Cucsat.G10417.T14 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G10417.T14
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Replication protein A 14 kDa subunit B-like
Location	ctg1676: 39056 .. 41390 (+)
RNA-Seq Expression	Cucsat.G10417.T14
Synteny	Cucsat.G10417.T14

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGTCTCACAGGTACGCATTAGAAATGGTTCTGAGCCACCAGATTTAGGGTTTGAGACTCTCTCCTACTTAGATCGTTCAGTTATGTAACAACTTGAACTTCTTCTATATTGTACGTAAGGTAGTTGCTGTGATAATCTGTTCGAAATGTTTCATTTGATCGATTGTAATCTTCTTCGCACAAAACAGTGTAATTGATTGCTCTTTCCGTGTTTGTTTCTTTTAAAGTTGGATTCTGTTTCTGCATCAATTTTGTTATACGCAACGCCATGAGTTGAGCAGAGTTACTACAGGTCATGATATTAATTGTCTGTTGTGCTAAATGTTATAGTTGCATTAAGTTGTTTGTTCCTGATGTTTTACCGTTGAGACTAAAGGATGATGTTTATTTATTTGGTGAAAGACATTTTACTTCTGTGGAATAGAGTTCTTAATTTGCTTTCCAACGCTTTTGCTTTATCCCTTGAATGTAGAAGGAGTGCTATCATATTAGATTTATAAGGGGGAAATCCCTTTATAATTATAATCTAAACATTGAACTTGTTGATCCAAGCCTTTAACTTTGAACATTGAATCAATTTAGACCTTTCCGATTAGAATTAGTTTTAATACTGTTAATGCAACCTAGCTACTTTGGTAATTTGTTGAATGCCATTATTTATAGATGATTTCGAACTTTTTAAATGGATGTAAAAATAGCTATTGATTACTAGTAATTGATTTGAATTGATTCATTGTTTATATTTTAAATTGATACAAATATAGTTTGACGTTTAGTGATACAATCTCCAAAGTTCAAGGGTAAAACTATAAACTGATTTTTGCCTTGATTTATTCAATTTGTAAGTGTAGACTACACATGTTTCCAGTTAATTTAGTCTGGATTGAACATTATACTGTCGTGATGTTATCACACTAACTGTACTATCCCAAGCATCATGCCATTCGTCATTGTTGATTTTTCAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATTGTTACGGGAAAGTCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACGGTCCCTCACATGAACTTCGTAGAGGTAGTTGGTATTGCTGAAAGCAACAAGACCATCAAGGTTGAAGATTGGACAGACTTTGGAACCACTTTTGGTATGCATTCTAACCATTTCTTTATGTTATCCTTATGAGGTAAGGATAATAAACAATCATGGATCCATCTAGTAGTAAAAAAAGAGACAGCCTCACAAACTAACTAAAAGGTTATGAGTTCAATTGACCACCTACTAGGAGTTAATTTTCTAGAATTCCCTTCCCACACAAATGTCGTAGAGTGAAACAGGTAGTCCCACAATATTAGTTTCACACGGGTTTGAAAGCTTGGCAAATGCCATTTGTTCTTTTCATGATCTATCTTTTCTCTTATCCATCATAAATGCTAGATTACATGAACTGTTTGGTATTCGGTCATAAACATATTGACAGATTTTTTTTTGTATGTTGACAAAGATCGTCTTTTCTTTTATTCCATTGTGAATCATCGTGGAATTACCGAAAGGGAGAATAGGTTTTTGTGGCGTTTTGCCTTCCCCTGACTTGCCATCCTCTGTTGTTAAGGAGGAGCAGTGTTATACCCAATTTTGCTCGGGCTTTAATGATTTGTTTTTTAAATGTTCATCAACTAAACTTGAAACTTACCTCTTTTTTCAGATACTGCATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAGTGATTTGTAGGTACAGCATGAGAAGAAGCAAGAGGTACAATTTGTTATGTGATTTTGAGTCTTCTATGCTTGTAACTCACGTGGGAGTGTTGAACTGCTAATCTATTAAAAGAACTCCTGTTTTGGTCAATATGTATTGTACTAAGCTATAAGCTAGGAGCTAGGTACGGAATTTTCATGGACTTCTTAAGGTTCCAATTTTCACATTTTTCACTAGGAAAAACCTAAGTGTAGTTGGGTGCACACATCTTTTGTATAGTTCGACTGCCATCCAATTAGAATGTGTTAGGTTGCAGTTGCACTTTGTCGTTGGTCTTTTTCATTGGGTCATACTATTCAATCACTAGTTTTTCTTATTTGGAAATGATTATGAAATGGTGAAAATTCATTTTCATTATCCAAAAGCTACTCCGAATACATATTCAATGGTTTGAAATCAATTTAGGTCTTTTAGTTTTAGACCAAGGACAACCATTTTTATGCCAAT

Coding sequence (CDS)

GTCGTCTCACAGGTACGCATTAGAAATGGTTCTGAGCCACCAGATTTAGGGTTTGAGACTCTCTCCTACTTAGATCGTTCAGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATTGTTACGGGAAAGTCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACGGTCCCTCACATGAACTTCGTAGAGGTAGTTGGTATTGCTGAAAGCAACAAGACCATCAAGGTTGAAGATTGGACAGACTTTGGAACCACTTTTGATACTGCATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAG

Protein sequence

VVSQVRIRNGSEPPDLGFETLSYLDRSDMDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI

Homology

[Close]

BLAST of Cucsat.G10417.T14 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.5e-32
Identity = 63/106 (59.43%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 135
           +EV+GIAE++ TI+ E WT+FG +FD  +YN+LC+LANGEFR LFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of Cucsat.G10417.T14 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.7e-28
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMN 88
           MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 89  FVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 135
           ++EV+GIAES+  I+ E WT+FG TFDT +YN+LC+LANGEF+ LFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of Cucsat.G10417.T14 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.7e-27
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTS PA FVNGE+L M  GR++R VVQ  + +GG++ G+STD  QLTI G    P  ++
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 135
           VE++GIAE N+ I+ E  TDFG  FD A +N LC+LANG+ + LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]

BLAST of Cucsat.G10417.T14 vs. NCBI nr
Match: XP_004135037.1 (replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replication protein A 14 kDa subunit B [Cucumis sativus] >XP_031740923.1 replication protein A 14 kDa subunit B [Cucumis sativus] >KGN52188.1 hypothetical protein Csa_008262 [Cucumis sativus])

HSP 1 Score: 216 bits (550), Expect = 2.74e-70
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 134
           VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]

BLAST of Cucsat.G10417.T14 vs. NCBI nr
Match: XP_008446755.1 (PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446756.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >KAA0034652.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa] >TYK09203.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (530), Expect = 3.08e-67
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 134
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]

BLAST of Cucsat.G10417.T14 vs. NCBI nr
Match: XP_038893019.1 (replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 replication protein A 14 kDa subunit B-like [Benincasa hispida])

HSP 1 Score: 199 bits (505), Expect = 2.00e-63
Identity = 99/106 (93.40%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTI GLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIRGLPTVPLMNF 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 134
           VEVVGIAE+NK I VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAEANKIINVEHWTDFGTTFDTQSYNQLCQLANGEFRSLFI 106

[Close]

BLAST of Cucsat.G10417.T14 vs. NCBI nr
Match: XP_023539791.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187 bits (475), Expect = 7.47e-59
Identity = 91/106 (85.85%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTSNPAVF NGELL++H GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNVHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 134
           VEVVGIAE NK I VE WTDFGTTFD  SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTTFDAQSYNQLCQLANGEFRSLFM 106

[Close]

BLAST of Cucsat.G10417.T14 vs. NCBI nr
Match: XP_022988152.1 (replication protein A 14 kDa subunit B-like [Cucurbita maxima])

HSP 1 Score: 184 bits (467), Expect = 1.24e-57
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 134
           VEVVGIAE NK I VE WTDFGT FD  SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRSLFL 106

[Close]

BLAST of Cucsat.G10417.T14 vs. ExPASy TrEMBL
Match: A0A0A0KRF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1)

HSP 1 Score: 216 bits (550), Expect = 1.33e-70
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 134
           VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]

BLAST of Cucsat.G10417.T14 vs. ExPASy TrEMBL
Match: A0A1S3BGM8 (replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489388 PE=3 SV=1)

HSP 1 Score: 208 bits (530), Expect = 1.49e-67
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 134
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]

BLAST of Cucsat.G10417.T14 vs. ExPASy TrEMBL
Match: A0A5A7SU42 (Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001960 PE=3 SV=1)

HSP 1 Score: 208 bits (530), Expect = 1.49e-67
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 134
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]

BLAST of Cucsat.G10417.T14 vs. ExPASy TrEMBL
Match: A0A6J1JC99 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111485454 PE=3 SV=1)

HSP 1 Score: 184 bits (467), Expect = 5.99e-58
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 134
           VEVVGIAE NK I VE WTDFGT FD  SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRSLFL 106

[Close]

BLAST of Cucsat.G10417.T14 vs. ExPASy TrEMBL
Match: A0A6J1D9X1 (replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LOC111018714 PE=3 SV=1)

HSP 1 Score: 172 bits (436), Expect = 3.17e-53
Identity = 83/106 (78.30%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 29  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 88
           MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+HGLP VP MNF
Sbjct: 1   MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60

Query: 89  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 134
           VEV+GIAESNK I VE  TDFG TFD  SYNQLCQLANGEF+S+F+
Sbjct: 61  VEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 106

The following BLAST results are available for this feature:

BLAST of Cucsat.G10417.T14 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLG7	8.5e-32	59.43	Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ...	[more]
Q9LXK1	5.7e-28	55.14	Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ...	[more]
Q9SDK9	3.7e-27	52.83	Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Cucsat.G10417.T14 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135037.1	2.74e-70	100.00	replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replica...	[more]
XP_008446755.1	3.08e-67	96.23	PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446...	[more]
XP_038893019.1	2.00e-63	93.40	replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 ...	[more]
XP_023539791.1	7.47e-59	85.85	replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022988152.1	1.24e-57	84.91	replication protein A 14 kDa subunit B-like [Cucurbita maxima]	[more]

BLAST of Cucsat.G10417.T14 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRF2	1.33e-70	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1	[more]
A0A1S3BGM8	1.49e-67	96.23	replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489...	[more]
A0A5A7SU42	1.49e-67	96.23	Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1JC99	5.99e-58	84.91	replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1D9X1	3.17e-53	78.30	replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LO...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013970	Replication factor A protein 3	PFAM	PF08661	Rep_fac-A_3	coord: 29..127 e-value: 8.8E-19 score: 67.8
None	No IPR available	GENE3D	2.40.50.140		coord: 29..134 e-value: 9.5E-19 score: 69.4
None	No IPR available	PANTHER	PTHR47058	REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED	coord: 29..134
None	No IPR available	PANTHER	PTHR47058:SF1	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 29..134
None	No IPR available	CDD	cd04479	RPA3	coord: 34..133 e-value: 1.04851E-24 score: 88.8593
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 34..133

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G10417	Cucsat.G10417	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G10417.T14.E1	Cucsat.G10417.T14.E1	exon
Cucsat.G10417.T14.E2	Cucsat.G10417.T14.E2	exon
Cucsat.G10417.T14.E3	Cucsat.G10417.T14.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G10417.T14.C1	Cucsat.G10417.T14.C1	CDS
Cucsat.G10417.T14.C2	Cucsat.G10417.T14.C2	CDS
Cucsat.G10417.T14.C3	Cucsat.G10417.T14.C3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G10417.T14	Cucsat.G10417.T14-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
cellular_component	GO:0031981	nuclear lumen
molecular_function	GO:0003677	DNA binding