Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAATTGGGTTGTTGACAACCACCAAGAATGGAAGGAACTTGCAGCGAAGGTCTTCAACAATGAGCAAGTATGTTCTTTATACTAGTATATTTTATATTTACAATGAATGTTATATATATAGGTATGCTTATTCTGTATTGTTTTCAATATGTCATACATGCAACAATTTGAATTCAATCCTATGTTTCCTGAAGAAGATTTCGTGGAACAAACAGTGTTTGAAGAAAATAAAACAACAGAGGAAACAGAAAATGTTTTTGAAAAAGGAAAATGCTCGAGACAAGCTGAGCGTTCGACTGTTGAAGACTTGCTGAGCATAATTATGGCTAGTAATAAAGCACTGAACAATAAGATGAACATACTGATTGTTAAGGTTGAAGAGATAACAAAATTGTTCAAAGATAAAAACAGTCAAACAGTGTAA
mRNA sequence
ATGCTTAATTGGGTTGTTGACAACCACCAAGAATGGAAGGAACTTGCAGCGAAGGTCTTCAACAATGAGCAAGTATGCTTATTCTGTATTGTTTTCAATATGTCATACATGCAACAATTTGAATTCAATCCTATGTTTCCTGAAGAAGATTTCGTGGAACAAACAGTGTTTGAAGAAAATAAAACAACAGAGGAAACAGAAAATGTTTTTGAAAAAGGAAAATGCTCGAGACAAGCTGAGCGTTCGACTGTTGAAGACTTGCTGAGCATAATTATGGCTAGTAATAAAGCACTGAACAATAAGATGAACATACTGATTGTTAAGGTTGAAGAGATAACAAAATTGTTCAAAGATAAAAACAGTCAAACAGTGTAA
Coding sequence (CDS)
ATGCTTAATTGGGTTGTTGACAACCACCAAGAATGGAAGGAACTTGCAGCGAAGGTCTTCAACAATGAGCAAGTATGCTTATTCTGTATTGTTTTCAATATGTCATACATGCAACAATTTGAATTCAATCCTATGTTTCCTGAAGAAGATTTCGTGGAACAAACAGTGTTTGAAGAAAATAAAACAACAGAGGAAACAGAAAATGTTTTTGAAAAAGGAAAATGCTCGAGACAAGCTGAGCGTTCGACTGTTGAAGACTTGCTGAGCATAATTATGGCTAGTAATAAAGCACTGAACAATAAGATGAACATACTGATTGTTAAGGTTGAAGAGATAACAAAATTGTTCAAAGATAAAAACAGTCAAACAGTGTAA
Protein sequence
MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEENKTTEETENVFEKGKCSRQAERSTVEDLLSIIMASNKALNNKMNILIVKVEEITKLFKDKNSQTV*
Homology
BLAST of CsaV3_7G018440 vs. NCBI nr
Match:
KAE8645973.1 (hypothetical protein Csa_015468 [Cucumis sativus])
HSP 1 Score: 245.0 bits (624), Expect = 3.5e-61
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN
Sbjct: 1 MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
Query: 61 KTTEETENVFEKGKCSRQAERSTVEDLLSIIMASNKALNNKMNILIVKVEEITKLFKDKN 120
KTTEETENVFEKGKCSRQAERSTVEDLLSIIMASNKALNNKMNILIVKVEEITKLFKDKN
Sbjct: 61 KTTEETENVFEKGKCSRQAERSTVEDLLSIIMASNKALNNKMNILIVKVEEITKLFKDKN 120
Query: 121 SQTV 125
SQTV
Sbjct: 121 SQTV 124
BLAST of CsaV3_7G018440 vs. NCBI nr
Match:
KAA0062049.1 (uncharacterized protein E6C27_scaffold89G003890 [Cucumis melo var. makuwa])
HSP 1 Score: 107.5 bits (267), Expect = 8.7e-20
Identity = 64/126 (50.79%), Postives = 81/126 (64.29%), Query Frame = 0
Query: 5 VVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEENKTTE 64
VVD+H EWK+LA +VF+NE QFEF MF EEDF+EQ+ F E K T+
Sbjct: 6 VVDSHLEWKDLAERVFDNE---------------QFEFKVMFLEEDFIEQSTFHERKPTK 65
Query: 65 ETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITKLFKD 124
ET EKG+CSRQAE + VE +IMASN+ALN KM+ ++V+VE + KL K+
Sbjct: 66 ETRKRLEKGECSRQAEHTDVEVPKYFFRFQELIMASNEALNLKMDKMLVEVEGLKKLLKE 116
BLAST of CsaV3_7G018440 vs. NCBI nr
Match:
TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 94.7 bits (234), Expect = 5.9e-16
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 0
Query: 1 MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
MLNWVVDNH EWK+LA KVF+N+ QF+F MF EEDFVE+ +F EN
Sbjct: 177 MLNWVVDNHPEWKDLAEKVFDND---------------QFKFEVMF-EEDFVERMMFHEN 236
Query: 61 KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
EET FE+G+ S Q E S + +I+A+N+ LNNK+++LI +VE +
Sbjct: 237 VMREETNGTFERGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESLKD 290
Query: 121 LFKDKNSQTV 125
+ K K +QTV
Sbjct: 297 MLKKKVNQTV 290
BLAST of CsaV3_7G018440 vs. NCBI nr
Match:
KAA0051301.1 (uncharacterized protein E6C27_scaffold55G00080 [Cucumis melo var. makuwa])
HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0
Query: 1 MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
MLNWVVDNH EWK+LA KVF+N+ QF+F MF EEDFVE+ +F EN
Sbjct: 192 MLNWVVDNHPEWKDLAEKVFDND---------------QFKFEVMF-EEDFVERMMFHEN 251
Query: 61 KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
EET F++G+ S Q E S + +I+A+N+ LNNK+++LI +VE
Sbjct: 252 VMREETNGTFDRGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESFKD 305
Query: 121 LFKDKNSQTV 125
+ K+K +QTV
Sbjct: 312 MLKEKVNQTV 305
BLAST of CsaV3_7G018440 vs. NCBI nr
Match:
KAA0047364.1 (transposase [Cucumis melo var. makuwa] >TYK14041.1 transposase [Cucumis melo var. makuwa])
HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 52/130 (40.00%), Postives = 83/130 (63.85%), Query Frame = 0
Query: 1 MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
+LNWVVD+H +WK +VF++E QF++ MFP+++FVE+++F E
Sbjct: 280 LLNWVVDSHPKWKP-CRRVFDHE---------------QFQYKAMFPDDNFVERSMFHER 339
Query: 61 KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
++T+ET F+KG+CSRQA+ + VE +IMA+N+ALN K++ L++K+E +
Sbjct: 340 QSTKETHKRFKKGECSRQAKHTNVEVPKYFLKFQELIMANNQALNVKLDKLLLKIEGLKN 393
Query: 121 LFKDKNSQTV 125
L K+K S TV
Sbjct: 400 LLKEKESATV 393
BLAST of CsaV3_7G018440 vs. ExPASy TrEMBL
Match:
A0A5A7V8N4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003890 PE=4 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 4.2e-20
Identity = 64/126 (50.79%), Postives = 81/126 (64.29%), Query Frame = 0
Query: 5 VVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEENKTTE 64
VVD+H EWK+LA +VF+NE QFEF MF EEDF+EQ+ F E K T+
Sbjct: 6 VVDSHLEWKDLAERVFDNE---------------QFEFKVMFLEEDFIEQSTFHERKPTK 65
Query: 65 ETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITKLFKD 124
ET EKG+CSRQAE + VE +IMASN+ALN KM+ ++V+VE + KL K+
Sbjct: 66 ETRKRLEKGECSRQAEHTDVEVPKYFFRFQELIMASNEALNLKMDKMLVEVEGLKKLLKE 116
BLAST of CsaV3_7G018440 vs. ExPASy TrEMBL
Match:
A0A0A0K3B0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G212120 PE=4 SV=1)
HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 0
Query: 34 MSYMQQFEFNPMFPEEDFVEQTVFEENKTTEETENVFEKGKCSRQAERSTVEDLLSIIMA 93
MS++QQFEF MF EEDFVEQ F E KTT+ETE FEKG+CSRQ E + +EDLLSIIMA
Sbjct: 1 MSFLQQFEFKAMFLEEDFVEQNTFHERKTTKETEKRFEKGECSRQVEHTNIEDLLSIIMA 60
Query: 94 SNKALNNKMNILIVKVEEI 113
SN+ALN KM L+V+ E I
Sbjct: 61 SNEALNWKMEKLLVEAEGI 79
BLAST of CsaV3_7G018440 vs. ExPASy TrEMBL
Match:
A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)
HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 0
Query: 1 MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
MLNWVVDNH EWK+LA KVF+N+ QF+F MF EEDFVE+ +F EN
Sbjct: 177 MLNWVVDNHPEWKDLAEKVFDND---------------QFKFEVMF-EEDFVERMMFHEN 236
Query: 61 KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
EET FE+G+ S Q E S + +I+A+N+ LNNK+++LI +VE +
Sbjct: 237 VMREETNGTFERGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESLKD 290
Query: 121 LFKDKNSQTV 125
+ K K +QTV
Sbjct: 297 MLKKKVNQTV 290
BLAST of CsaV3_7G018440 vs. ExPASy TrEMBL
Match:
A0A5A7UCM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00080 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 4.8e-16
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0
Query: 1 MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
MLNWVVDNH EWK+LA KVF+N+ QF+F MF EEDFVE+ +F EN
Sbjct: 192 MLNWVVDNHPEWKDLAEKVFDND---------------QFKFEVMF-EEDFVERMMFHEN 251
Query: 61 KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
EET F++G+ S Q E S + +I+A+N+ LNNK+++LI +VE
Sbjct: 252 VMREETNGTFDRGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESFKD 305
Query: 121 LFKDKNSQTV 125
+ K+K +QTV
Sbjct: 312 MLKEKVNQTV 305
BLAST of CsaV3_7G018440 vs. ExPASy TrEMBL
Match:
A0A5A7TWM9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00090 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 52/130 (40.00%), Postives = 83/130 (63.85%), Query Frame = 0
Query: 1 MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
+LNWVVD+H +WK +VF++E QF++ MFP+++FVE+++F E
Sbjct: 280 LLNWVVDSHPKWKP-CRRVFDHE---------------QFQYKAMFPDDNFVERSMFHER 339
Query: 61 KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
++T+ET F+KG+CSRQA+ + VE +IMA+N+ALN K++ L++K+E +
Sbjct: 340 QSTKETHKRFKKGECSRQAKHTNVEVPKYFLKFQELIMANNQALNVKLDKLLLKIEGLKN 393
Query: 121 LFKDKNSQTV 125
L K+K S TV
Sbjct: 400 LLKEKESATV 393
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8645973.1 | 3.5e-61 | 100.00 | hypothetical protein Csa_015468 [Cucumis sativus] | [more] |
KAA0062049.1 | 8.7e-20 | 50.79 | uncharacterized protein E6C27_scaffold89G003890 [Cucumis melo var. makuwa] | [more] |
TYK30586.1 | 5.9e-16 | 44.62 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
KAA0051301.1 | 1.0e-15 | 43.85 | uncharacterized protein E6C27_scaffold55G00080 [Cucumis melo var. makuwa] | [more] |
KAA0047364.1 | 2.9e-15 | 40.00 | transposase [Cucumis melo var. makuwa] >TYK14041.1 transposase [Cucumis melo var... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V8N4 | 4.2e-20 | 50.79 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A0A0K3B0 | 2.6e-17 | 67.09 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G212120 PE=4 SV=1 | [more] |
A0A5D3E3X1 | 2.8e-16 | 44.62 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... | [more] |
A0A5A7UCM5 | 4.8e-16 | 43.85 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TWM9 | 1.4e-15 | 40.00 | Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00090 PE... | [more] |
Match Name | E-value | Identity | Description | |