CsaV3_3G021510 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021510
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionCarboxypeptidase Y-like
Locationchr3: 18512272 .. 18513411 (+)
RNA-Seq ExpressionCsaV3_3G021510
SyntenyCsaV3_3G021510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCATCCATTTCCACAAGATTAATCTTCTATTCTCCATTTTCTAGTGACCAATATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGGTACGTATTGAAGAATATTATTTTCCGTTTGTATATATGTATGTATGCATATATCACGTATGCATGTATTCTAATTCTTTATTTGTGTATTTACAGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGATGTTGGCGGGCCTCAAACTGGTCATCCCACCCCCTCCTCCACACCATCATCTTGATTCTGACATAGGTGGTCTGCAAATGATCATTCCACCCCCTCTACCACACCATCATCTTGATTCTGATGTTGACAACCCTCAAATGGTTATTCCCCCTCCTCCACTTCATCACATTCGCCTTTAAAATCGAACATCGTTGATAATCCCCCAATGGTCATCCCACCGCCTCCCCTCTATTATGTTCCATCCACAAAGTAATGTTTAGTGATATTATAACGATAATCCCCTACCTCCTCTATAAAGCAACTTTTATTGCATCCAATTCGATCACAACTTTAGATGTCTGATTCATTTCTTGTCACTTCCCTTGAAGTATTGAGCATAATAAGCTAATAATAATAATAATACTTACGATTATAAATATTATATGTCCATGCATATATATAGTGTATTTAGAAACAAGCTTTCACTCCCC

mRNA sequence

ATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGA

Coding sequence (CDS)

ATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGA

Protein sequence

MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPAQTSTI*
Homology
BLAST of CsaV3_3G021510 vs. NCBI nr
Match: XP_031737537.1 (splicing factor 3B subunit 4-like [Cucumis sativus] >KAE8650620.1 hypothetical protein Csa_009874 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 3.1e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0

Query: 1   MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQM 60
           MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQM
Sbjct: 1   MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQM 60

Query: 61  VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM 120
           VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM
Sbjct: 61  VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM 120

Query: 121 VIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPAQTSTI 173
           VIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPAQTSTI
Sbjct: 121 VIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPAQTSTI 172

BLAST of CsaV3_3G021510 vs. NCBI nr
Match: KAE8650608.1 (hypothetical protein Csa_010543 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 3.9e-87
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 0

Query: 1   MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQM 60
           MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPP PPHHHLDSDVGGPQM
Sbjct: 1   MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPPPPHHHLDSDVGGPQM 60

Query: 61  VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM 120
           VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM
Sbjct: 61  VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM 120

Query: 121 VIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP 167
           VIPPPPPHK PQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP
Sbjct: 121 VIPPPPPHKQPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP 166

BLAST of CsaV3_3G021510 vs. NCBI nr
Match: XP_031742365.1 (carboxypeptidase Y-like [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 3.0e-79
Identity = 151/166 (90.96%), Postives = 158/166 (95.18%), Query Frame = 0

Query: 1   MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQM 60
           MEKT+ I LLFLSLLSIAT++HCRVLLHV  QSDVGGPQMVIPP PPHHHLDSDVGGPQM
Sbjct: 1   MEKTKTINLLFLSLLSIATITHCRVLLHVGSQSDVGGPQMVIPPPPPHHHLDSDVGGPQM 60

Query: 61  VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM 120
           VIPPPPPHHHLD+DVGGP+MVIPPPP HKLPQSDVGGPQLVIPPPPPHHHLN DVGGPQM
Sbjct: 61  VIPPPPPHHHLDTDVGGPKMVIPPPPLHKLPQSDVGGPQLVIPPPPPHHHLNLDVGGPQM 120

Query: 121 VIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP 167
           VIPPPPPHKHPQSDVGG QMVIPPPPPHHHLDSD+GGPQM+IPPPP
Sbjct: 121 VIPPPPPHKHPQSDVGGLQMVIPPPPPHHHLDSDIGGPQMIIPPPP 166

BLAST of CsaV3_3G021510 vs. NCBI nr
Match: XP_031737527.1 (carboxypeptidase Y-like [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 1.7e-77
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 0

Query: 20  MSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQ 79
           MSHCRVLLHVDPQSDVGGPQMVIPP PPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQ
Sbjct: 1   MSHCRVLLHVDPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQ 60

Query: 80  MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQ 139
           MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHK PQSDVGGPQ
Sbjct: 61  MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKQPQSDVGGPQ 120

Query: 140 MVIPPPPPHHHLDSDVGGPQMVIPPPP 167
           MVIPPPPPHHHLDSDVGGPQMVIPPPP
Sbjct: 121 MVIPPPPPHHHLDSDVGGPQMVIPPPP 147

BLAST of CsaV3_3G021510 vs. NCBI nr
Match: XP_031742595.1 (pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 3.5e-75
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0

Query: 20  MSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQ 79
           MSHCRVLLHVDPQSDVGGPQ+VIPP PPHHHLDSDVGGP MVIPPPPPHHHLDSDVGGPQ
Sbjct: 1   MSHCRVLLHVDPQSDVGGPQLVIPPPPPHHHLDSDVGGPHMVIPPPPPHHHLDSDVGGPQ 60

Query: 80  MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQ 139
           MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSD+GG QMVIPPPPPHKHPQSDVGGPQ
Sbjct: 61  MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDIGGLQMVIPPPPPHKHPQSDVGGPQ 120

Query: 140 MVIPPPPPHHHLDSDVGGPQMVIPPPP 167
           MVIPPPPPHHHLDSD+GGPQMVI PPP
Sbjct: 121 MVIPPPPPHHHLDSDIGGPQMVISPPP 147

BLAST of CsaV3_3G021510 vs. ExPASy TrEMBL
Match: A0A5D3CIK1 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002070 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 138/185 (74.59%), Postives = 142/185 (76.76%), Query Frame = 0

Query: 20  MSHCRVLLHVD--------------------------------------PQSDVGGPQMV 79
           MSHCRVLLHVD                                      PQSDVGGPQMV
Sbjct: 1   MSHCRVLLHVDPQFDVGGPEMVIRPPPHHLDSDIGGPQMIIPPPPPHKFPQSDVGGPQMV 60

Query: 80  IPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLV 139
           IPP PPHHHLDSD+GGPQMVIPPPPPH H  SDVGGPQMVIPPPPPHKLPQSDVGGPQ+V
Sbjct: 61  IPPPPPHHHLDSDIGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHKLPQSDVGGPQMV 120

Query: 140 IPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMV 167
           IPPPPPHHHL+SDVGGPQMVIPPPPPHK PQSDVGGPQMVIPPPPPHHHLDSDVGGPQMV
Sbjct: 121 IPPPPPHHHLDSDVGGPQMVIPPPPPHKFPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMV 180

BLAST of CsaV3_3G021510 vs. ExPASy TrEMBL
Match: A0A5A7UNF2 (Carboxypeptidase Y-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G002060 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.5e-68
Identity = 134/167 (80.24%), Postives = 140/167 (83.83%), Query Frame = 0

Query: 20  MSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQ 79
           MSHCRVLLHVD QSD+GGPQMVIPP PPH   +SDVGGPQMVIPPPPPHHHL+SDVGGPQ
Sbjct: 1   MSHCRVLLHVDTQSDIGGPQMVIPPPPPHKVPESDVGGPQMVIPPPPPHHHLNSDVGGPQ 60

Query: 80  MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKH--------- 139
           MVIPPPPPHK PQSDVGGPQ+VIPPPPPHHHL+SDVGGPQMVIPPPPPH H         
Sbjct: 61  MVIPPPPPHKFPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHHHLDSDIGGPQ 120

Query: 140 -----------PQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP 167
                      PQSD+GGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP
Sbjct: 121 MVIPPPPPHKFPQSDIGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP 167

BLAST of CsaV3_3G021510 vs. ExPASy TrEMBL
Match: A0A5D3CDK8 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002010 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.7e-67
Identity = 127/139 (91.37%), Postives = 132/139 (94.96%), Query Frame = 0

Query: 28  HVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPP 87
           H  PQSDVGGPQMVIPP PPHHHLDSDVGGPQMVIPPPPPHHHLDSD+GGPQMVIPPPPP
Sbjct: 49  HKFPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHHHLDSDIGGPQMVIPPPPP 108

Query: 88  HKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPP 147
           HK PQSD+GGPQ+VIPPPPPHHHL+SDVGGPQMVIPPPPPH +  SDVGGPQMVIPPPPP
Sbjct: 109 HKFPQSDIGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHHYLDSDVGGPQMVIPPPPP 168

Query: 148 HHHLDSDVGGPQMVIPPPP 167
           HHHLDSDVGGPQMVIPPPP
Sbjct: 169 HHHLDSDVGGPQMVIPPPP 187

BLAST of CsaV3_3G021510 vs. ExPASy TrEMBL
Match: A0A5A7UL62 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G002120 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.9e-67
Identity = 136/185 (73.51%), Postives = 141/185 (76.22%), Query Frame = 0

Query: 20  MSHCRVLLHVDPQSDVGG--------------------------------------PQMV 79
           MSHCRVLLHVDPQ DVGG                                      PQMV
Sbjct: 1   MSHCRVLLHVDPQFDVGGPEMVIRPPPHHLDSDIGGPQMIIPPPPPHKFPQSDVGEPQMV 60

Query: 80  IPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLV 139
           IPP PPHHHLDSD+GGPQMVIPPPPPH H  SDVGGPQMVIPPPPPHKLPQSDVGGPQ+V
Sbjct: 61  IPPPPPHHHLDSDIGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHKLPQSDVGGPQMV 120

Query: 140 IPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMV 167
           IPPPPPHHHL+SDVGGPQMVIPPPPPHK PQSDVGGPQMVIPPPPPHH+LDSDVGGPQMV
Sbjct: 121 IPPPPPHHHLDSDVGGPQMVIPPPPPHKFPQSDVGGPQMVIPPPPPHHYLDSDVGGPQMV 180

BLAST of CsaV3_3G021510 vs. ExPASy TrEMBL
Match: A0A5A7VJT8 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00140 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.5e-63
Identity = 124/142 (87.32%), Postives = 128/142 (90.14%), Query Frame = 0

Query: 28  HVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPP 87
           H  PQSDVG PQMVIPP PPHH LDSD+GGPQMVIPPPPPH H   DVGGPQMVIPPP P
Sbjct: 67  HKFPQSDVGVPQMVIPPPPPHHRLDSDIGGPQMVIPPPPPHKHPQFDVGGPQMVIPPPSP 126

Query: 88  HKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPP 147
           HKLPQSDVGGPQ+VIPPPPPHHHL+SDVGGPQMVIPPPPPHK PQSDVGGPQMVIPPPPP
Sbjct: 127 HKLPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKFPQSDVGGPQMVIPPPPP 186

Query: 148 HHHLDSDVGGPQMVIPPPPAQT 170
           HHHLDSDV GPQM+IPPPP  T
Sbjct: 187 HHHLDSDVDGPQMIIPPPPPIT 208

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031737537.13.1e-92100.00splicing factor 3B subunit 4-like [Cucumis sativus] >KAE8650620.1 hypothetical p... [more]
KAE8650608.13.9e-8798.80hypothetical protein Csa_010543 [Cucumis sativus][more]
XP_031742365.13.0e-7990.96carboxypeptidase Y-like [Cucumis sativus][more]
XP_031737527.11.7e-7798.64carboxypeptidase Y-like [Cucumis sativus][more]
XP_031742595.13.5e-7595.24pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CIK12.0e-6874.59Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002070 PE=... [more]
A0A5A7UNF27.5e-6880.24Carboxypeptidase Y-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CDK81.7e-6791.37Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002010 PE=... [more]
A0A5A7UL624.9e-6773.51Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G002120 PE... [more]
A0A5A7VJT82.5e-6387.32Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00140 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021510.1CsaV3_3G021510.1mRNA