Cucsat.G12370 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12370
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg1837: 1323373 .. 1324860 (+)
RNA-Seq Expression	Cucsat.G12370
Synteny	Cucsat.G12370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCTAGCTTTAGCTCCCTCTATAACAAGGTATAGTTTATATATATATATATGTGTGTGTGTATATATATAATATGAGAGCTATGGCTATGGCTATGGCTATTCCCTAGTGAAGAAAAAGGGTTGGTGAATTAGGGGTTTGGTTTGATATTAGGGTTGTGCCTAAGCTGAGATCATATCATATCATAAAAATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTTCAAACCCATCATCTTCATCAACAACTACGCTTGGGTGAGATTATATTTATTCAAAACCTCTTTATCTTTTGTTTTTGTTTATTGATTTTTAAATTGTGTTTACGAGTACCTTCAAATTATTTAAATTAATCTTAGAAACGTGTTGTGTTTGTTTTGAAATATATAGACAGAGTACTCCTCTCTATTTTTATCTTGACGAAAGATTCATATTTTGTTTTGGTTAAAATATCATTTTAATTATGTATAATATTGGTTCATAACTTTTAACATTAATCTCTATCATGAGTTAAAAAAAATGATGTTTATTAATATTTTATTTATAAATCAATCAAATATATGTGCATAATGTGTCTTTTCCATTACAGTTATTATTGAACTAATTTTGATAAGATTTCTAGAAAATAAAATGATCAAAAATCGATAATTAAAAAATACACAAGGTCATGTACCTATACAAAATAACATATATATGGAATTTGATATTATTCTTTATTTCACCATATACTTCTTTGACTTTGAGCCTAACTTTATCATAATTTTCTTTTCCATTGTTGAGTGAAAAACAATTTTTTATAGAGGTTTGAAATTAAGGTTTTCATTCAATAACTTTTTTTTAGAAAGTTGTGAAAATTAAAGGAAAATTATGTCAAACATTTACTTTTGGTTTTTAAGATATGGAATTGATAAATGATGAGGAATCGTTAATTATTTATTGTCTTTTGGTTTGGAGTGAAAGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTCCTCCTCTCTTCCTTTTTATACTTGTTTTAAATCTTCTTTTTTTCATTCATTGAAATATGGAATAAGATCAAAACCCTATTTATATATACACACATACATCTTTTTGTTTGAATAAATTTTTGTTATCGACTACCTCCATTTATGCATGTACACATACACACATATAGATCTTGTTCTAGTACAATAGTTGGAGTAACGAGATTTGAGAACAAATTTCATGTTATCAATATACTCGAATCTTAGCTAAACGTAG

Coding sequence (CDS)

ATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTTCAAACCCATCATCTTCATCAACAACTACGCTTGGTGAAAGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAA

Protein sequence

MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQLRLVKGGGGKEENNKTAAESWTVSKAKGGRKVRRRRGRSQQPPAGKGEERSFHFDELK

Homology

[Close]

BLAST of Cucsat.G12370 vs. NCBI nr
Match: KGN58897.2 (hypothetical protein Csa_001334 [Cucumis sativus])

HSP 1 Score: 143 bits (360), Expect = 1.44e-41
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQLRLVKGGGGKE 60
          MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQ RL  GGGGKE
Sbjct: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRL--GGGGKE 60

Query: 61 ENNKTAAESWTVSKAKGG 78
          ENNKTAAESWTVSKAKGG
Sbjct: 61 ENNKTAAESWTVSKAKGG 76

[Close]

BLAST of Cucsat.G12370 vs. NCBI nr
Match: KAG6581619.1 (hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 5.73e-07
Identity = 47/83 (56.63%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 1  MGVYACLLISLLLILQTVWISSLSNAS----NNSFPYESLSNPPLQTHHLHQQLRLVKGG 60
          MGVYACLLISLLLI QT  ISSLSN S    N+SF     ++ PLQ HH   QL LV G 
Sbjct: 1  MGVYACLLISLLLIFQTHSISSLSNGSLPISNHSF-----NSQPLQHHH---QL-LVSGR 60

Query: 61 GGKEENNKTAAESWTVSKAKGGR 79
             EEN  T      V KAKGGR
Sbjct: 61 DDGEENTTTV--KLVVLKAKGGR 72

[Close]

BLAST of Cucsat.G12370 vs. ExPASy TrEMBL
Match: A0A0A0LCI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 2.33e-45
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQLRLVKGGGGKE 60
          MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQ RLVKGGGGKE
Sbjct: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE 60

Query: 61 ENNKTAAESWTVSKAKGG 78
          ENNKTAAESWTVSKAKGG
Sbjct: 61 ENNKTAAESWTVSKAKGG 78

The following BLAST results are available for this feature:

BLAST of Cucsat.G12370 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G12370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58897.2	1.44e-41	96.15	hypothetical protein Csa_001334 [Cucumis sativus]	[more]
KAG6581619.1	5.73e-07	56.63	hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cucsat.G12370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI5	2.33e-45	98.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12370.T1	Cucsat.G12370.T1	mRNA
Cucsat.G12370.T2	Cucsat.G12370.T2	mRNA
Cucsat.G12370.T3	Cucsat.G12370.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity