CsaV3_7G022970 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G022970
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Defensin-like protein 3
Location	chr7: 11889641 .. 11890719 (+)
RNA-Seq Expression	CsaV3_7G022970
Synteny	CsaV3_7G022970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAATGATGCGTTTCACAGAATATAATAATGGGGAGGAACCGAAATCCAAGTATTCAAGTGTAGTGAAAGTGGAGCTAAAGGAATGGGGGGAGAAGGATTAAGAAAGCTCACAGTTGTGGTGCTCATCTTCCTAGCCTTTGCTTCTGGTAATTTGATCCTCCTGCTTGTTCATGGTTTATGCCTTAGGACTCTGAAGAGCGAAATTAGATCTATATGTATTACTAATCAAAGAATTAACCTGCATTGCATGTATTTGTTTATTTTATGAAACGTTGAGCAAAACTTTTTTTCCTTTGATTTATTTTACTGCTAGAAATGGATTATAATCTTTTTTAAGTAGATACATAGTTTGATACTCGGATTGGAATTTGCAACATCTACAAAAGATTTTGGTTGAAGTTGTAGTAAAACTTTTTGGTTGATAACGTAAAAAGAAGATTGTTGATTGTATGAATGAATGTGTGTTATTGTTACTGTGAATAAAGTCCAAACAATGAGAATTGATATTGAATGTAAAGAGCTATAAGGCAACCAAATGTTTCGAGTTTACTTGAATCCTTTTCTCTCAAGATCTCTTTGGAGCCATAATTCACTCACCAAGTGTTTCTTCTTTTCCATTAATCCCTCTGTGTTTAAAACCAAAATAGCATAGAAAATGCTCTAACTAACGACTAATATATCTCTAATGACATTCTTATCATACTGTTACAGGCTGGATGGTGGTGCAGACAGAGGGGCTGACTTGTTATAGACCGAGCACGGTGTTTCAGGGAACATGCAATACAGCTCAGGAATGTGCTATAGTTTGTTTTTATCAAGAGGGGTGGGATGATGGGTTTTGCTCGGCTGATAAATGCGTCTGTACAAAGCAATGCTGCTGCTAAGTTCAGGCATCAATGGGTTTGGATATTACCACTGTTCTTGCTTTCTTACTCCCTCATGAATAAAATAACCTCCTGCCATTCTAATCAAACACACAAGTCTACTCCTTAAGGTTTTGGCTCCATCCTCCATCTTCCAAGTTTAGGACACCACATTTTCTATAAATCTAGAACACAAAACGACAAAGACACGTTT

mRNA sequence

ATGGGGGGAGAAGGATTAAGAAAGCTCACAGTTGTGGTGCTCATCTTCCTAGCCTTTGCTTCTGGCTGGATGGTGGTGCAGACAGAGGGGCTGACTTGTTATAGACCGAGCACGGTGTTTCAGGGAACATGCAATACAGCTCAGGAATGTGCTATAGTTTGTTTTTATCAAGAGGGGTGGGATGATGGGTTTTGCTCGGCTGATAAATGCGTCTGTACAAAGCAATGCTGCTGCTAA

Coding sequence (CDS)

ATGGGGGGAGAAGGATTAAGAAAGCTCACAGTTGTGGTGCTCATCTTCCTAGCCTTTGCTTCTGGCTGGATGGTGGTGCAGACAGAGGGGCTGACTTGTTATAGACCGAGCACGGTGTTTCAGGGAACATGCAATACAGCTCAGGAATGTGCTATAGTTTGTTTTTATCAAGAGGGGTGGGATGATGGGTTTTGCTCGGCTGATAAATGCGTCTGTACAAAGCAATGCTGCTGCTAA

Protein sequence

MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGWDDGFCSADKCVCTKQCCC*

Homology

[Close]

BLAST of CsaV3_7G022970 vs. NCBI nr
Match: KAE8646110.1 (hypothetical protein Csa_016182 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 2.4e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60
          MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW
Sbjct: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60

Query: 61 DDGFCSADKCVCTKQCCC 79
          DDGFCSADKCVCTKQCCC
Sbjct: 61 DDGFCSADKCVCTKQCCC 78

[Close]

BLAST of CsaV3_7G022970 vs. NCBI nr
Match: KAA0062792.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96761.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 1.8e-34
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60
          MGGEGLRKLTVVVLIFL FASGWMVVQTEGLTCY+PST FQGTCN+A+EC  VCFYQEGW
Sbjct: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60

Query: 61 DDGFCSADKCVCTKQCCC 79
          DDGFCS DKC+CT++CCC
Sbjct: 61 DDGFCSGDKCICTEKCCC 78

[Close]

BLAST of CsaV3_7G022970 vs. NCBI nr
Match: XP_022931766.1 (defensin Tk-AMP-D4-like [Cucurbita moschata])

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 49/76 (64.47%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60
          M G+ LR L VVV IFLA ASGWMVVQTEG TCY+ +  F G+C +   CA  C   EGW
Sbjct: 1  MAGQSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGSCTSTAACADFCITFEGW 60

Query: 61 DDGFCSADKCVCTKQC 77
          DDGFCS DKC CTKQC
Sbjct: 61 DDGFCSGDKCTCTKQC 76

[Close]

BLAST of CsaV3_7G022970 vs. NCBI nr
Match: KAG6590329.1 (Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 49/76 (64.47%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60
          M G+ LR L VVV IFLA ASGWMVVQTEG TCY+ +  F G+C +   CA  C   EGW
Sbjct: 1  MAGQSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGSCTSTAACADFCITFEGW 60

Query: 61 DDGFCSADKCVCTKQC 77
          DDGFCS DKC CTKQC
Sbjct: 61 DDGFCSGDKCTCTKQC 76

[Close]

BLAST of CsaV3_7G022970 vs. NCBI nr
Match: XP_023520732.1 (defensin-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-20
Identity = 49/76 (64.47%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60
          M G+ LR L VVV IFLA ASGWMVVQTEG TCY+ +  F G C +   CA  C   EGW
Sbjct: 1  MTGQSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGPCTSTAACADFCISFEGW 60

Query: 61 DDGFCSADKCVCTKQC 77
          DDGFCS DKC CTKQC
Sbjct: 61 DDGFCSGDKCTCTKQC 76

[Close]

BLAST of CsaV3_7G022970 vs. ExPASy Swiss-Prot
Match: Q9C947 (Defensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDF2.4 PE=3 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 5.2e-05
Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 10 TVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGWDDGFCSA-- 69
          + ++L+F+  A+   +V  E  TC   S +F G C ++  CA VC + EG+ DG C    
Sbjct: 9  SALLLLFMILATVMGLVTVEARTCETSSNLFNGPCLSSSNCANVC-HNEGFSDGDCRGFR 68

Query: 70 DKCVCTKQC 77
           +C+CT+ C
Sbjct: 69 RRCLCTRPC 76

[Close]

BLAST of CsaV3_7G022970 vs. ExPASy TrEMBL
Match: A0A5A7V3H5 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00550 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.6e-35
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60
          MGGEGLRKLTVVVLIFL FASGWMVVQTEGLTCY+PST FQGTCN+A+EC  VCFYQEGW
Sbjct: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60

Query: 61 DDGFCSADKCVCTKQCCC 79
          DDGFCS DKC+CT++CCC
Sbjct: 61 DDGFCSGDKCICTEKCCC 78

[Close]

BLAST of CsaV3_7G022970 vs. ExPASy TrEMBL
Match: A0A6J1EUK4 (defensin Tk-AMP-D4-like OS=Cucurbita moschata OX=3662 GN=LOC111438039 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.0e-21
Identity = 49/76 (64.47%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60
          M G+ LR L VVV IFLA ASGWMVVQTEG TCY+ +  F G+C +   CA  C   EGW
Sbjct: 1  MAGQSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGSCTSTAACADFCITFEGW 60

Query: 61 DDGFCSADKCVCTKQC 77
          DDGFCS DKC CTKQC
Sbjct: 61 DDGFCSGDKCTCTKQC 76

[Close]

BLAST of CsaV3_7G022970 vs. ExPASy TrEMBL
Match: A0A6J1IBG0 (defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473130 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 48/76 (63.16%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60
          M G+ LR L +VV IFLA  SGWMVVQTEG TCY+ S  F G C  A  CA +C   E W
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVVQTEGRTCYKHSDAFIGPC-IAATCAELCISFEKW 60

Query: 61 DDGFCSADKCVCTKQC 77
          DDGFCS DKC CTKQC
Sbjct: 61 DDGFCSGDKCTCTKQC 75

[Close]

BLAST of CsaV3_7G022970 vs. ExPASy TrEMBL
Match: A0A6J1IH26 (defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473392 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 48/76 (63.16%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60
          M G+ LR L +VV IFLA  SGWMVVQTEG TCY+ S  F G C  A  CA +C   E W
Sbjct: 1  MAGQSLRSLKIVVFIFLALTSGWMVVQTEGRTCYKHSDAFIGPC-IAATCAELCISFEKW 60

Query: 61 DDGFCSADKCVCTKQC 77
          DDGFCS DKC CTKQC
Sbjct: 61 DDGFCSGDKCTCTKQC 75

[Close]

BLAST of CsaV3_7G022970 vs. ExPASy TrEMBL
Match: A0A6J1IEV4 (defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111475548 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 48/76 (63.16%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60
          M G+ LR L +VV IFLA  SGWMVVQTEG TCY+ S  F G C  A  CA +C   E W
Sbjct: 1  MAGQSLRNLKIVVFIFLAVTSGWMVVQTEGRTCYKHSDAFIGPC-IAATCAELCISFEKW 60

Query: 61 DDGFCSADKCVCTKQC 77
          DDGFCS DKC CTKQC
Sbjct: 61 DDGFCSGDKCTCTKQC 75

[Close]

BLAST of CsaV3_7G022970 vs. TAIR 10
Match: AT1G61070.1 (low-molecular-weight cysteine-rich 66 )

HSP 1 Score: 48.1 bits (113), Expect = 3.7e-06
Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 10 TVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGWDDGFCSA-- 69
          + ++L+F+  A+   +V  E  TC   S +F G C ++  CA VC + EG+ DG C    
Sbjct: 9  SALLLLFMILATVMGLVTVEARTCETSSNLFNGPCLSSSNCANVC-HNEGFSDGDCRGFR 68

Query: 70 DKCVCTKQC 77
           +C+CT+ C
Sbjct: 69 RRCLCTRPC 76

The following BLAST results are available for this feature:

BLAST of CsaV3_7G022970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646110.1	2.4e-39	100.00	hypothetical protein Csa_016182 [Cucumis sativus]	[more]
KAA0062792.1	1.8e-34	85.90	defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96761.1 defensin-like pro...	[more]
XP_022931766.1	1.5e-20	64.47	defensin Tk-AMP-D4-like [Cucurbita moschata]	[more]
KAG6590329.1	1.5e-20	64.47	Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023520732.1	4.2e-20	64.47	defensin-like protein 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_7G022970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C947	5.2e-05	34.78	Defensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDF2.4 PE=3 SV=2	[more]

BLAST of CsaV3_7G022970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3H5	8.6e-35	85.90	Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EUK4	7.0e-21	64.47	defensin Tk-AMP-D4-like OS=Cucurbita moschata OX=3662 GN=LOC111438039 PE=4 SV=1	[more]
A0A6J1IBG0	1.5e-18	63.16	defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473130 PE=4 SV=1	[more]
A0A6J1IH26	1.5e-18	63.16	defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473392 PE=4 SV=1	[more]
A0A6J1IEV4	1.9e-18	63.16	defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111475548 PE=4 SV=1	[more]

BLAST of CsaV3_7G022970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61070.1	3.7e-06	34.78	low-molecular-weight cysteine-rich 66	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003614	Knottin, scorpion toxin-like	SMART	SM00505	gth_4	coord: 32..76 e-value: 0.0013 score: 28.0
None	No IPR available	PFAM	PF00304	Gamma-thionin	coord: 32..76 e-value: 2.6E-8 score: 34.0
IPR036574	Knottin, scorpion toxin-like superfamily	GENE3D	3.30.30.10		coord: 31..76 e-value: 8.1E-9 score: 37.6
IPR036574	Knottin, scorpion toxin-like superfamily	SUPERFAMILY	57095	Scorpion toxin-like	coord: 32..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G022970.1	CsaV3_7G022970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response