Cucsat.G10417 (gene) Cucumber (B10) v3

Overview
NameCucsat.G10417
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionReplication protein A 14 kDa subunit B-like
Locationctg1676: 38997 .. 41390 (+)
RNA-Seq ExpressionCucsat.G10417
SyntenyCucsat.G10417
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCAACAAAAATGGAATAAATAACAAAATTTTGGCATAAATTCCCGCCAGAAATTCCCGCCTCTTCGCAGTTAGTCACTTAAAATTCTCAATCTCTCTCTCTCTCTGAATCGTGCAAGGAAGACTCGTCGTCTCACAGGTACGCATTAGAAATGGTTCTGAGCCACCAGATTTAGGGTTTGAGACTCTCTCCTACTTAGATCGTTCAGTTATGTAACAACTTGAACTTCTTCTATATTGTACGTAAGGTAGTTGCTGTGATAATCTGTTCGAAATGTTTCATTTGATCGATTGTAATCTTCTTCGCACAAAACAGTGTAATTGATTGCTCTTTCCGTGTTTGTTTCTTTTAAAGTTGGATTCTGTTTCTGCATCAATTTTGTTATACGCAACGCCATGAGTTGAGCAGAGTTACTACAGGTCATGATATTAATTGTCTGTTGTGCTAAATGTTATAGTTGCATTAAGTTGTTTGTTCCTGATGTTTTACCGTTGAGACTAAAGGATGATGTTTATTTATTTGGTGAAAGACATTTTACTTCTGTGGAATAGAGTTCTTAATTTGCTTTCCAACGCTTTTGCTTTATCCCTTGAATGTAGAAGGAGTGCTATCATATTAGATTTATAAGGGGGAAATCCCTTTATAATTATAATCTAAACATTGAACTTGTTGATCCAAGCCTTTAACTTTGAACATTGAATCAATTTAGACCTTTCCGATTAGAATTAGTTTTAATACTGTTAATGCAACCTAGCTACTTTGGTAATTTGTTGAATGCCATTATTTATAGATGATTTCGAACTTTTTAAATGGATGTAAAAATAGCTATTGATTACTAGTAATTGATTTGAATTGATTCATTGTTTATATTTTAAATTGATACAAATATAGTTTGACGTTTAGTGATACAATCTCCAAAGTTCAAGGGTAAAACTATAAACTGATTTTTGCCTTGATTTATTCAATTTGTAAGTGTAGACTACACATGTTTCCAGTTAATTTAGTCTGGATTGAACATTATACTGTCGTGATGTTATCACACTAACTGTACTATCCCAAGCATCATGCCATTCGTCATTGTTGATTTTTCAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATTGTTACGGGAAAGTCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACGGTCCCTCACATGAACTTCGTAGAGGTAGTTGGTATTGCTGAAAGCAACAAGACCATCAAGGTTGAAGATTGGACAGACTTTGGAACCACTTTTGGTATGCATTCTAACCATTTCTTTATGTTATCCTTATGAGGTAAGGATAATAAACAATCATGGATCCATCTAGTAGTAAAAAAAGAGACAGCCTCACAAACTAACTAAAAGGTTATGAGTTCAATTGACCACCTACTAGGAGTTAATTTTCTAGAATTCCCTTCCCACACAAATGTCGTAGAGTGAAACAGGTAGTCCCACAATATTAGTTTCACACGGGTTTGAAAGCTTGGCAAATGCCATTTGTTCTTTTCATGATCTATCTTTTCTCTTATCCATCATAAATGCTAGATTACATGAACTGTTTGGTATTCGGTCATAAACATATTGACAGATTTTTTTTTGTATGTTGACAAAGATCGTCTTTTCTTTTATTCCATTGTGAATCATCGTGGAATTACCGAAAGGGAGAATAGGTTTTTGTGGCGTTTTGCCTTCCCCTGACTTGCCATCCTCTGTTGTTAAGGAGGAGCAGTGTTATACCCAATTTTGCTCGGGCTTTAATGATTTGTTTTTTAAATGTTCATCAACTAAACTTGAAACTTACCTCTTTTTTCAGATACTGCATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAGTGATTTGTAGGTACAGCATGAGAAGAAGCAAGAGGTACAATTTGTTATGTGATTTTGAGTCTTCTATGCTTGTAACTCACGTGGGAGTGTTGAACTGCTAATCTATTAAAAGAACTCCTGTTTTGGTCAATATGTATTGTACTAAGCTATAAGCTAGGAGCTAGGTACGGAATTTTCATGGACTTCTTAAGGTTCCAATTTTCACATTTTTCACTAGGAAAAACCTAAGTGTAGTTGGGTGCACACATCTTTTGTATAGTTCGACTGCCATCCAATTAGAATGTGTTAGGTTGCAGTTGCACTTTGTCGTTGGTCTTTTTCATTGGGTCATACTATTCAATCACTAGTTTTTCTTATTTGGAAATGATTATGAAATGGTGAAAATTCATTTTCATTATCCAAAAGCTACTCCGAATACATATTCAATGGTTTGAAATCAATTTAGGTCTTTTAGTTTTAGACCAAGGACAACCATTTTTATGCCAATAGCAAACACCTTTTTGTGATTGAAG

Coding sequence (CDS)

ATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATTGTTACGGGAAAGTCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACGGTCCCTCACATGAACTTCGTAGAGGTAGTTGGTATTGCTGAAAGCAACAAGACCATCAAGGTTGAAGATTGGACAGACTTTGGAACCACTTTTGATACTGCATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAG

Protein sequence

MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI
Homology
[Close]
BLAST of Cucsat.G10417 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.1e-32
Identity = 63/106 (59.43%), Postives = 83/106 (78.30%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 107
           +EV+GIAE++ TI+ E WT+FG +FD  +YN+LC+LANGEFR LFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]
BLAST of Cucsat.G10417 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-28
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMN 60
           MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 107
           ++EV+GIAES+  I+ E WT+FG TFDT +YN+LC+LANGEF+ LFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]
BLAST of Cucsat.G10417 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-27
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTS PA FVNGE+L M  GR++R VVQ  + +GG++ G+STD  QLTI G    P  ++
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 107
           VE++GIAE N+ I+ E  TDFG  FD A +N LC+LANG+ + LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]
BLAST of Cucsat.G10417 vs. NCBI nr
Match: XP_004135037.1 (replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replication protein A 14 kDa subunit B [Cucumis sativus] >XP_031740923.1 replication protein A 14 kDa subunit B [Cucumis sativus] >KGN52188.1 hypothetical protein Csa_008262 [Cucumis sativus])

HSP 1 Score: 216 bits (551), Expect = 6.13e-71
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417 vs. NCBI nr
Match: XP_008446755.1 (PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446756.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >KAA0034652.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa] >TYK09203.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (531), Expect = 6.91e-68
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417 vs. NCBI nr
Match: XP_038893019.1 (replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 replication protein A 14 kDa subunit B-like [Benincasa hispida])

HSP 1 Score: 199 bits (506), Expect = 4.50e-64
Identity = 99/106 (93.40%), Postives = 100/106 (94.34%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTI GLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIRGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAE+NK I VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAEANKIINVEHWTDFGTTFDTQSYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417 vs. NCBI nr
Match: XP_023539791.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187 bits (476), Expect = 1.70e-59
Identity = 91/106 (85.85%), Postives = 96/106 (90.57%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL++H GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNVHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAE NK I VE WTDFGTTFD  SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTTFDAQSYNQLCQLANGEFRSLFM 106

[Close]
BLAST of Cucsat.G10417 vs. NCBI nr
Match: XP_022988152.1 (replication protein A 14 kDa subunit B-like [Cucurbita maxima])

HSP 1 Score: 184 bits (468), Expect = 2.82e-58
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAE NK I VE WTDFGT FD  SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRSLFL 106

[Close]
BLAST of Cucsat.G10417 vs. ExPASy TrEMBL
Match: A0A0A0KRF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1)

HSP 1 Score: 216 bits (551), Expect = 2.97e-71
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417 vs. ExPASy TrEMBL
Match: A0A1S3BGM8 (replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489388 PE=3 SV=1)

HSP 1 Score: 209 bits (531), Expect = 3.34e-68
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417 vs. ExPASy TrEMBL
Match: A0A5A7SU42 (Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001960 PE=3 SV=1)

HSP 1 Score: 209 bits (531), Expect = 3.34e-68
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417 vs. ExPASy TrEMBL
Match: A0A6J1JC99 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111485454 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 1.36e-58
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAE NK I VE WTDFGT FD  SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRSLFL 106

[Close]
BLAST of Cucsat.G10417 vs. ExPASy TrEMBL
Match: A0A6J1D9X1 (replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LOC111018714 PE=3 SV=1)

HSP 1 Score: 172 bits (437), Expect = 7.28e-54
Identity = 83/106 (78.30%), Postives = 92/106 (86.79%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+HGLP VP MNF
Sbjct: 1   MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEV+GIAESNK I VE  TDFG TFD  SYNQLCQLANGEF+S+F+
Sbjct: 61  VEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 106

The following BLAST results are available for this feature:
BLAST of Cucsat.G10417 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NLG75.1e-3259.43Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ... [more]
Q9LXK13.4e-2855.14Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ... [more]
Q9SDK92.2e-2752.83Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
BLAST of Cucsat.G10417 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135037.16.13e-71100.00replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replica... [more]
XP_008446755.16.91e-6896.23PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446... [more]
XP_038893019.14.50e-6493.40replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 ... [more]
XP_023539791.11.70e-5985.85replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo][more]
XP_022988152.12.82e-5884.91replication protein A 14 kDa subunit B-like [Cucurbita maxima][more]
BLAST of Cucsat.G10417 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRF22.97e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1[more]
A0A1S3BGM83.34e-6896.23replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489... [more]
A0A5A7SU423.34e-6896.23Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1JC991.36e-5884.91replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1D9X17.28e-5478.30replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LO... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..106
e-value: 4.1E-19
score: 70.6
NoneNo IPR availablePANTHERPTHR47058REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATEDcoord: 1..106
NoneNo IPR availablePANTHERPTHR47058:SF1NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 1..106
NoneNo IPR availableCDDcd04479RPA3coord: 6..105
e-value: 5.11418E-25
score: 88.4741
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 1..99
e-value: 3.8E-19
score: 69.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 6..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G10417.T1Cucsat.G10417.T1mRNA
Cucsat.G10417.T2Cucsat.G10417.T2mRNA
Cucsat.G10417.T5Cucsat.G10417.T5mRNA
Cucsat.G10417.T8Cucsat.G10417.T8mRNA
Cucsat.G10417.T11Cucsat.G10417.T11mRNA
Cucsat.G10417.T3Cucsat.G10417.T3mRNA
Cucsat.G10417.T7Cucsat.G10417.T7mRNA
Cucsat.G10417.T4Cucsat.G10417.T4mRNA
Cucsat.G10417.T6Cucsat.G10417.T6mRNA
Cucsat.G10417.T14Cucsat.G10417.T14mRNA
Cucsat.G10417.T9Cucsat.G10417.T9mRNA
Cucsat.G10417.T13Cucsat.G10417.T13mRNA
Cucsat.G10417.T12Cucsat.G10417.T12mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0031981 nuclear lumen
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding