Cucsat.G15079.T6 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15079.T6
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionexosome complex component RRP41 homolog
Locationctg197: 189503 .. 192995 (-)
RNA-Seq ExpressionCucsat.G15079.T6
SyntenyCucsat.G15079.T6
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCTCACAACTTTGAAACAAAAACAATCTAACGAAAATTGAAACTTCAAACCTCCTACGGATCCTTTTCTCCTAAACCCTATTTCACTACCTCCGAGACGCTGCACTTCACCTCCCCACTCCTCTGCCCGGGGGCGCCGCCGTACACTACACTCTCTGCTGCCACAGACCAGCCTTTCTACAAACTTTGCCGCTGCACCCTCCCTTTTGCACTCTCTCGTCTGTCTCTCCCAGTAATCAAAGTTACAACTTTCTTAGAAACACAGCGATTCAGCCCCACCTGTACCATTCTGTTCGCCAATGGAGTTCGTGACCCCCGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGGTACTTGTTTCATTTCTCATTCTCCTGCTTTATGCTTTTTCCCTCTTGTTTGAATTATTTGCTTCTATTCCGTTCCATTTTTACTCTGTTGTTTAATTTTAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTGGGTATCTACTCTCACTTTTCTTCCTCTTTTAGCTTTTGAGATATCTGTATCGAATACTAAGTTACTGAATATCCTATTCTGAATTAGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTATAACATCTCAGCTATTGTCGTATCTATCTCATTCAAAATGGCATGAATACAATTATACAAGAACTTGTTGACCGCTGTATTTCTTCTATTAAATCATCTGTGTGTTTATTGGAGAACTTCTGTATGGTTGGAATGAATTATTTTGTTGTATGTGTAGGTCCAGAATAAGAGTCAACAAATGAGCAACCAAGCACTGGTTATACTTTCTTCTGGATATTCAAAGTTTCAATTCTTTATGATCGTTGGTTATGCATTGTCTGAATCTCTGATCTCTTTCAGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGTTTTTTCAGTTTTTATGTGTCTCTGTTTGATACATTTGATGATTTGATGCCATGAATGAAAGTAGTTGATTCTTGGAATAGGATTATGGTGAACATTCATATCTTAAAACATAAGAAAATTGTACCCATGAAAGGTAGCATTTATATTATTCTCTTCAGAATATGGTCATGGTAAAACTAGTAGTGTAGTAGTTCCCAGTTCAATGACTTTGCTTAGGTCTCACCAAATGGAAGAGGTTAAAAACGGGTGGGAAAGAAATATGTTATTGATTCATTCATATCTATTTTGTTATCCGTTATATTAATTTATGGCATTTTTACATTCAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGGTCTCAGGTTTTCTACAATAATCCAAGAGCTGCTTCTCTATGATTTCAAACTTTTCCTTTCCTCATTCCTAGTTTTCGTGTGCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACGATTGGAGTTATTGATTAAGTTTATCAGATAAAGCTCTTCAAATTATTAGAATATTAATTCTAGTTCAGATATTTCAATTCCATAGTCGTCTCTTTTATTGCCATCTTTTTGTGTATTTGTCATTTTCTTCAAATATTCCTCTTATTTTTGTTCTCTTTCACAAAATAGAATATGAAAGGTTTTTCTCTATACTCCTTTACGCTAAGATGTTTGGAGCCTGCAACCATATTTTTGTTCACTACCCAATCACTCAATGATGGGCCTCACTTTTGTCACCTTCTCTCCATGGCTTGTTCTCTCCATGGCTTGTTCAATTGAACAGTCTTTTTAGCCCATGCCCCTAAAAAAACAAGGTCAATGCTCTATAGGAAACTTGGTTTGAAAGATTCAAGTAGAAACAAAAATGAAGTTTGAGATATGACCAATTTCAAGCCTCTCACTGTTTGACCTCCATTTTTTGTTGTAATTACAAATTTTTAAAGCCAACACGAGCACAATTCAACAAATGAGACATCATTTTCTTCTTTTGAGGTTGGAGATTCATACCTTCATTGACATATTTATTATATTGTTTTATTTTCCTTAAAAAAGTTTTAAGTCCAGCAGAGGCTTTTTATCATCAATCAATGATGCCTCATTTCTATCTCACGCTCATGTATTTTCTGTCATCAAAGAAAGTACCCATTACTTGTGTATTTGTTCAAAGACTACATTTTAACTTACCCACAAGCTGCAACTACTGTTTGTATGGCTTGCATAATGTTCTGTCTTCAGTGATAGTGATTTGAAACATAATTTTCGAAAGCCAAATTATTATCAAACGGGGCCTAAGCAGTATTTTAAAAAGCTCCTTCAGGCCTCATTTGCTTTATTTTCATGAAGAATTCTTTAGACATGCCCTGGAAATTTTCTTGTGTAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGGTAATTTAGAACTCCCCCCCTCAGTTAGATTTCGCTGTATTGGACGTGAAAAACTTTCTTATATTGCTTACAACAACTAATATGGATTGGCAATTATGATATGGACAGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGGTTCACTAACTTCTACCTTTTCCTATTCTTATCCACCTTGACCTGTTTTGTGATTTTGTAATGATAACATTTCACTCATGTTGACATGATCTTGGTGCAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAATGTAAGGACTTAAAACAATTACTTGACTTCTCGTTTGTTTGTCTATTCAGATTTACTAAAAGCCATTATTGTTGAGTCAATTTTCAATATAACAGTACGCTATTTTACATAGAAAGCGCATGGTTGGATTATTCAAATTTTGTGTTGTTTGTGTGGACAGGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGATGGATAGTCAAAGACTGTTTTGAGCATTCTTACCCAAAGGAAAGAGATTACAATTGTTTTAAGAGAATGAAGTTATTGATGCCTTTTTTTCCCATCTCTCAGTTGTGAATTAATACATGTCGCGGCCTAATTAATGTACAGAATGTGTTTTTCTATTTCCCTTACATTTCACCAATTTTTTCTCCTTTAATTATCATGATAGAAAGTTAAATTCATATTATCTCTAACTCATTTTGTTTTGTCTCATAAATTTCATATCAAACCCAAATTTGTATAAGAAGTGGCCTACCAAGCAATATTTAAAGTCAGTATTAACGTTGGCCTGATTAAACTTTGTATTC

Coding sequence (CDS)

ATGAAGAATTCTTTAGACATGCCCTGGAAATTTTCTTGTGTAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAATGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGATGGATAG

Protein sequence

MKNSLDMPWKFSCVGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
Homology
[Close]
BLAST of Cucsat.G15079.T6 vs. ExPASy Swiss-Prot
Match: Q9SP08 (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.5e-43
Identity = 89/111 (80.18%), Postives = 95/111 (85.59%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG DVTVG LPK
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 126
           LDKV+LLQMDAKLP++ FE V  LA EGCKAIA  IR V+ E+TKQLEY R
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQENTKQLEYRR 239

[Close]
BLAST of Cucsat.G15079.T6 vs. ExPASy Swiss-Prot
Match: Q9NPD3 (Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-22
Identity = 49/106 (46.23%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP + +  LP 
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ 121
             ++ LL+MDA+L  D  E V+E A +  + + T +  V+ +H ++
Sbjct: 193 SGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 238

[Close]
BLAST of Cucsat.G15079.T6 vs. ExPASy Swiss-Prot
Match: Q7YRA3 (Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 105.5 bits (262), Expect = 4.4e-22
Identity = 49/106 (46.23%), Postives = 74/106 (69.81%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP + +  LP 
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ 121
             ++ LL+MDA+L  D  E V+E A    + + T +  V+ +H ++
Sbjct: 193 SGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQE 238

[Close]
BLAST of Cucsat.G15079.T6 vs. ExPASy Swiss-Prot
Match: Q921I9 (Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3)

HSP 1 Score: 105.1 bits (261), Expect = 5.8e-22
Identity = 48/106 (45.28%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP + +  LP 
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ 121
             ++ LL+MD++L  D  E V+E A +  + + T +  V+ +H ++
Sbjct: 193 SGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQE 238

[Close]
BLAST of Cucsat.G15079.T6 vs. ExPASy Swiss-Prot
Match: Q9V119 (Exosome complex component Rrp41 OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=rrp41 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.0e-19
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTR A I AA+LALADAGIPMRD+V +C+AG +    +LDLN  ED+ G  DV V  +P 
Sbjct: 135 GTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPL 194

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG 128
            + +TLLQMD  L  D F + ++LAI+G KA+    R  + E   ++    +G
Sbjct: 195 KNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVEG 247

[Close]
BLAST of Cucsat.G15079.T6 vs. NCBI nr
Match: XP_004143616.1 (exosome complex component RRP41 homolog [Cucumis sativus] >KGN50449.1 hypothetical protein Csa_000356 [Cucumis sativus])

HSP 1 Score: 223 bits (569), Expect = 2.18e-71
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK
Sbjct: 129 GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 188

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG 127
           LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
Sbjct: 189 LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG 241

[Close]
BLAST of Cucsat.G15079.T6 vs. NCBI nr
Match: KAA0034067.1 (exosome complex component RRP41-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (560), Expect = 2.59e-70
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK
Sbjct: 108 GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 167

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG 127
           LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIR VML+HTKQLEYHRDG
Sbjct: 168 LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG 220

[Close]
BLAST of Cucsat.G15079.T6 vs. NCBI nr
Match: XP_008445878.1 (PREDICTED: exosome complex component RRP41 homolog [Cucumis melo])

HSP 1 Score: 220 bits (560), Expect = 5.08e-70
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK
Sbjct: 129 GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 188

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG 127
           LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIR VML+HTKQLEYHRDG
Sbjct: 189 LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG 241

[Close]
BLAST of Cucsat.G15079.T6 vs. NCBI nr
Match: XP_038891797.1 (exosome complex component RRP41 homolog [Benincasa hispida])

HSP 1 Score: 208 bits (530), Expect = 1.83e-65
Identity = 105/113 (92.92%), Postives = 110/113 (97.35%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPK
Sbjct: 129 GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPK 188

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG 127
           LDKVTLLQMDAKLPIDVFE+VM+LAIEGCKAIA+YIR VML++TKQLEYHRDG
Sbjct: 189 LDKVTLLQMDAKLPIDVFENVMQLAIEGCKAIASYIREVMLDNTKQLEYHRDG 241

[Close]
BLAST of Cucsat.G15079.T6 vs. NCBI nr
Match: XP_022157614.1 (exosome complex component RRP41 homolog [Momordica charantia])

HSP 1 Score: 199 bits (506), Expect = 8.02e-62
Identity = 100/111 (90.09%), Postives = 107/111 (96.40%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPK
Sbjct: 129 GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPK 188

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 125
           LDKVTLLQMDAKLPID+FE+VM+LAIEGCKA+A+YIR VMLE+TK+LEY R
Sbjct: 189 LDKVTLLQMDAKLPIDIFENVMQLAIEGCKAVASYIREVMLENTKKLEYQR 239

[Close]
BLAST of Cucsat.G15079.T6 vs. ExPASy TrEMBL
Match: A0A0A0KNI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175730 PE=4 SV=1)

HSP 1 Score: 223 bits (569), Expect = 1.05e-71
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK
Sbjct: 129 GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 188

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG 127
           LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
Sbjct: 189 LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG 241

[Close]
BLAST of Cucsat.G15079.T6 vs. ExPASy TrEMBL
Match: A0A5A7SXS5 (Exosome complex component RRP41-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00550 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 1.26e-70
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK
Sbjct: 108 GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 167

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG 127
           LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIR VML+HTKQLEYHRDG
Sbjct: 168 LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG 220

[Close]
BLAST of Cucsat.G15079.T6 vs. ExPASy TrEMBL
Match: A0A1S3BDQ6 (exosome complex component RRP41 homolog OS=Cucumis melo OX=3656 GN=LOC103488765 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 2.46e-70
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK
Sbjct: 129 GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 188

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG 127
           LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIR VML+HTKQLEYHRDG
Sbjct: 189 LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG 241

[Close]
BLAST of Cucsat.G15079.T6 vs. ExPASy TrEMBL
Match: A0A6J1DWZ5 (exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111024273 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 3.88e-62
Identity = 100/111 (90.09%), Postives = 107/111 (96.40%), Query Frame = 0 

Query: 15  GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPK 74
           GTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPK
Sbjct: 129 GTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPK 188

Query: 75  LDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 125
           LDKVTLLQMDAKLPID+FE+VM+LAIEGCKA+A+YIR VMLE+TK+LEY R
Sbjct: 189 LDKVTLLQMDAKLPIDIFENVMQLAIEGCKAVASYIREVMLENTKKLEYQR 239

[Close]
BLAST of Cucsat.G15079.T6 vs. ExPASy TrEMBL
Match: A0A0L9ULU2 (RNase_PH_C domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g111600 PE=4 SV=1)

HSP 1 Score: 194 bits (492), Expect = 9.95e-62
Identity = 96/114 (84.21%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 12  SCVGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGF 71
           S +GTRSACINAATLALADAGIPMRD+VTSCSAGYLNS +LLDLNYVEDSAGGPDVT+G 
Sbjct: 2   SFIGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTSLLDLNYVEDSAGGPDVTLGI 61

Query: 72  LPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 125
           LPKLDKVTLLQMD+KLPID+ E+VM+LAIEGCKAIA YIR ++LE+TKQLEY R
Sbjct: 62  LPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREILLENTKQLEYRR 115

The following BLAST results are available for this feature:
BLAST of Cucsat.G15079.T6 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SP084.5e-4380.18Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41... [more]
Q9NPD32.6e-2246.23Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3[more]
Q7YRA34.4e-2246.23Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3[more]
Q921I95.8e-2245.28Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3[more]
Q9V1196.0e-1946.02Exosome complex component Rrp41 OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272... [more]
BLAST of Cucsat.G15079.T6 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143616.12.18e-71100.00exosome complex component RRP41 homolog [Cucumis sativus] >KGN50449.1 hypothetic... [more]
KAA0034067.12.59e-7098.23exosome complex component RRP41-like protein [Cucumis melo var. makuwa][more]
XP_008445878.15.08e-7098.23PREDICTED: exosome complex component RRP41 homolog [Cucumis melo][more]
XP_038891797.11.83e-6592.92exosome complex component RRP41 homolog [Benincasa hispida][more]
XP_022157614.18.02e-6290.09exosome complex component RRP41 homolog [Momordica charantia][more]
BLAST of Cucsat.G15079.T6 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNI91.05e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175730 PE=4 SV=1[more]
A0A5A7SXS51.26e-7098.23Exosome complex component RRP41-like protein OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3BDQ62.46e-7098.23exosome complex component RRP41 homolog OS=Cucumis melo OX=3656 GN=LOC103488765 ... [more]
A0A6J1DWZ53.88e-6290.09exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A0L9ULU29.95e-6284.21RNase_PH_C domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Viga... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 6..124
e-value: 1.8E-33
score: 117.8
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 37..101
e-value: 1.2E-7
score: 31.7
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 15..123
NoneNo IPR availablePANTHERPTHR11953:SF0EXOSOME COMPLEX COMPONENT RRP41coord: 15..123
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 15..42
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 34..120

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15079Cucsat.G15079gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15079.T6.E1Cucsat.G15079.T6.E1exon
Cucsat.G15079.T6.E2Cucsat.G15079.T6.E2exon
Cucsat.G15079.T6.E3Cucsat.G15079.T6.E3exon
Cucsat.G15079.T6.E4Cucsat.G15079.T6.E4exon
Cucsat.G15079.T6.E5Cucsat.G15079.T6.E5exon
Cucsat.G15079.T6.E6Cucsat.G15079.T6.E6exon
Cucsat.G15079.T6.E7Cucsat.G15079.T6.E7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15079.T6.C4Cucsat.G15079.T6.C4CDS
Cucsat.G15079.T6.C3Cucsat.G15079.T6.C3CDS
Cucsat.G15079.T6.C2Cucsat.G15079.T6.C2CDS
Cucsat.G15079.T6.C1Cucsat.G15079.T6.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15079.T6Cucsat.G15079.T6-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071028 nuclear mRNA surveillance
biological_process GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0071051 polyadenylation-dependent snoRNA 3'-end processing
biological_process GO:0016075 rRNA catabolic process
biological_process GO:0034475 U4 snRNA 3'-end processing
cellular_component GO:0000177 cytoplasmic exosome (RNase complex)
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0005730 nucleolus
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0009022 tRNA nucleotidyltransferase activity