CsaV3_3G021510.1 (mRNA) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CCTCCATCCATTTCCACAAGATTAATCTTCTATTCTCCATTTTCTAGTGACCAATATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGGTACGTATTGAAGAATATTATTTTCCGTTTGTATATATGTATGTATGCATATATCACGTATGCATGTATTCTAATTCTTTATTTGTGTATTTACAGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGATGTTGGCGGGCCTCAAACTGGTCATCCCACCCCCTCCTCCACACCATCATCTTGATTCTGACATAGGTGGTCTGCAAATGATCATTCCACCCCCTCTACCACACCATCATCTTGATTCTGATGTTGACAACCCTCAAATGGTTATTCCCCCTCCTCCACTTCATCACATTCGCCTTTAAAATCGAACATCGTTGATAATCCCCCAATGGTCATCCCACCGCCTCCCCTCTATTATGTTCCATCCACAAAGTAATGTTTAGTGATATTATAACGATAATCCCCTACCTCCTCTATAAAGCAACTTTTATTGCATCCAATTCGATCACAACTTTAGATGTCTGATTCATTTCTTGTCACTTCCCTTGAAGTATTGAGCATAATAAGCTAATAATAATAATAATACTTACGATTATAAATATTATATGTCCATGCATATATATAGTGTATTTAGAAACAAGCTTTCACTCCCC ATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGA ATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGA MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPAQTSTI* Homology
BLAST of CsaV3_3G021510.1 vs. NCBI nr
Match: XP_031737537.1 (splicing factor 3B subunit 4-like [Cucumis sativus] >KAE8650620.1 hypothetical protein Csa_009874 [Cucumis sativus]) HSP 1 Score: 348.6 bits (893), Expect = 3.1e-92 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
BLAST of CsaV3_3G021510.1 vs. NCBI nr
Match: KAE8650608.1 (hypothetical protein Csa_010543 [Cucumis sativus]) HSP 1 Score: 331.6 bits (849), Expect = 3.9e-87 Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 0
BLAST of CsaV3_3G021510.1 vs. NCBI nr
Match: XP_031742365.1 (carboxypeptidase Y-like [Cucumis sativus]) HSP 1 Score: 305.4 bits (781), Expect = 3.0e-79 Identity = 151/166 (90.96%), Postives = 158/166 (95.18%), Query Frame = 0
BLAST of CsaV3_3G021510.1 vs. NCBI nr
Match: XP_031737527.1 (carboxypeptidase Y-like [Cucumis sativus]) HSP 1 Score: 299.7 bits (766), Expect = 1.7e-77 Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 0
BLAST of CsaV3_3G021510.1 vs. NCBI nr
Match: XP_031742595.1 (pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis sativus]) HSP 1 Score: 292.0 bits (746), Expect = 3.5e-75 Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0
BLAST of CsaV3_3G021510.1 vs. ExPASy TrEMBL
Match: A0A5D3CIK1 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002070 PE=4 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68 Identity = 138/185 (74.59%), Postives = 142/185 (76.76%), Query Frame = 0
BLAST of CsaV3_3G021510.1 vs. ExPASy TrEMBL
Match: A0A5A7UNF2 (Carboxypeptidase Y-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G002060 PE=4 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 7.5e-68 Identity = 134/167 (80.24%), Postives = 140/167 (83.83%), Query Frame = 0
BLAST of CsaV3_3G021510.1 vs. ExPASy TrEMBL
Match: A0A5D3CDK8 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002010 PE=4 SV=1) HSP 1 Score: 265.4 bits (677), Expect = 1.7e-67 Identity = 127/139 (91.37%), Postives = 132/139 (94.96%), Query Frame = 0
BLAST of CsaV3_3G021510.1 vs. ExPASy TrEMBL
Match: A0A5A7UL62 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G002120 PE=4 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 4.9e-67 Identity = 136/185 (73.51%), Postives = 141/185 (76.22%), Query Frame = 0
BLAST of CsaV3_3G021510.1 vs. ExPASy TrEMBL
Match: A0A5A7VJT8 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00140 PE=4 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 2.5e-63 Identity = 124/142 (87.32%), Postives = 128/142 (90.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|