Cucsat.G10417.T13 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G10417.T13
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionReplication protein A 14 kDa subunit B-like
Locationctg1676: 39061 .. 41390 (+)
RNA-Seq ExpressionCucsat.G10417.T13
SyntenyCucsat.G10417.T13
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCACAGGTACGCATTAGAAATGGTTCTGAGCCACCAGATTTAGGGTTTGAGACTCTCTCCTACTTAGATCGTTCAGTTATGTAACAACTTGAACTTCTTCTATATTGTACGTAAGGTAGTTGCTGTGATAATCTGTTCGAAATGTTTCATTTGATCGATTGTAATCTTCTTCGCACAAAACAGTGTAATTGATTGCTCTTTCCGTGTTTGTTTCTTTTAAAGTTGGATTCTGTTTCTGCATCAATTTTGTTATACGCAACGCCATGAGTTGAGCAGAGTTACTACAGGTCATGATATTAATTGTCTGTTGTGCTAAATGTTATAGTTGCATTAAGTTGTTTGTTCCTGATGTTTTACCGTTGAGACTAAAGGATGATGTTTATTTATTTGGTGAAAGACATTTTACTTCTGTGGAATAGAGTTCTTAATTTGCTTTCCAACGCTTTTGCTTTATCCCTTGAATGTAGAAGGAGTGCTATCATATTAGATTTATAAGGGGGAAATCCCTTTATAATTATAATCTAAACATTGAACTTGTTGATCCAAGCCTTTAACTTTGAACATTGAATCAATTTAGACCTTTCCGATTAGAATTAGTTTTAATACTGTTAATGCAACCTAGCTACTTTGGTAATTTGTTGAATGCCATTATTTATAGATGATTTCGAACTTTTTAAATGGATGTAAAAATAGCTATTGATTACTAGTAATTGATTTGAATTGATTCATTGTTTATATTTTAAATTGATACAAATATAGTTTGACGTTTAGTGATACAATCTCCAAAGTTCAAGGGTAAAACTATAAACTGATTTTTGCCTTGATTTATTCAATTTGTAAGTGTAGACTACACATGTTTCCAGTTAATTTAGTCTGGATTGAACATTATACTGTCGTGATGTTATCACACTAACTGTACTATCCCAAGCATCATGCCATTCGTCATTGTTGATTTTTCAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATTGTTACGGGAAAGTCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACGGTCCCTCACATGAACTTCGTAGAGGTAGTTGGTATTGCTGAAAGCAACAAGACCATCAAGGTTGAAGATTGGACAGACTTTGGAACCACTTTTGGTATGCATTCTAACCATTTCTTTATGTTATCCTTATGAGGTAAGGATAATAAACAATCATGGATCCATCTAGTAGTAAAAAAAGAGACAGCCTCACAAACTAACTAAAAGGTTATGAGTTCAATTGACCACCTACTAGGAGTTAATTTTCTAGAATTCCCTTCCCACACAAATGTCGTAGAGTGAAACAGGTAGTCCCACAATATTAGTTTCACACGGGTTTGAAAGCTTGGCAAATGCCATTTGTTCTTTTCATGATCTATCTTTTCTCTTATCCATCATAAATGCTAGATTACATGAACTGTTTGGTATTCGGTCATAAACATATTGACAGATTTTTTTTTGTATGTTGACAAAGATCGTCTTTTCTTTTATTCCATTGTGAATCATCGTGGAATTACCGAAAGGGAGAATAGGTTTTTGTGGCGTTTTGCCTTCCCCTGACTTGCCATCCTCTGTTGTTAAGGAGGAGCAGTGTTATACCCAATTTTGCTCGGGCTTTAATGATTTGTTTTTTAAATGTTCATCAACTAAACTTGAAACTTACCTCTTTTTTCAGATACTGCATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAGTGATTTGTAGGTACAGCATGAGAAGAAGCAAGAGGTACAATTTGTTATGTGATTTTGAGTCTTCTATGCTTGTAACTCACGTGGGAGTGTTGAACTGCTAATCTATTAAAAGAACTCCTGTTTTGGTCAATATGTATTGTACTAAGCTATAAGCTAGGAGCTAGGTACGGAATTTTCATGGACTTCTTAAGGTTCCAATTTTCACATTTTTCACTAGGAAAAACCTAAGTGTAGTTGGGTGCACACATCTTTTGTATAGTTCGACTGCCATCCAATTAGAATGTGTTAGGTTGCAGTTGCACTTTGTCGTTGGTCTTTTTCATTGGGTCATACTATTCAATCACTAGTTTTTCTTATTTGGAAATGATTATGAAATGGTGAAAATTCATTTTCATTATCCAAAAGCTACTCCGAATACATATTCAATGGTTTGAAATCAATTTAGGTCTTTTAGTTTTAGACCAAGGACAACCATTTTTATGCCAAT

Coding sequence (CDS)

ATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATTGTTACGGGAAAGTCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACGGTCCCTCACATGAACTTCGTAGAGGTAGTTGGTATTGCTGAAAGCAACAAGACCATCAAGGTTGAAGATTGGACAGACTTTGGAACCACTTTTGATACTGCATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAG

Protein sequence

MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI
Homology
[Close]
BLAST of Cucsat.G10417.T13 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.1e-32
Identity = 63/106 (59.43%), Postives = 83/106 (78.30%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 107
           +EV+GIAE++ TI+ E WT+FG +FD  +YN+LC+LANGEFR LFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]
BLAST of Cucsat.G10417.T13 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-28
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMN 60
           MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 107
           ++EV+GIAES+  I+ E WT+FG TFDT +YN+LC+LANGEF+ LFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]
BLAST of Cucsat.G10417.T13 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-27
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTS PA FVNGE+L M  GR++R VVQ  + +GG++ G+STD  QLTI G    P  ++
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 107
           VE++GIAE N+ I+ E  TDFG  FD A +N LC+LANG+ + LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]
BLAST of Cucsat.G10417.T13 vs. NCBI nr
Match: XP_004135037.1 (replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replication protein A 14 kDa subunit B [Cucumis sativus] >XP_031740923.1 replication protein A 14 kDa subunit B [Cucumis sativus] >KGN52188.1 hypothetical protein Csa_008262 [Cucumis sativus])

HSP 1 Score: 216 bits (551), Expect = 6.13e-71
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417.T13 vs. NCBI nr
Match: XP_008446755.1 (PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446756.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >KAA0034652.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa] >TYK09203.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (531), Expect = 6.91e-68
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417.T13 vs. NCBI nr
Match: XP_038893019.1 (replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 replication protein A 14 kDa subunit B-like [Benincasa hispida])

HSP 1 Score: 199 bits (506), Expect = 4.50e-64
Identity = 99/106 (93.40%), Postives = 100/106 (94.34%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTI GLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIRGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAE+NK I VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAEANKIINVEHWTDFGTTFDTQSYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417.T13 vs. NCBI nr
Match: XP_023539791.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187 bits (476), Expect = 1.70e-59
Identity = 91/106 (85.85%), Postives = 96/106 (90.57%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL++H GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNVHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAE NK I VE WTDFGTTFD  SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTTFDAQSYNQLCQLANGEFRSLFM 106

[Close]
BLAST of Cucsat.G10417.T13 vs. NCBI nr
Match: XP_022988152.1 (replication protein A 14 kDa subunit B-like [Cucurbita maxima])

HSP 1 Score: 184 bits (468), Expect = 2.82e-58
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAE NK I VE WTDFGT FD  SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRSLFL 106

[Close]
BLAST of Cucsat.G10417.T13 vs. ExPASy TrEMBL
Match: A0A0A0KRF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1)

HSP 1 Score: 216 bits (551), Expect = 2.97e-71
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417.T13 vs. ExPASy TrEMBL
Match: A0A1S3BGM8 (replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489388 PE=3 SV=1)

HSP 1 Score: 209 bits (531), Expect = 3.34e-68
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417.T13 vs. ExPASy TrEMBL
Match: A0A5A7SU42 (Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001960 PE=3 SV=1)

HSP 1 Score: 209 bits (531), Expect = 3.34e-68
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Cucsat.G10417.T13 vs. ExPASy TrEMBL
Match: A0A6J1JC99 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111485454 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 1.36e-58
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEVVGIAE NK I VE WTDFGT FD  SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRSLFL 106

[Close]
BLAST of Cucsat.G10417.T13 vs. ExPASy TrEMBL
Match: A0A6J1D9X1 (replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LOC111018714 PE=3 SV=1)

HSP 1 Score: 172 bits (437), Expect = 7.28e-54
Identity = 83/106 (78.30%), Postives = 92/106 (86.79%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+HGLP VP MNF
Sbjct: 1   MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106
           VEV+GIAESNK I VE  TDFG TFD  SYNQLCQLANGEF+S+F+
Sbjct: 61  VEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 106

The following BLAST results are available for this feature:
BLAST of Cucsat.G10417.T13 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NLG75.1e-3259.43Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ... [more]
Q9LXK13.4e-2855.14Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ... [more]
Q9SDK92.2e-2752.83Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
BLAST of Cucsat.G10417.T13 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135037.16.13e-71100.00replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replica... [more]
XP_008446755.16.91e-6896.23PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446... [more]
XP_038893019.14.50e-6493.40replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 ... [more]
XP_023539791.11.70e-5985.85replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo][more]
XP_022988152.12.82e-5884.91replication protein A 14 kDa subunit B-like [Cucurbita maxima][more]
BLAST of Cucsat.G10417.T13 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRF22.97e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1[more]
A0A1S3BGM83.34e-6896.23replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489... [more]
A0A5A7SU423.34e-6896.23Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1JC991.36e-5884.91replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1D9X17.28e-5478.30replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LO... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..106
e-value: 4.1E-19
score: 70.6
NoneNo IPR availablePANTHERPTHR47058REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATEDcoord: 1..106
NoneNo IPR availablePANTHERPTHR47058:SF1NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 1..106
NoneNo IPR availableCDDcd04479RPA3coord: 6..105
e-value: 5.11418E-25
score: 88.4741
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 1..99
e-value: 3.8E-19
score: 69.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 6..105

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G10417Cucsat.G10417gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G10417.T13.E1Cucsat.G10417.T13.E1exon
Cucsat.G10417.T13.E2Cucsat.G10417.T13.E2exon
Cucsat.G10417.T13.E3Cucsat.G10417.T13.E3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G10417.T13.C1Cucsat.G10417.T13.C1CDS
Cucsat.G10417.T13.C2Cucsat.G10417.T13.C2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G10417.T13Cucsat.G10417.T13-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
cellular_component GO:0031981 nuclear lumen
molecular_function GO:0003677 DNA binding