Cucsat.G12370.T3 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G12370.T3
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg1837: 1323464 .. 1324751 (+)
RNA-Seq ExpressionCucsat.G12370.T3
SyntenyCucsat.G12370.T3
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTATGGCTATTCCCTAGTGAAGAAAAAGGGTTGGTGAATTAGGGGTTTGGTTTGATATTAGGGTTGTGCCTAAGCTGAGATCATATCATATCATAAAAATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTTCAAACCCATCATCTTCATCAACAACTACGCTTGGGTGAGATTATATTTATTCAAAACCTCTTTATCTTTTGTTTTTGTTTATTGATTTTTAAATTGTGTTTACGAGTACCTTCAAATTATTTAAATTAATCTTAGAAACGTGTTGTGTTTGTTTTGAAATATATAGACAGAGTACTCCTCTCTATTTTTATCTTGACGAAAGATTCATATTTTGTTTTGGTTAAAATATCATTTTAATTATGTATAATATTGGTTCATAACTTTTAACATTAATCTCTATCATGAGTTAAAAAAAATGATGTTTATTAATATTTTATTTATAAATCAATCAAATATATGTGCATAATGTGTCTTTTCCATTACAGTTATTATTGAACTAATTTTGATAAGATTTCTAGAAAATAAAATGATCAAAAATCGATAATTAAAAAATACACAAGGTCATGTACCTATACAAAATAACATATATATGGAATTTGATATTATTCTTTATTTCACCATATACTTCTTTGACTTTGAGCCTAACTTTATCATAATTTTCTTTTCCATTGTTGAGTGAAAAACAATTTTTTATAGAGGTTTGAAATTAAGGTTTTCATTCAATAACTTTTTTTTAGAAAGTTGTGAAAATTAAAGGAAAATTATGTCAAACATTTACTTTTGGTTTTTAAGATATGGAATTGATAAATGATGAGGAATCGTTAATTATTTATTGTCTTTTGGTTTGGAGTGAAAGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTCCTCCTCTCTTCCTTTTTATACTTGTTTTAAATCTTCTTTTTTTCATTCATTGAAATATGGAATAAGATCAAAACCCTATTTATATATACACACATACATCTTTTTGTTTGAATAAATTTTTGTTATCGACTACCTCCATTTATG

Coding sequence (CDS)

ATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTTCAAACCCATCATCTTCATCAACAACTACGCTTGGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAA

Protein sequence

MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQLRLGGGKEENNKTAAESWTVSKAKGGRKVRRRRGRSQQPPAGKGEERSFHFDELK
Homology
[Close]
BLAST of Cucsat.G12370.T3 vs. NCBI nr
Match: KGN58897.2 (hypothetical protein Csa_001334 [Cucumis sativus])

HSP 1 Score: 142 bits (357), Expect = 3.65e-41
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0 

Query: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQLRLGGG-KEEN 60
          MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQ RLGGG KEEN
Sbjct: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLGGGGKEEN 60

Query: 61 NKTAAESWTVSKAKGG 75
          NKTAAESWTVSKAKGG
Sbjct: 61 NKTAAESWTVSKAKGG 76

[Close]
BLAST of Cucsat.G12370.T3 vs. NCBI nr
Match: KAG6581619.1 (hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 1.86e-07
Identity = 42/80 (52.50%), Postives = 47/80 (58.75%), Query Frame = 0 

Query: 1  MGVYACLLISLLLILQTVWISSLSNAS----NNSFPYESLSNPPLQTHHLHQQLRLGGGK 60
          MGVYACLLISLLLI QT  ISSLSN S    N+SF     ++ PLQ HH   QL + G  
Sbjct: 1  MGVYACLLISLLLIFQTHSISSLSNGSLPISNHSF-----NSQPLQHHH---QLLVSGRD 60

Query: 61 EENNKTAAESWTVSKAKGGR 76
          +    T      V KAKGGR
Sbjct: 61 DGEENTTTVKLVVLKAKGGR 72

[Close]
BLAST of Cucsat.G12370.T3 vs. ExPASy TrEMBL
Match: A0A0A0LCI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 3.79e-41
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQLRL---GGGKE 60
          MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQ RL   GGGKE
Sbjct: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE 60

Query: 61 ENNKTAAESWTVSKAKGG 75
          ENNKTAAESWTVSKAKGG
Sbjct: 61 ENNKTAAESWTVSKAKGG 78

The following BLAST results are available for this feature:
BLAST of Cucsat.G12370.T3 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G12370.T3 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58897.23.65e-4197.37hypothetical protein Csa_001334 [Cucumis sativus][more]
KAG6581619.11.86e-0752.50hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cucsat.G12370.T3 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCI53.79e-4194.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..104

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G12370Cucsat.G12370gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12370.T3.E1Cucsat.G12370.T3.E1exon
Cucsat.G12370.T3.E2Cucsat.G12370.T3.E2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12370.T3.C1Cucsat.G12370.T3.C1CDS
Cucsat.G12370.T3.C2Cucsat.G12370.T3.C2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G12370.T3Cucsat.G12370.T3-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity