Csor.00g184210 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g184210
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionTransmembrane protein, putative
LocationCsor_Chr14: 14762855 .. 14763480 (+)
RNA-Seq ExpressionCsor.00g184210
SyntenyCsor.00g184210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATGTAAGAAATTCTGCAACCTAAACTAGTTTCGGTATAGGAGAAGAATCGTTCCACGGAACAAATCAGAAGCTAAACTAATGCAACAAAAAATTGAGAGTCGAAATTCAAATAGGATATAGAGAAAATTTTGAGCGTACCTTTCAGTTTTCGCCTTTCAAGGGAAGAAGAAGAAGAAAGAAGAAGACGAGGAAGAGGAAGAAGGAGCAGAAGAAAAGTGATTACATTAGGGAGGTGACGTGGCAAAAGTCAACAGTTCCACGTAGAGAGAGGTTTTGACTCAGCTAGGTCGACGTGTAGTTGTACGCTTGTTCCGTTCCTTCTTAGAAATTTCGACATGTCGTTCAACTCACATTTTTAAGTACAGCAAGTAAAATCATAGATAAAACGAAATGATCTCGTTCGTTTAGGGACGGCGGCGAAGAGAACCGATGAAGGAAGCAGCGAAGTTGAATGCGGTGAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACACCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAGGTTCTCTTCAACATCCCAATTCTGAGCCCTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

mRNA sequence

ATGGCAAATGGACGGCGGCGAAGAGAACCGATGAAGGAAGCAGCGAAGTTGAATGCGGTGAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACACCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAGGTTCTCTTCAACATCCCAATTCTGAGCCCTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

Coding sequence (CDS)

ATGGCAAATGGACGGCGGCGAAGAGAACCGATGAAGGAAGCAGCGAAGTTGAATGCGGTGAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACACCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAGGTTCTCTTCAACATCCCAATTCTGAGCCCTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

Protein sequence

MANGRRRREPMKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIPKDAISNRDD
Homology
BLAST of Csor.00g184210 vs. NCBI nr
Match: KAG6582279.1 (hypothetical protein SDJN03_22281, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141 bits (356), Expect = 3.02e-42
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MANGRRRREPMKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPS 60
          MANGRRRREPMKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPS
Sbjct: 1  MANGRRRREPMKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPS 60

Query: 61 TIPKDAISNRDD 72
          TIPKDAISNRDD
Sbjct: 61 TIPKDAISNRDD 72

BLAST of Csor.00g184210 vs. NCBI nr
Match: KAG7018683.1 (hypothetical protein SDJN02_20554, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131 bits (330), Expect = 5.48e-38
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0

Query: 4  GRRRREPMKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIP 63
          GRRRREPMKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQ SLQHP+SEPSTIP
Sbjct: 27 GRRRREPMKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIP 86

Query: 64 KDAISNRDD 72
          KDAISNRDD
Sbjct: 87 KDAISNRDD 95

BLAST of Csor.00g184210 vs. NCBI nr
Match: KGN57013.1 (hypothetical protein Csa_010432 [Cucumis sativus])

HSP 1 Score: 104 bits (259), Expect = 2.53e-27
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIPKDAISNR 70
          MKE AKLNA RSG+VVIGALAFGYLSL LVFKPYLEKAQ SLQHP  EPSTIPKDAISN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

BLAST of Csor.00g184210 vs. NCBI nr
Match: KAA0049387.1 (hypothetical protein E6C27_scaffold171G006320 [Cucumis melo var. makuwa] >TYK17172.1 hypothetical protein E5676_scaffold434G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 8.73e-23
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIPKDAISNR 70
          MKE AKLNA RSG+VVIGALAFGYLSL + FKPYLEKAQ  LQHP  EPSTI KDA+SN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQSYLQHPEPEPSTILKDAVSNP 60

BLAST of Csor.00g184210 vs. NCBI nr
Match: EXB55018.1 (hypothetical protein L484_007349 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 2.01e-14
Identity = 32/51 (62.75%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPST 61
          M++  K+NA+RSGVVV+GA+AFGYL+L+L FKP+LEKAQ S++H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

BLAST of Csor.00g184210 vs. ExPASy TrEMBL
Match: A0A0A0L5N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.22e-27
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIPKDAISNR 70
          MKE AKLNA RSG+VVIGALAFGYLSL LVFKPYLEKAQ SLQHP  EPSTIPKDAISN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

BLAST of Csor.00g184210 vs. ExPASy TrEMBL
Match: A0A5A7U4W2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00160 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.23e-23
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIPKDAISNR 70
          MKE AKLNA RSG+VVIGALAFGYLSL + FKPYLEKAQ  LQHP  EPSTI KDA+SN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQSYLQHPEPEPSTILKDAVSNP 60

BLAST of Csor.00g184210 vs. ExPASy TrEMBL
Match: W9R337 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007349 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.73e-15
Identity = 32/51 (62.75%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPST 61
          M++  K+NA+RSGVVV+GA+AFGYL+L+L FKP+LEKAQ S++H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

BLAST of Csor.00g184210 vs. ExPASy TrEMBL
Match: A0A4D9A3A6 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_033849 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.71e-14
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIPKDAI 67
          M+  AK NA+RSG+VVIGALAFGYL+LHL FKPYLEKAQ   QH ++  S+ P D  
Sbjct: 1  MRGTAKANAMRSGLVVIGALAFGYLTLHLGFKPYLEKAQLEQQHQSAAASSQPVDTF 57

BLAST of Csor.00g184210 vs. ExPASy TrEMBL
Match: A0A4D9BKZ9 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_022138 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.58e-13
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIPKDAI 67
          M+  AK NA+RS VVVIGALAFGYL+LHL FKPYLEKAQ   Q  ++  S+ P D  
Sbjct: 1  MRGTAKANAMRSAVVVIGALAFGYLTLHLGFKPYLEKAQLEQQRQSAAASSQPVDTF 57

BLAST of Csor.00g184210 vs. TAIR 10
Match: AT5G19151.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-07
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 0

Query: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKA-------QGSLQHPNSE 59
          MK     NA+RS VVV+G+LAFGYLSL L +KP+LEKA       Q S QH   +
Sbjct: 1  MKRTVMDNAIRSSVVVLGSLAFGYLSLELGYKPFLEKAEQYERSLQSSQQHQQQD 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6582279.13.02e-42100.00hypothetical protein SDJN03_22281, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7018683.15.48e-3897.10hypothetical protein SDJN02_20554, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN57013.12.53e-2786.89hypothetical protein Csa_010432 [Cucumis sativus][more]
KAA0049387.18.73e-2378.69hypothetical protein E6C27_scaffold171G006320 [Cucumis melo var. makuwa] >TYK171... [more]
EXB55018.12.01e-1462.75hypothetical protein L484_007349 [Morus notabilis][more]
Match NameE-valueIdentityDescription
A0A0A0L5N11.22e-2786.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1[more]
A0A5A7U4W24.23e-2378.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
W9R3379.73e-1562.75Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007349 PE=4 SV=1[more]
A0A4D9A3A61.71e-1463.16Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_033849 PE=4 SV=1[more]
A0A4D9BKZ99.58e-1361.40Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_022138 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G19151.11.8e-0752.73unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..64
NoneNo IPR availablePANTHERPTHR33982:SF4OS05G0532800 PROTEINcoord: 11..64
IPR038944Outer envelope membrane protein 7-likePANTHERPTHR33982OUTER ENVELOPE MEMBRANE PROTEIN 7-RELATEDcoord: 11..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g184210.m01Csor.00g184210.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane