Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCATCCATTTCCACAAGATTAATCTTCTATTCTCCATTTTCTAGTGACCAATATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGGTACGTATTGAAGAATATTATTTTCCGTTTGTATATATGTATGTATGCATATATCACGTATGCATGTATTCTAATTCTTTATTTGTGTATTTACAGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGATGTTGGCGGGCCTCAAACTGGTCATCCCACCCCCTCCTCCACACCATCATCTTGATTCTGACATAGGTGGTCTGCAAATGATCATTCCACCCCCTCTACCACACCATCATCTTGATTCTGATGTTGACAACCCTCAAATGGTTATTCCCCCTCCTCCACTTCATCACATTCGCCTTTAAAATCGAACATCGTTGATAATCCCCCAATGGTCATCCCACCGCCTCCCCTCTATTATGTTCCATCCACAAAGTAATGTTTAGTGATATTATAACGATAATCCCCTACCTCCTCTATAAAGCAACTTTTATTGCATCCAATTCGATCACAACTTTAGATGTCTGATTCATTTCTTGTCACTTCCCTTGAAGTATTGAGCATAATAAGCTAATAATAATAATAATACTTACGATTATAAATATTATATGTCCATGCATATATATAGTGTATTTAGAAACAAGCTTTCACTCCCC
mRNA sequence
ATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGA
Coding sequence (CDS)
ATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGA
Protein sequence
MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPAQTSTI*
Homology
BLAST of CsaV3_3G021510 vs. NCBI nr
Match:
XP_031737537.1 (splicing factor 3B subunit 4-like [Cucumis sativus] >KAE8650620.1 hypothetical protein Csa_009874 [Cucumis sativus])
HSP 1 Score: 348.6 bits (893), Expect = 3.1e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query: 1 MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQM 60
MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQM
Sbjct: 1 MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQM 60
Query: 61 VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM 120
VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM
Sbjct: 61 VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM 120
Query: 121 VIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPAQTSTI 173
VIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPAQTSTI
Sbjct: 121 VIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPAQTSTI 172
BLAST of CsaV3_3G021510 vs. NCBI nr
Match:
KAE8650608.1 (hypothetical protein Csa_010543 [Cucumis sativus])
HSP 1 Score: 331.6 bits (849), Expect = 3.9e-87
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 0
Query: 1 MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQM 60
MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPP PPHHHLDSDVGGPQM
Sbjct: 1 MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPPPPHHHLDSDVGGPQM 60
Query: 61 VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM 120
VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM
Sbjct: 61 VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM 120
Query: 121 VIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP 167
VIPPPPPHK PQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP
Sbjct: 121 VIPPPPPHKQPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP 166
BLAST of CsaV3_3G021510 vs. NCBI nr
Match:
XP_031742365.1 (carboxypeptidase Y-like [Cucumis sativus])
HSP 1 Score: 305.4 bits (781), Expect = 3.0e-79
Identity = 151/166 (90.96%), Postives = 158/166 (95.18%), Query Frame = 0
Query: 1 MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQM 60
MEKT+ I LLFLSLLSIAT++HCRVLLHV QSDVGGPQMVIPP PPHHHLDSDVGGPQM
Sbjct: 1 MEKTKTINLLFLSLLSIATITHCRVLLHVGSQSDVGGPQMVIPPPPPHHHLDSDVGGPQM 60
Query: 61 VIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQM 120
VIPPPPPHHHLD+DVGGP+MVIPPPP HKLPQSDVGGPQLVIPPPPPHHHLN DVGGPQM
Sbjct: 61 VIPPPPPHHHLDTDVGGPKMVIPPPPLHKLPQSDVGGPQLVIPPPPPHHHLNLDVGGPQM 120
Query: 121 VIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP 167
VIPPPPPHKHPQSDVGG QMVIPPPPPHHHLDSD+GGPQM+IPPPP
Sbjct: 121 VIPPPPPHKHPQSDVGGLQMVIPPPPPHHHLDSDIGGPQMIIPPPP 166
BLAST of CsaV3_3G021510 vs. NCBI nr
Match:
XP_031737527.1 (carboxypeptidase Y-like [Cucumis sativus])
HSP 1 Score: 299.7 bits (766), Expect = 1.7e-77
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 0
Query: 20 MSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQ 79
MSHCRVLLHVDPQSDVGGPQMVIPP PPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQ
Sbjct: 1 MSHCRVLLHVDPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQ 60
Query: 80 MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQ 139
MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHK PQSDVGGPQ
Sbjct: 61 MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKQPQSDVGGPQ 120
Query: 140 MVIPPPPPHHHLDSDVGGPQMVIPPPP 167
MVIPPPPPHHHLDSDVGGPQMVIPPPP
Sbjct: 121 MVIPPPPPHHHLDSDVGGPQMVIPPPP 147
BLAST of CsaV3_3G021510 vs. NCBI nr
Match:
XP_031742595.1 (pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis sativus])
HSP 1 Score: 292.0 bits (746), Expect = 3.5e-75
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0
Query: 20 MSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQ 79
MSHCRVLLHVDPQSDVGGPQ+VIPP PPHHHLDSDVGGP MVIPPPPPHHHLDSDVGGPQ
Sbjct: 1 MSHCRVLLHVDPQSDVGGPQLVIPPPPPHHHLDSDVGGPHMVIPPPPPHHHLDSDVGGPQ 60
Query: 80 MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQ 139
MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSD+GG QMVIPPPPPHKHPQSDVGGPQ
Sbjct: 61 MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDIGGLQMVIPPPPPHKHPQSDVGGPQ 120
Query: 140 MVIPPPPPHHHLDSDVGGPQMVIPPPP 167
MVIPPPPPHHHLDSD+GGPQMVI PPP
Sbjct: 121 MVIPPPPPHHHLDSDIGGPQMVISPPP 147
BLAST of CsaV3_3G021510 vs. ExPASy TrEMBL
Match:
A0A5D3CIK1 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002070 PE=4 SV=1)
HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 138/185 (74.59%), Postives = 142/185 (76.76%), Query Frame = 0
Query: 20 MSHCRVLLHVD--------------------------------------PQSDVGGPQMV 79
MSHCRVLLHVD PQSDVGGPQMV
Sbjct: 1 MSHCRVLLHVDPQFDVGGPEMVIRPPPHHLDSDIGGPQMIIPPPPPHKFPQSDVGGPQMV 60
Query: 80 IPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLV 139
IPP PPHHHLDSD+GGPQMVIPPPPPH H SDVGGPQMVIPPPPPHKLPQSDVGGPQ+V
Sbjct: 61 IPPPPPHHHLDSDIGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHKLPQSDVGGPQMV 120
Query: 140 IPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMV 167
IPPPPPHHHL+SDVGGPQMVIPPPPPHK PQSDVGGPQMVIPPPPPHHHLDSDVGGPQMV
Sbjct: 121 IPPPPPHHHLDSDVGGPQMVIPPPPPHKFPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMV 180
BLAST of CsaV3_3G021510 vs. ExPASy TrEMBL
Match:
A0A5A7UNF2 (Carboxypeptidase Y-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G002060 PE=4 SV=1)
HSP 1 Score: 266.5 bits (680), Expect = 7.5e-68
Identity = 134/167 (80.24%), Postives = 140/167 (83.83%), Query Frame = 0
Query: 20 MSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQ 79
MSHCRVLLHVD QSD+GGPQMVIPP PPH +SDVGGPQMVIPPPPPHHHL+SDVGGPQ
Sbjct: 1 MSHCRVLLHVDTQSDIGGPQMVIPPPPPHKVPESDVGGPQMVIPPPPPHHHLNSDVGGPQ 60
Query: 80 MVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKH--------- 139
MVIPPPPPHK PQSDVGGPQ+VIPPPPPHHHL+SDVGGPQMVIPPPPPH H
Sbjct: 61 MVIPPPPPHKFPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHHHLDSDIGGPQ 120
Query: 140 -----------PQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP 167
PQSD+GGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP
Sbjct: 121 MVIPPPPPHKFPQSDIGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPP 167
BLAST of CsaV3_3G021510 vs. ExPASy TrEMBL
Match:
A0A5D3CDK8 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002010 PE=4 SV=1)
HSP 1 Score: 265.4 bits (677), Expect = 1.7e-67
Identity = 127/139 (91.37%), Postives = 132/139 (94.96%), Query Frame = 0
Query: 28 HVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPP 87
H PQSDVGGPQMVIPP PPHHHLDSDVGGPQMVIPPPPPHHHLDSD+GGPQMVIPPPPP
Sbjct: 49 HKFPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHHHLDSDIGGPQMVIPPPPP 108
Query: 88 HKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPP 147
HK PQSD+GGPQ+VIPPPPPHHHL+SDVGGPQMVIPPPPPH + SDVGGPQMVIPPPPP
Sbjct: 109 HKFPQSDIGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHHYLDSDVGGPQMVIPPPPP 168
Query: 148 HHHLDSDVGGPQMVIPPPP 167
HHHLDSDVGGPQMVIPPPP
Sbjct: 169 HHHLDSDVGGPQMVIPPPP 187
BLAST of CsaV3_3G021510 vs. ExPASy TrEMBL
Match:
A0A5A7UL62 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G002120 PE=4 SV=1)
HSP 1 Score: 263.8 bits (673), Expect = 4.9e-67
Identity = 136/185 (73.51%), Postives = 141/185 (76.22%), Query Frame = 0
Query: 20 MSHCRVLLHVDPQSDVGG--------------------------------------PQMV 79
MSHCRVLLHVDPQ DVGG PQMV
Sbjct: 1 MSHCRVLLHVDPQFDVGGPEMVIRPPPHHLDSDIGGPQMIIPPPPPHKFPQSDVGEPQMV 60
Query: 80 IPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLV 139
IPP PPHHHLDSD+GGPQMVIPPPPPH H SDVGGPQMVIPPPPPHKLPQSDVGGPQ+V
Sbjct: 61 IPPPPPHHHLDSDIGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHKLPQSDVGGPQMV 120
Query: 140 IPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMV 167
IPPPPPHHHL+SDVGGPQMVIPPPPPHK PQSDVGGPQMVIPPPPPHH+LDSDVGGPQMV
Sbjct: 121 IPPPPPHHHLDSDVGGPQMVIPPPPPHKFPQSDVGGPQMVIPPPPPHHYLDSDVGGPQMV 180
BLAST of CsaV3_3G021510 vs. ExPASy TrEMBL
Match:
A0A5A7VJT8 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00140 PE=4 SV=1)
HSP 1 Score: 251.5 bits (641), Expect = 2.5e-63
Identity = 124/142 (87.32%), Postives = 128/142 (90.14%), Query Frame = 0
Query: 28 HVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPP 87
H PQSDVG PQMVIPP PPHH LDSD+GGPQMVIPPPPPH H DVGGPQMVIPPP P
Sbjct: 67 HKFPQSDVGVPQMVIPPPPPHHRLDSDIGGPQMVIPPPPPHKHPQFDVGGPQMVIPPPSP 126
Query: 88 HKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPP 147
HKLPQSDVGGPQ+VIPPPPPHHHL+SDVGGPQMVIPPPPPHK PQSDVGGPQMVIPPPPP
Sbjct: 127 HKLPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKFPQSDVGGPQMVIPPPPP 186
Query: 148 HHHLDSDVGGPQMVIPPPPAQT 170
HHHLDSDV GPQM+IPPPP T
Sbjct: 187 HHHLDSDVDGPQMIIPPPPPIT 208
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_031737537.1 | 3.1e-92 | 100.00 | splicing factor 3B subunit 4-like [Cucumis sativus] >KAE8650620.1 hypothetical p... | [more] |
KAE8650608.1 | 3.9e-87 | 98.80 | hypothetical protein Csa_010543 [Cucumis sativus] | [more] |
XP_031742365.1 | 3.0e-79 | 90.96 | carboxypeptidase Y-like [Cucumis sativus] | [more] |
XP_031737527.1 | 1.7e-77 | 98.64 | carboxypeptidase Y-like [Cucumis sativus] | [more] |
XP_031742595.1 | 3.5e-75 | 95.24 | pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CIK1 | 2.0e-68 | 74.59 | Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002070 PE=... | [more] |
A0A5A7UNF2 | 7.5e-68 | 80.24 | Carboxypeptidase Y-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CDK8 | 1.7e-67 | 91.37 | Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002010 PE=... | [more] |
A0A5A7UL62 | 4.9e-67 | 73.51 | Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G002120 PE... | [more] |
A0A5A7VJT8 | 2.5e-63 | 87.32 | Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00140 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |