Csor.00g075180 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g075180
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr01: 11916644 .. 11916985 (-)
RNA-Seq ExpressionCsor.00g075180
SyntenyCsor.00g075180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTGGCAAACTTCGAGGAGCGGGCGAATCCAGGCGTCGATACCCAGAGCCGACACGGATTCTGGTACCAATGTTCTTGGGGAAAACTGGCCATCCAAAGTGGTTCATCCCTCTACTAGGCAACAGATCTCCAAGGAGTTGAACATCTGCAAAAAAAAAAAAAAAAAAGAGGAGGAAATGGCCATATACCCTGGAATAAAAGAACCAGAATTGTATCTGGACTGGGATGATCGATCCTTGGTGATTGATTATACCCCAAAACTTAATGAACAGGCCGCCCCTGATCGGAGCAGCTGGCTAGAGTTATGGACATTCCCGGTCGGTCAAGTTACGGTCTGA

mRNA sequence

ATGACGTGGCAAACTTCGAGGAGCGGGCGAATCCAGGCGTCGATACCCAGAGCCGACACGGATTCTGGTACCAATGTTCTTGGGGAAAACTGGCCATCCAAAGTGGTTCATCCCTCTACTAGGCAACAGATCTCCAAGGAGTTGAACATCTGCAAAAAAAAAAAAAAAAAAGAGGAGGAAATGGCCATATACCCTGGAATAAAAGAACCAGAATTGTATCTGGACTGGGATGATCGATCCTTGGTGATTGATTATACCCCAAAACTTAATGAACAGGCCGCCCCTGATCGGAGCAGCTGGCTAGAGTTATGGACATTCCCGGTCGGTCAAGTTACGGTCTGA

Coding sequence (CDS)

ATGACGTGGCAAACTTCGAGGAGCGGGCGAATCCAGGCGTCGATACCCAGAGCCGACACGGATTCTGGTACCAATGTTCTTGGGGAAAACTGGCCATCCAAAGTGGTTCATCCCTCTACTAGGCAACAGATCTCCAAGGAGTTGAACATCTGCAAAAAAAAAAAAAAAAAAGAGGAGGAAATGGCCATATACCCTGGAATAAAAGAACCAGAATTGTATCTGGACTGGGATGATCGATCCTTGGTGATTGATTATACCCCAAAACTTAATGAACAGGCCGCCCCTGATCGGAGCAGCTGGCTAGAGTTATGGACATTCCCGGTCGGTCAAGTTACGGTCTGA

Protein sequence

MTWQTSRSGRIQASIPRADTDSGTNVLGENWPSKVVHPSTRQQISKELNICKKKKKKEEEMAIYPGIKEPELYLDWDDRSLVIDYTPKLNEQAAPDRSSWLELWTFPVGQVTV
Homology
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BLAST of Csor.00g075180 vs. NCBI nr
Match: KAG6608155.1 (hypothetical protein SDJN03_01497, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235 bits (599), Expect = 4.88e-78
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MTWQTSRSGRIQASIPRADTDSGTNVLGENWPSKVVHPSTRQQISKELNICKKKKKKEEE 60
           MTWQTSRSGRIQASIPRADTDSGTNVLGENWPSKVVHPSTRQQISKELNICKKKKKKEEE
Sbjct: 1   MTWQTSRSGRIQASIPRADTDSGTNVLGENWPSKVVHPSTRQQISKELNICKKKKKKEEE 60

Query: 61  MAIYPGIKEPELYLDWDDRSLVIDYTPKLNEQAAPDRSSWLELWTFPVGQVTV 113
           MAIYPGIKEPELYLDWDDRSLVIDYTPKLNEQAAPDRSSWLELWTFPVGQVTV
Sbjct: 61  MAIYPGIKEPELYLDWDDRSLVIDYTPKLNEQAAPDRSSWLELWTFPVGQVTV 113

The following BLAST results are available for this feature:
BLAST of Csor.00g075180 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g075180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608155.14.88e-78100.00hypothetical protein SDJN03_01497, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g075180 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g075180 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 41..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g075180.m01Csor.00g075180.m01mRNA