Csor.00g075180.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g075180.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr01: 11916644 .. 11916985 (-)
Sequence length	342
RNA-Seq Expression	Csor.00g075180.m01
Synteny	Csor.00g075180.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTGGCAAACTTCGAGGAGCGGGCGAATCCAGGCGTCGATACCCAGAGCCGACACGGATTCTGGTACCAATGTTCTTGGGGAAAACTGGCCATCCAAAGTGGTTCATCCCTCTACTAGGCAACAGATCTCCAAGGAGTTGAACATCTGCAAAAAAAAAAAAAAAAAAGAGGAGGAAATGGCCATATACCCTGGAATAAAAGAACCAGAATTGTATCTGGACTGGGATGATCGATCCTTGGTGATTGATTATACCCCAAAACTTAATGAACAGGCCGCCCCTGATCGGAGCAGCTGGCTAGAGTTATGGACATTCCCGGTCGGTCAAGTTACGGTCTGA

mRNA sequence

ATGACGTGGCAAACTTCGAGGAGCGGGCGAATCCAGGCGTCGATACCCAGAGCCGACACGGATTCTGGTACCAATGTTCTTGGGGAAAACTGGCCATCCAAAGTGGTTCATCCCTCTACTAGGCAACAGATCTCCAAGGAGTTGAACATCTGCAAAAAAAAAAAAAAAAAAGAGGAGGAAATGGCCATATACCCTGGAATAAAAGAACCAGAATTGTATCTGGACTGGGATGATCGATCCTTGGTGATTGATTATACCCCAAAACTTAATGAACAGGCCGCCCCTGATCGGAGCAGCTGGCTAGAGTTATGGACATTCCCGGTCGGTCAAGTTACGGTCTGA

Coding sequence (CDS)

ATGACGTGGCAAACTTCGAGGAGCGGGCGAATCCAGGCGTCGATACCCAGAGCCGACACGGATTCTGGTACCAATGTTCTTGGGGAAAACTGGCCATCCAAAGTGGTTCATCCCTCTACTAGGCAACAGATCTCCAAGGAGTTGAACATCTGCAAAAAAAAAAAAAAAAAAGAGGAGGAAATGGCCATATACCCTGGAATAAAAGAACCAGAATTGTATCTGGACTGGGATGATCGATCCTTGGTGATTGATTATACCCCAAAACTTAATGAACAGGCCGCCCCTGATCGGAGCAGCTGGCTAGAGTTATGGACATTCCCGGTCGGTCAAGTTACGGTCTGA

Protein sequence

MTWQTSRSGRIQASIPRADTDSGTNVLGENWPSKVVHPSTRQQISKELNICKKKKKKEEEMAIYPGIKEPELYLDWDDRSLVIDYTPKLNEQAAPDRSSWLELWTFPVGQVTV

Homology

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BLAST of Csor.00g075180.m01 vs. NCBI nr
Match: KAG6608155.1 (hypothetical protein SDJN03_01497, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235 bits (599), Expect = 4.88e-78
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MTWQTSRSGRIQASIPRADTDSGTNVLGENWPSKVVHPSTRQQISKELNICKKKKKKEEE 60
           MTWQTSRSGRIQASIPRADTDSGTNVLGENWPSKVVHPSTRQQISKELNICKKKKKKEEE
Sbjct: 1   MTWQTSRSGRIQASIPRADTDSGTNVLGENWPSKVVHPSTRQQISKELNICKKKKKKEEE 60

Query: 61  MAIYPGIKEPELYLDWDDRSLVIDYTPKLNEQAAPDRSSWLELWTFPVGQVTV 113
           MAIYPGIKEPELYLDWDDRSLVIDYTPKLNEQAAPDRSSWLELWTFPVGQVTV
Sbjct: 61  MAIYPGIKEPELYLDWDDRSLVIDYTPKLNEQAAPDRSSWLELWTFPVGQVTV 113

The following BLAST results are available for this feature:

BLAST of Csor.00g075180.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g075180.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608155.1	4.88e-78	100.00	hypothetical protein SDJN03_01497, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g075180.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g075180.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g075180	Csor.00g075180	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g075180.m01.CDS01	Csor.00g075180.m01.CDS01	CDS

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g075180.m01.single01	Csor.00g075180.m01.single01	single

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g075180.m01.stop_codon01	Csor.00g075180.m01.stop_codon01	stop_codon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g075180.m01.start_codon01	Csor.00g075180.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g075180.m01	Csor.00g075180.m01-protein	polypeptide