Csor.00g084860 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g084860
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionmetal tolerance protein C4
LocationCsor_Chr17: 6574800 .. 6575138 (+)
RNA-Seq ExpressionCsor.00g084860
SyntenyCsor.00g084860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTTATGGAATCGTGAGATTGCTGCTGTGACAATAAAGAAGCTGGACAAAGCGAAATCAACTCTTGCACAATCGTGTTTTGATGCGAACATCCTACTTGCGACGTTTTGGTCTCCACCACTCTCACCGTTCTTCTTCCTCCGTTTTCTCGGCATTTCCTTGCCGCTTTCCTTTTTTGATTTTAAAACTCCGCAGCATCACCTGCAGCGACAACCAGAACGTGACGGTTGTGGCATTCCTCTTATCGGAGCCCGCTTTCCGTCGCAGAGACTTGCACCTGCTTCCAGTTGTTCGAGACGCTCCGTTTTATTGAGCTTGATTTCCTTGGACTCTTAA

mRNA sequence

ATGCTGTTATGGAATCGTGAGATTGCTGCTGTGACAATAAAGAAGCTGGACAAAGCGAAATCAACTCTTGCACAATCGTGTTTTGATGCGAACATCCTACTTGCGACGTTTTGGTCTCCACCACTCTCACCGTTCTTCTTCCTCCGTTTTCTCGGCATTTCCTTGCCGCTTTCCTTTTTTGATTTTAAAACTCCGCAGCATCACCTGCAGCGACAACCAGAACGTGACGGTTGTGGCATTCCTCTTATCGGAGCCCGCTTTCCGTCGCAGAGACTTGCACCTGCTTCCAGTTGTTCGAGACGCTCCGTTTTATTGAGCTTGATTTCCTTGGACTCTTAA

Coding sequence (CDS)

ATGCTGTTATGGAATCGTGAGATTGCTGCTGTGACAATAAAGAAGCTGGACAAAGCGAAATCAACTCTTGCACAATCGTGTTTTGATGCGAACATCCTACTTGCGACGTTTTGGTCTCCACCACTCTCACCGTTCTTCTTCCTCCGTTTTCTCGGCATTTCCTTGCCGCTTTCCTTTTTTGATTTTAAAACTCCGCAGCATCACCTGCAGCGACAACCAGAACGTGACGGTTGTGGCATTCCTCTTATCGGAGCCCGCTTTCCGTCGCAGAGACTTGCACCTGCTTCCAGTTGTTCGAGACGCTCCGTTTTATTGAGCTTGATTTCCTTGGACTCTTAA

Protein sequence

MLLWNREIAAVTIKKLDKAKSTLAQSCFDANILLATFWSPPLSPFFFLRFLGISLPLSFFDFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLLSLISLDS
Homology
BLAST of Csor.00g084860 vs. NCBI nr
Match: KAG6575399.1 (hypothetical protein SDJN03_26038, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 225 bits (574), Expect = 2.96e-74
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MLLWNREIAAVTIKKLDKAKSTLAQSCFDANILLATFWSPPLSPFFFLRFLGISLPLSFF 60
           MLLWNREIAAVTIKKLDKAKSTLAQSCFDANILLATFWSPPLSPFFFLRFLGISLPLSFF
Sbjct: 1   MLLWNREIAAVTIKKLDKAKSTLAQSCFDANILLATFWSPPLSPFFFLRFLGISLPLSFF 60

Query: 61  DFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLLSLISLDS 112
           DFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLLSLISLDS
Sbjct: 61  DFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLLSLISLDS 112

BLAST of Csor.00g084860 vs. NCBI nr
Match: KAG7013938.1 (Metal tolerance protein C4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220 bits (560), Expect = 8.72e-68
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0

Query: 1   MLLWNREIAAVTIKKLDKAKSTLAQSCFDANILLATFWSPPLSPFFFLRFLGISLPLSFF 60
           MLLWNREIAAVTIKKLDKAKSTLAQSCFDANILLATFWSPPLSPFFFLRFL  SLPLSFF
Sbjct: 1   MLLWNREIAAVTIKKLDKAKSTLAQSCFDANILLATFWSPPLSPFFFLRFLCTSLPLSFF 60

Query: 61  DFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLLSLISLDS 112
           DFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLLSLISLDS
Sbjct: 61  DFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLLSLISLDS 112

BLAST of Csor.00g084860 vs. NCBI nr
Match: XP_038898775.1 (metal tolerance protein C4 isoform X2 [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 5.25e-17
Identity = 46/67 (68.66%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 46  FFLRFLGISLPLSFFDFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLL 105
           F  RFL  S P S FD KTPQHH Q+QPE DG  IPLIG  F S+RL+  SSCSRRSVLL
Sbjct: 21  FSFRFLCTSSPPSLFDSKTPQHHQQQQPECDGHRIPLIGTHFQSRRLSSLSSCSRRSVLL 80

Query: 106 SLISLDS 112
            LISLDS
Sbjct: 81  GLISLDS 87

BLAST of Csor.00g084860 vs. NCBI nr
Match: XP_038898774.1 (metal tolerance protein C4 isoform X1 [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 5.72e-17
Identity = 46/67 (68.66%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 46  FFLRFLGISLPLSFFDFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLL 105
           F  RFL  S P S FD KTPQHH Q+QPE DG  IPLIG  F S+RL+  SSCSRRSVLL
Sbjct: 21  FSFRFLCTSSPPSLFDSKTPQHHQQQQPECDGHRIPLIGTHFQSRRLSSLSSCSRRSVLL 80

Query: 106 SLISLDS 112
            LISLDS
Sbjct: 81  GLISLDS 87

BLAST of Csor.00g084860 vs. NCBI nr
Match: XP_022151077.1 (metal tolerance protein C4 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 3.61e-10
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 49  RFLGISLPLSFFDFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLLSLI 108
           RFL  S P S  D   PQ H  +QPE D  G PL GA   S+RL+ A+SCSRRSVLL  I
Sbjct: 24  RFLCTSSPFSLLDPNIPQQHQPQQPECDSHGTPLFGAHCHSRRLSSAASCSRRSVLLGFI 83

Query: 109 SLDS 112
           S DS
Sbjct: 84  SFDS 87

BLAST of Csor.00g084860 vs. ExPASy TrEMBL
Match: A0A6J1DCJ1 (metal tolerance protein C4 OS=Momordica charantia OX=3673 GN=LOC111019096 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.75e-10
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 49  RFLGISLPLSFFDFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLLSLI 108
           RFL  S P S  D   PQ H  +QPE D  G PL GA   S+RL+ A+SCSRRSVLL  I
Sbjct: 24  RFLCTSSPFSLLDPNIPQQHQPQQPECDSHGTPLFGAHCHSRRLSSAASCSRRSVLLGFI 83

Query: 109 SLDS 112
           S DS
Sbjct: 84  SFDS 87

BLAST of Csor.00g084860 vs. ExPASy TrEMBL
Match: A0A1L5J031 (Metal tolerance protein 7 OS=Cucumis sativus OX=3659 GN=MTP7 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.43e-10
Identity = 41/71 (57.75%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 49  RFLGISLPLSFFDFKTPQHHLQRQ-------PERDGCGIPLIGARFPSQRLAPASSCSRR 108
           R L  S P S FD KTPQ   Q+Q       PE D   IPLIG  F S+RL+  SSCSRR
Sbjct: 74  RSLCTSSPPSLFDSKTPQQQQQQQQQQQQHQPECDSYRIPLIGTYFQSRRLSSPSSCSRR 133

Query: 109 SVLLSLISLDS 112
           SVLL LISLDS
Sbjct: 134 SVLLGLISLDS 144

BLAST of Csor.00g084860 vs. ExPASy TrEMBL
Match: A0A1S3CGZ0 (metal tolerance protein C4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500625 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.27e-10
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 49  RFLGISLPLSFFDFKTPQHHLQRQPER----DGCGIPLIGARFPSQRLAPASSCSRRSVL 108
           R L  S P S FD KTPQ   Q+Q ++    D   IPLIG  F S+RL+  SSCSRRSVL
Sbjct: 31  RSLCTSSPPSLFDSKTPQQQQQQQQQQQQECDSLRIPLIGTHFQSRRLSSPSSCSRRSVL 90

Query: 109 LSLISLDS 112
           L LISLDS
Sbjct: 91  LGLISLDS 98

BLAST of Csor.00g084860 vs. ExPASy TrEMBL
Match: A0A6J1KD60 (metal tolerance protein C4-like OS=Cucurbita maxima OX=3661 GN=LOC111494540 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.11e-09
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 46  FFLRFLGISLPLSFFDFKTPQHHLQRQPERDGCGIPLIGARFPSQRLAPASSCSRRSVLL 105
           F  R +  S P S FD  TPQHH Q+Q E D  G P IG  F  + L  A++CSRRSVLL
Sbjct: 21  FSFRSICNSSPFSSFDSSTPQHHQQQQQECDSHGTPQIGTHFLLRPLPSATTCSRRSVLL 80

Query: 106 SLISLDS 112
            L SLDS
Sbjct: 81  GLNSLDS 87

BLAST of Csor.00g084860 vs. ExPASy TrEMBL
Match: A0A6J1HJX8 (metal tolerance protein C4-like OS=Cucurbita moschata OX=3662 GN=LOC111464242 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.37e-08
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 46  FFLRFLGISLPLSFFDFKTPQHHLQRQPER---DGCGIPLIGARFPSQRLAPASSCSRRS 105
           F  R +  S P S FD  TPQHH Q+Q ++   DG G P IG  F  + L  A+SCSRRS
Sbjct: 21  FSFRSICNSSPFSSFDSGTPQHHQQQQQQQQECDGHGTPQIGTHFLLRPLPSATSCSRRS 80

Query: 106 VLLSLISLDS 112
           VLL L SLDS
Sbjct: 81  VLLGLNSLDS 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6575399.12.96e-74100.00hypothetical protein SDJN03_26038, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7013938.18.72e-6898.21Metal tolerance protein C4, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038898775.15.25e-1768.66metal tolerance protein C4 isoform X2 [Benincasa hispida][more]
XP_038898774.15.72e-1768.66metal tolerance protein C4 isoform X1 [Benincasa hispida][more]
XP_022151077.13.61e-1056.25metal tolerance protein C4 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1DCJ11.75e-1056.25metal tolerance protein C4 OS=Momordica charantia OX=3673 GN=LOC111019096 PE=4 S... [more]
A0A1L5J0312.43e-1057.75Metal tolerance protein 7 OS=Cucumis sativus OX=3659 GN=MTP7 PE=2 SV=1[more]
A0A1S3CGZ03.27e-1057.35metal tolerance protein C4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500625 PE... [more]
A0A6J1KD602.11e-0953.73metal tolerance protein C4-like OS=Cucurbita maxima OX=3661 GN=LOC111494540 PE=4... [more]
A0A6J1HJX81.37e-0852.86metal tolerance protein C4-like OS=Cucurbita moschata OX=3662 GN=LOC111464242 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 110..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g084860.m01Csor.00g084860.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport