Cucsat.G15079.T15 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15079.T15
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionexosome complex component RRP41 homolog
Locationctg197: 189535 .. 193009 (-)
RNA-Seq ExpressionCucsat.G15079.T15
SyntenyCucsat.G15079.T15
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATATATAACTATCCCTCCTCACAACTTTGAAACAAAAACAATCTAACGAAAATTGAAACTTCAAACCTCCTACGGATCCTTTTCTCCTAAACCCTATTTCACTACCTCCGAGACGCTGCACTTCACCTCCCCACTCCTCTGCCCGGGGGCGCCGCCGTACACTACACTCTCTGCTGCCACAGACCAGCCTTTCTACAAACTTTGCCGCTGCACCCTCCCTTTTGCACTCTCTCGTCTGTCTCTCCCAGTAATCAAAGTTACAACTTTCTTAGAAACACAGCGATTCAGCCCCACCTGTACCATTCTGTTCGCCAATGGAGTTCGTGACCCCCGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGGTACTTGTTTCATTTCTCATTCTCCTGCTTTATGCTTTTTCCCTCTTGTTTGAATTATTTGCTTCTATTCCGTTCCATTTTTACTCTGTTGTTTAATTTTAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTGGGTATCTACTCTCACTTTTCTTCCTCTTTTAGCTTTTGAGATATCTGTATCGAATACTAAGTTACTGAATATCCTATTCTGAATTAGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTATAACATCTCAGCTATTGTCGTATCTATCTCATTCAAAATGGCATGAATACAATTATACAAGAACTTGTTGACCGCTGTATTTCTTCTATTAAATCATCTGTGTGTTTATTGGAGAACTTCTGTATGGTTGGAATGAATTATTTTGTTGTATGTGTAGGTCCAGAATAAGAGTCAACAAATGAGCAACCAAGCACTGGTTATACTTTCTTCTGGATATTCAAAGTTTCAATTCTTTATGATCGTTGGTTATGCATTGTCTGAATCTCTGATCTCTTTCAGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGTTTTTTCAGTTTTTATGTGTCTCTGTTTGATACATTTGATGATTTGATGCCATGAATGAAAGTAGTTGATTCTTGGAATAGGATTATGGTGAACATTCATATCTTAAAACATAAGAAAATTGTACCCATGAAAGGTAGCATTTATATTATTCTCTTCAGAATATGGTCATGGTAAAACTAGTAGTGTAGTAGTTCCCAGTTCAATGACTTTGCTTAGGTCTCACCAAATGGAAGAGGTTAAAAACGGGTGGGAAAGAAATATGTTATTGATTCATTCATATCTATTTTGTTATCCGTTATATTAATTTATGGCATTTTTACATTCAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGGTCTCAGGTTTTCTACAATAATCCAAGAGCTGCTTCTCTATGATTTCAAACTTTTCCTTTCCTCATTCCTAGTTTTCGTGTGCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACGATTGGAGTTATTGATTAAGTTTATCAGATAAAGCTCTTCAAATTATTAGAATATTAATTCTAGTTCAGATATTTCAATTCCATAGTCGTCTCTTTTATTGCCATCTTTTTGTGTATTTGTCATTTTCTTCAAATATTCCTCTTATTTTTGTTCTCTTTCACAAAATAGAATATGAAAGGTTTTTCTCTATACTCCTTTACGCTAAGATGTTTGGAGCCTGCAACCATATTTTTGTTCACTACCCAATCACTCAATGATGGGCCTCACTTTTGTCACCTTCTCTCCATGGCTTGTTCTCTCCATGGCTTGTTCAATTGAACAGTCTTTTTAGCCCATGCCCCTAAAAAAACAAGGTCAATGCTCTATAGGAAACTTGGTTTGAAAGATTCAAGTAGAAACAAAAATGAAGTTTGAGATATGACCAATTTCAAGCCTCTCACTGTTTGACCTCCATTTTTTGTTGTAATTACAAATTTTTAAAGCCAACACGAGCACAATTCAACAAATGAGACATCATTTTCTTCTTTTGAGGTTGGAGATTCATACCTTCATTGACATATTTATTATATTGTTTTATTTTCCTTAAAAAAGTTTTAAGTCCAGCAGAGGCTTTTTATCATCAATCAATGATGCCTCATTTCTATCTCACGCTCATGTATTTTCTGTCATCAAAGAAAGTACCCATTACTTGTGTATTTGTTCAAAGACTACATTTTAACTTACCCACAAGCTGCAACTACTGTTTGTATGGCTTGCATAATGTTCTGTCTTCAGTGATAGTGATTTGAAACATAATTTTCGAAAGCCAAATTATTATCAAACGGGGCCTAAGCAGTATTTTAAAAAGCTCCTTCAGGCCTCATTTGCTTTATTTTCATGAAGAATTCTTTAGACATGCCCTGGAAATTTTCTTGTGTAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGGTAATTTAGAACTCCCCCCCTCAGTTAGATTTCGCTGTATTGGACGTGAAAAACTTTCTTATATTGCTTACAACAACTAATATGGATTGGCAATTATGATATGGACAGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGGTTCACTAACTTCTACCTTTTCCTATTCTTATCCACCTTGACCTGTTTTGTGATTTTGTAATGATAACATTTCACTCATGTTGACATGATCTTGGTGCAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAATGTAAGGACTTAAAACAATTACTTGACTTCTCGTTTGTTTGTCTATTCAGATTTACTAAAAGCCATTATTGTTGAGTCAATTTTCAATATAACAGTACGCTATTTTACATAGAAAGCGCATGGTTGGATTATTCAAATTTTGTGTTGTTTGTGTGGACAGGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGATGGATAGTCAAAGACTGTTTTGAGCATTCTTACCCAAAGGAAAGAGATTACAATTGTTTTAAGAGAATGAAGTTATTGATGCCTTTTTTTCCCATCTCTCAGTTGTGAATTAATACATGTCGCGGCCTAATTAATGTACAGAATGTGTTTTTCTATTTCCCTTACATTTCACCAATTTTTTCTCCTTTAATTATCATGATAGAAAGTTAAATTCATATTATCTCTAACTCATTTTGTTTTGTCTCATAAATTTCATATCAAACCCAAATTTGTATAAGAAGTGGCCTACCAAGCAATATTTAAAGTCAG

Coding sequence (CDS)

ATGGAGTTCGTGACCCCCGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTCCAGAATAAGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGGTCTCAGGTTTTCTACAATAATCCAAGAGCTGCTTCTCTATGA

Protein sequence

MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQVFYNNPRAASL
Homology
[Close]
BLAST of Cucsat.G15079.T15 vs. ExPASy Swiss-Prot
Match: Q9SP08 (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-40
Identity = 87/118 (73.73%), Postives = 100/118 (84.75%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V PEGLR DGRR  E+R++ AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QNKSQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 118
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQ+
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQI 117

[Close]
BLAST of Cucsat.G15079.T15 vs. ExPASy Swiss-Prot
Match: Q921I9 (Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-27
Identity = 60/118 (50.85%), Postives = 87/118 (73.73%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKS 60
           +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ ++S
Sbjct: 4   LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 118
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQ+
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121

[Close]
BLAST of Cucsat.G15079.T15 vs. ExPASy Swiss-Prot
Match: Q7YRA3 (Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-27
Identity = 59/118 (50.00%), Postives = 87/118 (73.73%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKS 60
           +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ +++
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 118
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQ+
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121

[Close]
BLAST of Cucsat.G15079.T15 vs. ExPASy Swiss-Prot
Match: Q9NPD3 (Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-27
Identity = 59/118 (50.00%), Postives = 87/118 (73.73%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKS 60
           +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ +++
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 118
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQ+
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121

[Close]
BLAST of Cucsat.G15079.T15 vs. ExPASy Swiss-Prot
Match: Q975G8 (Exosome complex component Rrp41 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=rrp41 PE=3 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 3.4e-22
Identity = 52/114 (45.61%), Postives = 77/114 (67.54%), Query Frame = 0 

Query: 4   VTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMS 63
           +   GLR DGR+P E+R ++ E+G +  A+GSA+FEMGNTKV+AAVYGP+E+  +   + 
Sbjct: 10  ILDNGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALP 69

Query: 64  NQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 118
           ++A++R  Y M  FST +R + P   RR  E+S VIR+ +E  IL  L PR+ +
Sbjct: 70  DRAVLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILVELFPRTVI 122

[Close]
BLAST of Cucsat.G15079.T15 vs. NCBI nr
Match: XP_004143616.1 (exosome complex component RRP41 homolog [Cucumis sativus] >KGN50449.1 hypothetical protein Csa_000356 [Cucumis sativus])

HSP 1 Score: 231 bits (589), Expect = 1.99e-74
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ
Sbjct: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 117
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ+
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQI 117

[Close]
BLAST of Cucsat.G15079.T15 vs. NCBI nr
Match: XP_008445878.1 (PREDICTED: exosome complex component RRP41 homolog [Cucumis melo])

HSP 1 Score: 226 bits (576), Expect = 1.88e-72
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 117
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ+
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQI 117

[Close]
BLAST of Cucsat.G15079.T15 vs. NCBI nr
Match: XP_038891797.1 (exosome complex component RRP41 homolog [Benincasa hispida])

HSP 1 Score: 220 bits (560), Expect = 5.08e-70
Identity = 109/117 (93.16%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 117
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ+
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQI 117

[Close]
BLAST of Cucsat.G15079.T15 vs. NCBI nr
Match: XP_022941604.1 (exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_022987997.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_023513826.1 exosome complex component RRP41 homolog [Cucurbita pepo subsp. pepo] >KAG6600116.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030788.1 Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217 bits (552), Expect = 8.33e-69
Identity = 107/117 (91.45%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 117
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ+
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQI 117

[Close]
BLAST of Cucsat.G15079.T15 vs. NCBI nr
Match: XP_022157614.1 (exosome complex component RRP41 homolog [Momordica charantia])

HSP 1 Score: 212 bits (539), Expect = 7.86e-67
Identity = 104/117 (88.89%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++R EIGAVSKA+GSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRFDGRRPMEMRQIRXEIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 117
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ+
Sbjct: 61  QLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQI 117

[Close]
BLAST of Cucsat.G15079.T15 vs. ExPASy TrEMBL
Match: A0A0A0KNI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175730 PE=4 SV=1)

HSP 1 Score: 231 bits (589), Expect = 9.63e-75
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ
Sbjct: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 117
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ+
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQI 117

[Close]
BLAST of Cucsat.G15079.T15 vs. ExPASy TrEMBL
Match: A0A1S3BDQ6 (exosome complex component RRP41 homolog OS=Cucumis melo OX=3656 GN=LOC103488765 PE=4 SV=1)

HSP 1 Score: 226 bits (576), Expect = 9.11e-73
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 117
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ+
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQI 117

[Close]
BLAST of Cucsat.G15079.T15 vs. ExPASy TrEMBL
Match: A0A6J1JKC7 (exosome complex component RRP41 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485363 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 4.03e-69
Identity = 107/117 (91.45%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 117
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ+
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQI 117

[Close]
BLAST of Cucsat.G15079.T15 vs. ExPASy TrEMBL
Match: A0A6J1FNX1 (exosome complex component RRP41 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446911 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 4.03e-69
Identity = 107/117 (91.45%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 117
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ+
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQI 117

[Close]
BLAST of Cucsat.G15079.T15 vs. ExPASy TrEMBL
Match: A0A6J1DWZ5 (exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111024273 PE=4 SV=1)

HSP 1 Score: 212 bits (539), Expect = 3.80e-67
Identity = 104/117 (88.89%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++R EIGAVSKA+GSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRFDGRRPMEMRQIRXEIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQV 117
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ+
Sbjct: 61  QLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQI 117

The following BLAST results are available for this feature:
BLAST of Cucsat.G15079.T15 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SP081.2e-4073.73Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41... [more]
Q921I92.0e-2750.85Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3[more]
Q7YRA33.5e-2750.00Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3[more]
Q9NPD33.5e-2750.00Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3[more]
Q975G83.4e-2245.61Exosome complex component Rrp41 OS=Sulfurisphaera tokodaii (strain DSM 16993 / J... [more]
BLAST of Cucsat.G15079.T15 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143616.11.99e-7499.15exosome complex component RRP41 homolog [Cucumis sativus] >KGN50449.1 hypothetic... [more]
XP_008445878.11.88e-7296.58PREDICTED: exosome complex component RRP41 homolog [Cucumis melo][more]
XP_038891797.15.08e-7093.16exosome complex component RRP41 homolog [Benincasa hispida][more]
XP_022941604.18.33e-6991.45exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exo... [more]
XP_022157614.17.86e-6788.89exosome complex component RRP41 homolog [Momordica charantia][more]
BLAST of Cucsat.G15079.T15 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNI99.63e-7599.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175730 PE=4 SV=1[more]
A0A1S3BDQ69.11e-7396.58exosome complex component RRP41 homolog OS=Cucumis melo OX=3656 GN=LOC103488765 ... [more]
A0A6J1JKC74.03e-6991.45exosome complex component RRP41 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485... [more]
A0A6J1FNX14.03e-6991.45exosome complex component RRP41 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1DWZ53.80e-6788.89exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 18..117
e-value: 9.1E-23
score: 81.2
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..120
e-value: 4.3E-36
score: 126.5
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 1..117
NoneNo IPR availablePANTHERPTHR11953:SF0EXOSOME COMPLEX COMPONENT RRP41coord: 1..117
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 3..118

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15079Cucsat.G15079gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15079.T15.E1Cucsat.G15079.T15.E1exon
Cucsat.G15079.T15.E2Cucsat.G15079.T15.E2exon
Cucsat.G15079.T15.E3Cucsat.G15079.T15.E3exon
Cucsat.G15079.T15.E4Cucsat.G15079.T15.E4exon
Cucsat.G15079.T15.E5Cucsat.G15079.T15.E5exon
Cucsat.G15079.T15.E6Cucsat.G15079.T15.E6exon
Cucsat.G15079.T15.E7Cucsat.G15079.T15.E7exon
Cucsat.G15079.T15.E8Cucsat.G15079.T15.E8exon
Cucsat.G15079.T15.E9Cucsat.G15079.T15.E9exon
Cucsat.G15079.T15.E10Cucsat.G15079.T15.E10exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15079.T15.C6Cucsat.G15079.T15.C6CDS
Cucsat.G15079.T15.C5Cucsat.G15079.T15.C5CDS
Cucsat.G15079.T15.C4Cucsat.G15079.T15.C4CDS
Cucsat.G15079.T15.C3Cucsat.G15079.T15.C3CDS
Cucsat.G15079.T15.C2Cucsat.G15079.T15.C2CDS
Cucsat.G15079.T15.C1Cucsat.G15079.T15.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15079.T15Cucsat.G15079.T15-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071028 nuclear mRNA surveillance
biological_process GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0071051 polyadenylation-dependent snoRNA 3'-end processing
biological_process GO:0016075 rRNA catabolic process
biological_process GO:0034475 U4 snRNA 3'-end processing
cellular_component GO:0000177 cytoplasmic exosome (RNase complex)
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0005730 nucleolus
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0009022 tRNA nucleotidyltransferase activity