy Swiss-Prot
Match: Q7YRA3 (Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-34
Identity = 72/131 (54.96%), Postives = 100/131 (76.34%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKS 60
           +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ +++
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGT 131
           +VQVLQADGGT
Sbjct: 124 YVQVLQADGGT 134

[Close]
BLAST of Cucsat.G15079 vs. ExPASy Swiss-Prot
Match: Q9NPD3 (Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-34
Identity = 72/131 (54.96%), Postives = 100/131 (76.34%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKS 60
           +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ +++
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGT 131
           +VQVLQADGGT
Sbjct: 124 YVQVLQADGGT 134

[Close]
BLAST of Cucsat.G15079 vs. ExPASy Swiss-Prot
Match: Q975G8 (Exosome complex component Rrp41 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=rrp41 PE=3 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-28
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 0 

Query: 4   VTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMS 63
           +   GLR DGR+P E+R ++ E+G +  A+GSA+FEMGNTKV+AAVYGP+E+  +   + 
Sbjct: 10  ILDNGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALP 69

Query: 64  NQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQV 123
           ++A++R  Y M  FST +R + P   RR  E+S VIR+ +E  IL  L PR+ ID+F++V
Sbjct: 70  DRAVLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEV 129

Query: 124 LQADGGT 131
           LQAD GT
Sbjct: 130 LQADAGT 135

[Close]
BLAST of Cucsat.G15079 vs. NCBI nr
Match: XP_004143616.1 (exosome complex component RRP41 homolog [Cucumis sativus] >KGN50449.1 hypothetical protein Csa_000356 [Cucumis sativus])

HSP 1 Score: 256 bits (653), Expect = 5.12e-84
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ
Sbjct: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGT 130
           VQVLQADGGT
Sbjct: 121 VQVLQADGGT 130

[Close]
BLAST of Cucsat.G15079 vs. NCBI nr
Match: XP_008445878.1 (PREDICTED: exosome complex component RRP41 homolog [Cucumis melo])

HSP 1 Score: 251 bits (640), Expect = 4.86e-82
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGT 130
           VQVLQADGGT
Sbjct: 121 VQVLQADGGT 130

[Close]
BLAST of Cucsat.G15079 vs. NCBI nr
Match: XP_038891797.1 (exosome complex component RRP41 homolog [Benincasa hispida])

HSP 1 Score: 244 bits (624), Expect = 1.32e-79
Identity = 123/130 (94.62%), Postives = 128/130 (98.46%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGT 130
           VQVLQADGGT
Sbjct: 121 VQVLQADGGT 130

[Close]
BLAST of Cucsat.G15079 vs. NCBI nr
Match: XP_022941604.1 (exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_022987997.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_023513826.1 exosome complex component RRP41 homolog [Cucurbita pepo subsp. pepo] >KAG6600116.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030788.1 Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241 bits (616), Expect = 2.17e-78
Identity = 121/130 (93.08%), Postives = 128/130 (98.46%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGT 130
           VQVLQADGGT
Sbjct: 121 VQVLQADGGT 130

[Close]
BLAST of Cucsat.G15079 vs. NCBI nr
Match: XP_022157614.1 (exosome complex component RRP41 homolog [Momordica charantia])

HSP 1 Score: 235 bits (600), Expect = 5.87e-76
Identity = 117/130 (90.00%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++R EIGAVSKA+GSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRFDGRRPMEMRQIRXEIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGT 130
           +QVLQADGGT
Sbjct: 121 LQVLQADGGT 130

[Close]
BLAST of Cucsat.G15079 vs. ExPASy TrEMBL
Match: A0A0A0KNI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175730 PE=4 SV=1)

HSP 1 Score: 256 bits (653), Expect = 2.48e-84
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ
Sbjct: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGT 130
           VQVLQADGGT
Sbjct: 121 VQVLQADGGT 130

[Close]
BLAST of Cucsat.G15079 vs. ExPASy TrEMBL
Match: A0A1S3BDQ6 (exosome complex component RRP41 homolog OS=Cucumis melo OX=3656 GN=LOC103488765 PE=4 SV=1)

HSP 1 Score: 251 bits (640), Expect = 2.35e-82
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGT 130
           VQVLQADGGT
Sbjct: 121 VQVLQADGGT 130

[Close]
BLAST of Cucsat.G15079 vs. ExPASy TrEMBL
Match: A0A6J1JKC7 (exosome complex component RRP41 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485363 PE=4 SV=1)

HSP 1 Score: 241 bits (616), Expect = 1.05e-78
Identity = 121/130 (93.08%), Postives = 128/130 (98.46%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGT 130
           VQVLQADGGT
Sbjct: 121 VQVLQADGGT 130

[Close]
BLAST of Cucsat.G15079 vs. ExPASy TrEMBL
Match: A0A6J1FNX1 (exosome complex component RRP41 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446911 PE=4 SV=1)

HSP 1 Score: 241 bits (616), Expect = 1.05e-78
Identity = 121/130 (93.08%), Postives = 128/130 (98.46%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGT 130
           VQVLQADGGT
Sbjct: 121 VQVLQADGGT 130

[Close]
BLAST of Cucsat.G15079 vs. ExPASy TrEMBL
Match: A0A6J1DWZ5 (exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111024273 PE=4 SV=1)

HSP 1 Score: 235 bits (600), Expect = 2.84e-76
Identity = 117/130 (90.00%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++R EIGAVSKA+GSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRFDGRRPMEMRQIRXEIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGT 130
           +QVLQADGGT
Sbjct: 121 LQVLQADGGT 130

The following BLAST results are available for this feature:
BLAST of Cucsat.G15079 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SP085.0e-4876.34Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41... [more]
Q921I96.3e-3555.73Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3[more]
Q7YRA31.1e-3454.96Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3[more]
Q9NPD31.1e-3454.96Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3[more]
Q975G82.0e-2848.82Exosome complex component Rrp41 OS=Sulfurisphaera tokodaii (strain DSM 16993 / J... [more]
BLAST of Cucsat.G15079 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143616.15.12e-84100.00exosome complex component RRP41 homolog [Cucumis sativus] >KGN50449.1 hypothetic... [more]
XP_008445878.14.86e-8297.69PREDICTED: exosome complex component RRP41 homolog [Cucumis melo][more]
XP_038891797.11.32e-7994.62exosome complex component RRP41 homolog [Benincasa hispida][more]
XP_022941604.12.17e-7893.08exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exo... [more]
XP_022157614.15.87e-7690.00exosome complex component RRP41 homolog [Momordica charantia][more]
BLAST of Cucsat.G15079 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNI92.48e-84100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175730 PE=4 SV=1[more]
A0A1S3BDQ62.35e-8297.69exosome complex component RRP41 homolog OS=Cucumis melo OX=3656 GN=LOC103488765 ... [more]
A0A6J1JKC71.05e-7893.08exosome complex component RRP41 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485... [more]
A0A6J1FNX11.05e-7893.08exosome complex component RRP41 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1DWZ52.84e-7690.00exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 6..124
e-value: 1.8E-33
score: 117.8
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 37..101
e-value: 1.2E-7
score: 31.7
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 15..123
NoneNo IPR availablePANTHERPTHR11953:SF0EXOSOME COMPLEX COMPONENT RRP41coord: 15..123
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 15..42
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 34..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G15079.T17Cucsat.G15079.T17mRNA
Cucsat.G15079.T5Cucsat.G15079.T5mRNA
Cucsat.G15079.T6Cucsat.G15079.T6mRNA
Cucsat.G15079.T4Cucsat.G15079.T4mRNA
Cucsat.G15079.T1Cucsat.G15079.T1mRNA
Cucsat.G15079.T16Cucsat.G15079.T16mRNA
Cucsat.G15079.T15Cucsat.G15079.T15mRNA
Cucsat.G15079.T19Cucsat.G15079.T19mRNA
Cucsat.G15079.T3Cucsat.G15079.T3mRNA
Cucsat.G15079.T8Cucsat.G15079.T8mRNA
Cucsat.G15079.T10Cucsat.G15079.T10mRNA
Cucsat.G15079.T7Cucsat.G15079.T7mRNA
Cucsat.G15079.T2Cucsat.G15079.T2mRNA
Cucsat.G15079.T18Cucsat.G15079.T18mRNA
Cucsat.G15079.T13Cucsat.G15079.T13mRNA
Cucsat.G15079.T12Cucsat.G15079.T12mRNA
Cucsat.G15079.T21Cucsat.G15079.T21mRNA
Cucsat.G15079.T9Cucsat.G15079.T9mRNA
Cucsat.G15079.T20Cucsat.G15079.T20mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071028 nuclear mRNA surveillance
biological_process GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0071051 polyadenylation-dependent snoRNA 3'-end processing
biological_process GO:0016075 rRNA catabolic process
biological_process GO:0034475 U4 snRNA 3'-end processing
cellular_component GO:0000177 cytoplasmic exosome (RNase complex)
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0005730 nucleolus
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0009022 tRNA nucleotidyltransferase activity