CsaV3_7G018440.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G018440.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DUF1985 domain-containing protein
Location	chr7: 8373020 .. 8373448 (+)
Sequence length	375
RNA-Seq Expression	CsaV3_7G018440.1
Synteny	CsaV3_7G018440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAATTGGGTTGTTGACAACCACCAAGAATGGAAGGAACTTGCAGCGAAGGTCTTCAACAATGAGCAAGTATGTTCTTTATACTAGTATATTTTATATTTACAATGAATGTTATATATATAGGTATGCTTATTCTGTATTGTTTTCAATATGTCATACATGCAACAATTTGAATTCAATCCTATGTTTCCTGAAGAAGATTTCGTGGAACAAACAGTGTTTGAAGAAAATAAAACAACAGAGGAAACAGAAAATGTTTTTGAAAAAGGAAAATGCTCGAGACAAGCTGAGCGTTCGACTGTTGAAGACTTGCTGAGCATAATTATGGCTAGTAATAAAGCACTGAACAATAAGATGAACATACTGATTGTTAAGGTTGAAGAGATAACAAAATTGTTCAAAGATAAAAACAGTCAAACAGTGTAA

mRNA sequence

ATGCTTAATTGGGTTGTTGACAACCACCAAGAATGGAAGGAACTTGCAGCGAAGGTCTTCAACAATGAGCAAGTATGCTTATTCTGTATTGTTTTCAATATGTCATACATGCAACAATTTGAATTCAATCCTATGTTTCCTGAAGAAGATTTCGTGGAACAAACAGTGTTTGAAGAAAATAAAACAACAGAGGAAACAGAAAATGTTTTTGAAAAAGGAAAATGCTCGAGACAAGCTGAGCGTTCGACTGTTGAAGACTTGCTGAGCATAATTATGGCTAGTAATAAAGCACTGAACAATAAGATGAACATACTGATTGTTAAGGTTGAAGAGATAACAAAATTGTTCAAAGATAAAAACAGTCAAACAGTGTAA

Coding sequence (CDS)

ATGCTTAATTGGGTTGTTGACAACCACCAAGAATGGAAGGAACTTGCAGCGAAGGTCTTCAACAATGAGCAAGTATGCTTATTCTGTATTGTTTTCAATATGTCATACATGCAACAATTTGAATTCAATCCTATGTTTCCTGAAGAAGATTTCGTGGAACAAACAGTGTTTGAAGAAAATAAAACAACAGAGGAAACAGAAAATGTTTTTGAAAAAGGAAAATGCTCGAGACAAGCTGAGCGTTCGACTGTTGAAGACTTGCTGAGCATAATTATGGCTAGTAATAAAGCACTGAACAATAAGATGAACATACTGATTGTTAAGGTTGAAGAGATAACAAAATTGTTCAAAGATAAAAACAGTCAAACAGTGTAA

Protein sequence

MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEENKTTEETENVFEKGKCSRQAERSTVEDLLSIIMASNKALNNKMNILIVKVEEITKLFKDKNSQTV*

Homology

[Close]

BLAST of CsaV3_7G018440.1 vs. NCBI nr
Match: KAE8645973.1 (hypothetical protein Csa_015468 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 3.5e-61
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
           MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN
Sbjct: 1   MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60

Query: 61  KTTEETENVFEKGKCSRQAERSTVEDLLSIIMASNKALNNKMNILIVKVEEITKLFKDKN 120
           KTTEETENVFEKGKCSRQAERSTVEDLLSIIMASNKALNNKMNILIVKVEEITKLFKDKN
Sbjct: 61  KTTEETENVFEKGKCSRQAERSTVEDLLSIIMASNKALNNKMNILIVKVEEITKLFKDKN 120

Query: 121 SQTV 125
           SQTV
Sbjct: 121 SQTV 124

[Close]

BLAST of CsaV3_7G018440.1 vs. NCBI nr
Match: KAA0062049.1 (uncharacterized protein E6C27_scaffold89G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-20
Identity = 64/126 (50.79%), Postives = 81/126 (64.29%), Query Frame = 0


Query: 5   VVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEENKTTE 64
           VVD+H EWK+LA +VF+NE               QFEF  MF EEDF+EQ+ F E K T+
Sbjct: 6   VVDSHLEWKDLAERVFDNE---------------QFEFKVMFLEEDFIEQSTFHERKPTK 65

Query: 65  ETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITKLFKD 124
           ET    EKG+CSRQAE + VE          +IMASN+ALN KM+ ++V+VE + KL K+
Sbjct: 66  ETRKRLEKGECSRQAEHTDVEVPKYFFRFQELIMASNEALNLKMDKMLVEVEGLKKLLKE 116

[Close]

BLAST of CsaV3_7G018440.1 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-16
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 1   MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
           MLNWVVDNH EWK+LA KVF+N+               QF+F  MF EEDFVE+ +F EN
Sbjct: 177 MLNWVVDNHPEWKDLAEKVFDND---------------QFKFEVMF-EEDFVERMMFHEN 236

Query: 61  KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
              EET   FE+G+ S Q E S  +          +I+A+N+ LNNK+++LI +VE +  
Sbjct: 237 VMREETNGTFERGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESLKD 290

Query: 121 LFKDKNSQTV 125
           + K K +QTV
Sbjct: 297 MLKKKVNQTV 290

[Close]

BLAST of CsaV3_7G018440.1 vs. NCBI nr
Match: KAA0051301.1 (uncharacterized protein E6C27_scaffold55G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 1   MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
           MLNWVVDNH EWK+LA KVF+N+               QF+F  MF EEDFVE+ +F EN
Sbjct: 192 MLNWVVDNHPEWKDLAEKVFDND---------------QFKFEVMF-EEDFVERMMFHEN 251

Query: 61  KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
              EET   F++G+ S Q E S  +          +I+A+N+ LNNK+++LI +VE    
Sbjct: 252 VMREETNGTFDRGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESFKD 305

Query: 121 LFKDKNSQTV 125
           + K+K +QTV
Sbjct: 312 MLKEKVNQTV 305

[Close]

BLAST of CsaV3_7G018440.1 vs. NCBI nr
Match: KAA0047364.1 (transposase [Cucumis melo var. makuwa] >TYK14041.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 52/130 (40.00%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 1   MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
           +LNWVVD+H +WK    +VF++E               QF++  MFP+++FVE+++F E 
Sbjct: 280 LLNWVVDSHPKWKP-CRRVFDHE---------------QFQYKAMFPDDNFVERSMFHER 339

Query: 61  KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
           ++T+ET   F+KG+CSRQA+ + VE          +IMA+N+ALN K++ L++K+E +  
Sbjct: 340 QSTKETHKRFKKGECSRQAKHTNVEVPKYFLKFQELIMANNQALNVKLDKLLLKIEGLKN 393

Query: 121 LFKDKNSQTV 125
           L K+K S TV
Sbjct: 400 LLKEKESATV 393

[Close]

BLAST of CsaV3_7G018440.1 vs. ExPASy TrEMBL
Match: A0A5A7V8N4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003890 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.2e-20
Identity = 64/126 (50.79%), Postives = 81/126 (64.29%), Query Frame = 0


Query: 5   VVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEENKTTE 64
           VVD+H EWK+LA +VF+NE               QFEF  MF EEDF+EQ+ F E K T+
Sbjct: 6   VVDSHLEWKDLAERVFDNE---------------QFEFKVMFLEEDFIEQSTFHERKPTK 65

Query: 65  ETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITKLFKD 124
           ET    EKG+CSRQAE + VE          +IMASN+ALN KM+ ++V+VE + KL K+
Sbjct: 66  ETRKRLEKGECSRQAEHTDVEVPKYFFRFQELIMASNEALNLKMDKMLVEVEGLKKLLKE 116

[Close]

BLAST of CsaV3_7G018440.1 vs. ExPASy TrEMBL
Match: A0A0A0K3B0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G212120 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 34  MSYMQQFEFNPMFPEEDFVEQTVFEENKTTEETENVFEKGKCSRQAERSTVEDLLSIIMA 93
           MS++QQFEF  MF EEDFVEQ  F E KTT+ETE  FEKG+CSRQ E + +EDLLSIIMA
Sbjct: 1   MSFLQQFEFKAMFLEEDFVEQNTFHERKTTKETEKRFEKGECSRQVEHTNIEDLLSIIMA 60

Query: 94  SNKALNNKMNILIVKVEEI 113
           SN+ALN KM  L+V+ E I
Sbjct: 61  SNEALNWKMEKLLVEAEGI 79

[Close]

BLAST of CsaV3_7G018440.1 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 1   MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
           MLNWVVDNH EWK+LA KVF+N+               QF+F  MF EEDFVE+ +F EN
Sbjct: 177 MLNWVVDNHPEWKDLAEKVFDND---------------QFKFEVMF-EEDFVERMMFHEN 236

Query: 61  KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
              EET   FE+G+ S Q E S  +          +I+A+N+ LNNK+++LI +VE +  
Sbjct: 237 VMREETNGTFERGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESLKD 290

Query: 121 LFKDKNSQTV 125
           + K K +QTV
Sbjct: 297 MLKKKVNQTV 290

[Close]

BLAST of CsaV3_7G018440.1 vs. ExPASy TrEMBL
Match: A0A5A7UCM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00080 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.8e-16
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 1   MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
           MLNWVVDNH EWK+LA KVF+N+               QF+F  MF EEDFVE+ +F EN
Sbjct: 192 MLNWVVDNHPEWKDLAEKVFDND---------------QFKFEVMF-EEDFVERMMFHEN 251

Query: 61  KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
              EET   F++G+ S Q E S  +          +I+A+N+ LNNK+++LI +VE    
Sbjct: 252 VMREETNGTFDRGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESFKD 305

Query: 121 LFKDKNSQTV 125
           + K+K +QTV
Sbjct: 312 MLKEKVNQTV 305

[Close]

BLAST of CsaV3_7G018440.1 vs. ExPASy TrEMBL
Match: A0A5A7TWM9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00090 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 52/130 (40.00%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 1   MLNWVVDNHQEWKELAAKVFNNEQVCLFCIVFNMSYMQQFEFNPMFPEEDFVEQTVFEEN 60
           +LNWVVD+H +WK    +VF++E               QF++  MFP+++FVE+++F E 
Sbjct: 280 LLNWVVDSHPKWKP-CRRVFDHE---------------QFQYKAMFPDDNFVERSMFHER 339

Query: 61  KTTEETENVFEKGKCSRQAERSTVE------DLLSIIMASNKALNNKMNILIVKVEEITK 120
           ++T+ET   F+KG+CSRQA+ + VE          +IMA+N+ALN K++ L++K+E +  
Sbjct: 340 QSTKETHKRFKKGECSRQAKHTNVEVPKYFLKFQELIMANNQALNVKLDKLLLKIEGLKN 393

Query: 121 LFKDKNSQTV 125
           L K+K S TV
Sbjct: 400 LLKEKESATV 393

The following BLAST results are available for this feature:

BLAST of CsaV3_7G018440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645973.1	3.5e-61	100.00	hypothetical protein Csa_015468 [Cucumis sativus]	[more]
KAA0062049.1	8.7e-20	50.79	uncharacterized protein E6C27_scaffold89G003890 [Cucumis melo var. makuwa]	[more]
TYK30586.1	5.9e-16	44.62	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0051301.1	1.0e-15	43.85	uncharacterized protein E6C27_scaffold55G00080 [Cucumis melo var. makuwa]	[more]
KAA0047364.1	2.9e-15	40.00	transposase [Cucumis melo var. makuwa] >TYK14041.1 transposase [Cucumis melo var...	[more]

BLAST of CsaV3_7G018440.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8N4	4.2e-20	50.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0K3B0	2.6e-17	67.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G212120 PE=4 SV=1	[more]
A0A5D3E3X1	2.8e-16	44.62	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00...	[more]
A0A5A7UCM5	4.8e-16	43.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TWM9	1.4e-15	40.00	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00090 PE...	[more]

BLAST of CsaV3_7G018440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G018440	CsaV3_7G018440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G018440.1.exon1	CsaV3_7G018440.1.exon1	exon
CsaV3_7G018440.1.exon2	CsaV3_7G018440.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G018440.1.cds1	CsaV3_7G018440.1.cds1	CDS
CsaV3_7G018440.1.cds2	CsaV3_7G018440.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G018440.1	CsaV3_7G018440.1-protein	polypeptide