Csor.00g209450 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g209450
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr05: 8729294 .. 8729548 (-)
RNA-Seq ExpressionCsor.00g209450
SyntenyCsor.00g209450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCATCCAACGACGAGAGACGAAAGCCGAAGTCACCCTCATGTTGCTTCTCGATCTCCACCTTGTTCAAGTCTCGAGCCCGTAGAAAGAGGTGGGACGACGATGCGATTGCAATGGAAGATACACGAAAGGTGTGGCCAAGTGATGACGACAAAGGTCGACACTGGGTGGCTGAGCCTGGCATCGATAGAAAAGCCAAAGCTTATATCGATAGGATCCATTATCAAATCCGCTACTCCGTAGCCGAATGA

mRNA sequence

ATGGCCTCATCCAACGACGAGAGACGAAAGCCGAAGTCACCCTCATGTTGCTTCTCGATCTCCACCTTGTTCAAGTCTCGAGCCCGTAGAAAGAGGTGGGACGACGATGCGATTGCAATGGAAGATACACGAAAGGTGTGGCCAAGTGATGACGACAAAGGTCGACACTGGGTGGCTGAGCCTGGCATCGATAGAAAAGCCAAAGCTTATATCGATAGGATCCATTATCAAATCCGCTACTCCGTAGCCGAATGA

Coding sequence (CDS)

ATGGCCTCATCCAACGACGAGAGACGAAAGCCGAAGTCACCCTCATGTTGCTTCTCGATCTCCACCTTGTTCAAGTCTCGAGCCCGTAGAAAGAGGTGGGACGACGATGCGATTGCAATGGAAGATACACGAAAGGTGTGGCCAAGTGATGACGACAAAGGTCGACACTGGGTGGCTGAGCCTGGCATCGATAGAAAAGCCAAAGCTTATATCGATAGGATCCATTATCAAATCCGCTACTCCGTAGCCGAATGA

Protein sequence

MASSNDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWVAEPGIDRKAKAYIDRIHYQIRYSVAE
Homology
BLAST of Csor.00g209450 vs. NCBI nr
Match: KAG6599163.1 (hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176 bits (447), Expect = 9.15e-56
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MASSNDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWVAE 60
          MASSNDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWVAE
Sbjct: 1  MASSNDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWVAE 60

Query: 61 PGIDRKAKAYIDRIHYQIRYSVAE 84
          PGIDRKAKAYIDRIHYQIRYSVAE
Sbjct: 61 PGIDRKAKAYIDRIHYQIRYSVAE 84

BLAST of Csor.00g209450 vs. NCBI nr
Match: KAA0056089.1 (hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ96428.1 hypothetical protein E5676_scaffold546G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 8.80e-34
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1  MASS--NDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWV 60
          MASS  N  +++PKS SCCFSI  LFKSR   KRWDD A+ M+DTRKVWPSD DKGRHWV
Sbjct: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDD-AMTMDDTRKVWPSDGDKGRHWV 60

Query: 61 AEPGIDRKAKAYIDRIHYQIRYS 81
          AEPGIDRKAKAYI++IH+QIR S
Sbjct: 61 AEPGIDRKAKAYIEKIHHQIRSS 82

BLAST of Csor.00g209450 vs. NCBI nr
Match: KAG6586063.1 (hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112 bits (280), Expect = 2.52e-30
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1  MASSNDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWVAE 60
          MAS+N++R+KPKSPSC FSI +LF+SR  RKR D+    ++D RKVWPSD+D+ R+WVAE
Sbjct: 1  MASTNNKRQKPKSPSCFFSIFSLFRSRDSRKRRDE---TIDDMRKVWPSDEDRDRYWVAE 60

Query: 61 PGIDRKAKAYIDRIHYQIRYSVAE 84
          PGIDRKAKAYID+IH QIR S  E
Sbjct: 61 PGIDRKAKAYIDKIHTQIRSSGTE 81

BLAST of Csor.00g209450 vs. NCBI nr
Match: XP_021898970.1 (uncharacterized protein LOC110815469 [Carica papaya])

HSP 1 Score: 77.4 bits (189), Expect = 2.31e-16
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 12 KSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWVAEPGIDRKAKAYI 71
          K  S  FSI  LFKSR   +R  DD   ++DTRKVWPSD+DK R+WVAEPGIDRKA A+I
Sbjct: 7  KKSSSSFSIFGLFKSRRSHRRGGDDQTFVDDTRKVWPSDEDK-RNWVAEPGIDRKASAFI 66

Query: 72 DRIH 75
           + H
Sbjct: 67 AKFH 69

BLAST of Csor.00g209450 vs. NCBI nr
Match: ESR41577.1 (hypothetical protein CICLE_v10013222mg [Citrus clementina])

HSP 1 Score: 73.9 bits (180), Expect = 4.98e-15
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 0

Query: 12 KSPSCCFSISTLFKSRARRKRWDDDAIAMEDT-RKVWPSDDDKGRHWVAEPGIDRKAKAY 71
          K     FS+  +FKSR   +RW+D    +  T RK+WPSD+DKG +WVAEPGIDRKA A+
Sbjct: 5  KQKKSSFSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEPGIDRKASAF 64

Query: 72 IDRIHYQIRYSVAE 84
          I + H + R S +E
Sbjct: 65 ITKFH-EARISESE 77

BLAST of Csor.00g209450 vs. ExPASy TrEMBL
Match: A0A5D3BDY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00610 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 4.26e-34
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1  MASS--NDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWV 60
          MASS  N  +++PKS SCCFSI  LFKSR   KRWDD A+ M+DTRKVWPSD DKGRHWV
Sbjct: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDD-AMTMDDTRKVWPSDGDKGRHWV 60

Query: 61 AEPGIDRKAKAYIDRIHYQIRYS 81
          AEPGIDRKAKAYI++IH+QIR S
Sbjct: 61 AEPGIDRKAKAYIEKIHHQIRSS 82

BLAST of Csor.00g209450 vs. ExPASy TrEMBL
Match: A0A0A0LJ24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 2.47e-33
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1  MASS--NDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWV 60
          MASS  N  +++ KS SCCFSI +LFKSR   KRWDD A+ M+DTRKVWPSD DKGRHWV
Sbjct: 1  MASSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDD-AMTMDDTRKVWPSDGDKGRHWV 60

Query: 61 AEPGIDRKAKAYIDRIHYQIRYS 81
          AEPGIDRKAKAYI++IH+QIR S
Sbjct: 61 AEPGIDRKAKAYIEKIHHQIRSS 82

BLAST of Csor.00g209450 vs. ExPASy TrEMBL
Match: V4SLM0 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.41e-15
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 0

Query: 12 KSPSCCFSISTLFKSRARRKRWDDDAIAMEDT-RKVWPSDDDKGRHWVAEPGIDRKAKAY 71
          K     FS+  +FKSR   +RW+D    +  T RK+WPSD+DKG +WVAEPGIDRKA A+
Sbjct: 5  KQKKSSFSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEPGIDRKASAF 64

Query: 72 IDRIHYQIRYSVAE 84
          I + H + R S +E
Sbjct: 65 ITKFH-EARISESE 77

BLAST of Csor.00g209450 vs. ExPASy TrEMBL
Match: A0A2H5NTQ0 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_073840 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.42e-15
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 0

Query: 12 KSPSCCFSISTLFKSRARRKRWDDDAIAMEDT-RKVWPSDDDKGRHWVAEPGIDRKAKAY 71
          K     FS+  +FKSR   +RW+D    +  T RK+WPSD+DKG +WVAEPGIDRKA A+
Sbjct: 5  KQKKSSFSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEPGIDRKASAF 64

Query: 72 IDRIHYQIRYSVAE 84
          I + H + R S +E
Sbjct: 65 IAKFH-EARISESE 77

BLAST of Csor.00g209450 vs. ExPASy TrEMBL
Match: A0A067E306 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.39e-14
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 12 KSPSCCFSISTLFKSRARRKRWDD--DAIAMEDTRKVWPSDDDKGRHWVAEPGIDRKAKA 71
          K     FS+  +FKSR   +RW+D  D +     RK+WPSD+DKG +WVAEPGIDRKA A
Sbjct: 5  KQKKSSFSLLNMFKSRRTNRRWEDPWDDVGSA-PRKIWPSDEDKGAYWVAEPGIDRKASA 64

Query: 72 YIDRIH 75
          +I + H
Sbjct: 65 FIAKFH 69

BLAST of Csor.00g209450 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 0

Query: 18 FSISTLFKSRARRK-----RWDDDAIAMEDTRKVWPSDDDKGRHWVAEPGIDRKAKAYID 76
          FS+ + FK+R   +      WDD       TRK   SD+DK R+WVAEPGIDRKA A+I 
Sbjct: 13 FSLFSFFKTRRSHRVEADGSWDDFGY----TRKAMASDEDK-RYWVAEPGIDRKASAFIA 70

BLAST of Csor.00g209450 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 33 WDDDAIAMEDTRKVWPSDDDKGRHWVAEPGIDRKAKAYIDRIH 76
          WDD    +  TRK W SD+DK R+WVAEPGIDRKA A+I + H
Sbjct: 17 WDD----VIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFH 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6599163.19.15e-56100.00hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0056089.18.80e-3473.49hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ9642... [more]
KAG6586063.12.52e-3066.67hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021898970.12.31e-1660.94uncharacterized protein LOC110815469 [Carica papaya][more]
ESR41577.14.98e-1550.00hypothetical protein CICLE_v10013222mg [Citrus clementina][more]
Match NameE-valueIdentityDescription
A0A5D3BDY24.26e-3473.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LJ242.47e-3372.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1[more]
V4SLM02.41e-1550.00Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 ... [more]
A0A2H5NTQ03.42e-1550.00Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_073840 PE=4 SV=1[more]
A0A067E3061.39e-1451.52Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G05858.11.6e-0747.62unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.11.6e-0760.47unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 5..77
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 5..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g209450.m01Csor.00g209450.m01mRNA