Cp4.1LG19g04410 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g04410
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUNC93-like protein 3
LocationCp4.1LG19: 3329268 .. 3329618 (-)
RNA-Seq ExpressionCp4.1LG19g04410
SyntenyCp4.1LG19g04410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCGATTACTGTACCGTCGTCTCCGATCGCGGTGGCCGCTTCTTGTCTACTCCGCCTCCTGGACGATTCTCTTGACTCTCACCGTCGCCGCCGCCTCCTTCGCGCCCGAGCTCGCCTTCGCCTCCGCAATTTCTCCGTCCTCGTCCTTTGCTTCACACTGCAAGGCCGCTGGATTCGTTAGGGTTCCGATGGATTTTCCGGGAGACGTCGTCTGCGTTCCGGATAATCTGTTTAGAAAATCCGGAATTGATCTCATCGTGCCTCCTATTTTCGCCGCGGTTGTAGTAGCCGGGTCGGCTTGCTTTGTTCGGGCCTTGGGCCTTTGGGCCGACGATGACTCCCTCTGA

mRNA sequence

ATGCTCCGATTACTGTACCGTCGTCTCCGATCGCGGTGGCCGCTTCTTGTCTACTCCGCCTCCTGGACGATTCTCTTGACTCTCACCGTCGCCGCCGCCTCCTTCGCGCCCGAGCTCGCCTTCGCCTCCGCAATTTCTCCGTCCTCGTCCTTTGCTTCACACTGCAAGGCCGCTGGATTCGTTAGGGTTCCGATGGATTTTCCGGGAGACGTCGTCTGCGTTCCGGATAATCTGTTTAGAAAATCCGGAATTGATCTCATCGTGCCTCCTATTTTCGCCGCGGTTGTAGTAGCCGGGTCGGCTTGCTTTGTTCGGGCCTTGGGCCTTTGGGCCGACGATGACTCCCTCTGA

Coding sequence (CDS)

ATGCTCCGATTACTGTACCGTCGTCTCCGATCGCGGTGGCCGCTTCTTGTCTACTCCGCCTCCTGGACGATTCTCTTGACTCTCACCGTCGCCGCCGCCTCCTTCGCGCCCGAGCTCGCCTTCGCCTCCGCAATTTCTCCGTCCTCGTCCTTTGCTTCACACTGCAAGGCCGCTGGATTCGTTAGGGTTCCGATGGATTTTCCGGGAGACGTCGTCTGCGTTCCGGATAATCTGTTTAGAAAATCCGGAATTGATCTCATCGTGCCTCCTATTTTCGCCGCGGTTGTAGTAGCCGGGTCGGCTTGCTTTGTTCGGGCCTTGGGCCTTTGGGCCGACGATGACTCCCTCTGA

Protein sequence

MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGFVRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL
Homology
BLAST of Cp4.1LG19g04410 vs. NCBI nr
Match: XP_022963374.1 (uncharacterized protein LOC111463600 [Cucurbita moschata] >XP_023517164.1 uncharacterized protein LOC111781002 [Cucurbita pepo subsp. pepo] >KAG6595307.1 hypothetical protein SDJN03_11860, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027317.1 hypothetical protein SDJN02_11329, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227 bits (579), Expect = 6.86e-75
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF
Sbjct: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116
           VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL
Sbjct: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116

BLAST of Cp4.1LG19g04410 vs. NCBI nr
Match: XP_022972738.1 (uncharacterized protein LOC111471253 [Cucurbita maxima])

HSP 1 Score: 225 bits (574), Expect = 3.97e-74
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF
Sbjct: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116
           VRVPM+FPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL
Sbjct: 61  VRVPMNFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116

BLAST of Cp4.1LG19g04410 vs. NCBI nr
Match: XP_038883336.1 (uncharacterized protein LOC120074319 [Benincasa hispida])

HSP 1 Score: 209 bits (532), Expect = 1.01e-67
Identity = 105/116 (90.52%), Postives = 110/116 (94.83%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLR LYRRL+SRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSF +HCK+ G 
Sbjct: 1   MLRFLYRRLKSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFTAHCKSDGL 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116
           VRVPMD PGDV+CVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD+L
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDAL 116

BLAST of Cp4.1LG19g04410 vs. NCBI nr
Match: XP_004142209.1 (uncharacterized protein LOC101207834 [Cucumis sativus] >KGN54232.1 hypothetical protein Csa_018146 [Cucumis sativus])

HSP 1 Score: 204 bits (520), Expect = 7.31e-66
Identity = 103/114 (90.35%), Postives = 108/114 (94.74%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLR LYRRLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSSSFA+ CK+ G 
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114
           VRVPMD PGDV+CVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114

BLAST of Cp4.1LG19g04410 vs. NCBI nr
Match: KAA0032619.1 (uncharacterized protein E6C27_scaffold184G00030 [Cucumis melo var. makuwa] >TYK23500.1 uncharacterized protein E5676_scaffold500G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (515), Expect = 4.23e-65
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLR LYRRLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSSSFA+ CK+ G 
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114
           VRVPMD PGDV+CVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADD+
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDN 114

BLAST of Cp4.1LG19g04410 vs. ExPASy TrEMBL
Match: A0A6J1HJX3 (uncharacterized protein LOC111463600 OS=Cucurbita moschata OX=3662 GN=LOC111463600 PE=4 SV=1)

HSP 1 Score: 227 bits (579), Expect = 3.32e-75
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF
Sbjct: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116
           VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL
Sbjct: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116

BLAST of Cp4.1LG19g04410 vs. ExPASy TrEMBL
Match: A0A6J1IAZ3 (uncharacterized protein LOC111471253 OS=Cucurbita maxima OX=3661 GN=LOC111471253 PE=4 SV=1)

HSP 1 Score: 225 bits (574), Expect = 1.92e-74
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF
Sbjct: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116
           VRVPM+FPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL
Sbjct: 61  VRVPMNFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116

BLAST of Cp4.1LG19g04410 vs. ExPASy TrEMBL
Match: A0A0A0L0V5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294400 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 3.54e-66
Identity = 103/114 (90.35%), Postives = 108/114 (94.74%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLR LYRRLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSSSFA+ CK+ G 
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114
           VRVPMD PGDV+CVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114

BLAST of Cp4.1LG19g04410 vs. ExPASy TrEMBL
Match: A0A5A7STU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00020 PE=4 SV=1)

HSP 1 Score: 202 bits (515), Expect = 2.05e-65
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLR LYRRLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSSSFA+ CK+ G 
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114
           VRVPMD PGDV+CVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADD+
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDN 114

BLAST of Cp4.1LG19g04410 vs. ExPASy TrEMBL
Match: A0A6J1CRS0 (uncharacterized protein LOC111013670 OS=Momordica charantia OX=3673 GN=LOC111013670 PE=4 SV=1)

HSP 1 Score: 191 bits (484), Expect = 1.24e-60
Identity = 101/120 (84.17%), Postives = 104/120 (86.67%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAA-- 60
           MLR L+RRLRSRWPLLVYSASWTILLTLTVA ASFAPELAFASAISPSSSFA+ CKA   
Sbjct: 1   MLRFLFRRLRSRWPLLVYSASWTILLTLTVAVASFAPELAFASAISPSSSFAAQCKAGVG 60

Query: 61  ----GFVRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114
               G VRVPMD PGDV+CVPD LFRKS IDLIVPPIFAAVVVAGSAC VRA GLWADDD
Sbjct: 61  GGGGGLVRVPMDLPGDVLCVPDLLFRKSRIDLIVPPIFAAVVVAGSACVVRAFGLWADDD 120

BLAST of Cp4.1LG19g04410 vs. TAIR 10
Match: AT2G37530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-25
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 0

Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSS--FASHCKAA 60
           M   L  R   R P  VY A+WT+ LTLTVA  S APE AF SAI PSSS  F+  C + 
Sbjct: 5   MFSSLTHRFAWRIPHFVYGATWTLFLTLTVAIISLAPEFAFVSAIFPSSSEVFSRRCGSY 64

Query: 61  GFVRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDS 116
             + VP+D P +V+C+P NLFR+S +DL+VPP+FAA+VVA SA  VR +GLW  D++
Sbjct: 65  AAILVPLDLPSEVLCLPANLFRRSKMDLVVPPVFAAIVVALSAVVVRTMGLWEADEA 121

BLAST of Cp4.1LG19g04410 vs. TAIR 10
Match: AT1G07795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 4.1e-22
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 0

Query: 7   RRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGFVRVPMD 66
           R +  RWP++  +A+WT+LL  TVA ASFAPE+AF S +S S          GFV++PMD
Sbjct: 14  RSVSDRWPVIAQAATWTVLLMFTVAVASFAPEMAFVSTVSSSCGGGD-----GFVKIPMD 73

Query: 67  FPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRA 107
           F G+ +CVP N+ ++S  DL VP IFAAV+V  SAC +R+
Sbjct: 74  FAGESICVPSNMVKRSRFDLFVPSIFAAVMVTASACLIRS 108

BLAST of Cp4.1LG19g04410 vs. TAIR 10
Match: AT2G28725.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 6.8e-17
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 0

Query: 5   LYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGFVRVP 64
           +  +  +RW +LV +A+WTILL +TVA ASFAPE+AF S +  SS         GFVR+P
Sbjct: 4   ILEKTSTRWEVLVQTATWTILLMITVALASFAPEMAFVSKLKSSSD--------GFVRIP 63

Query: 65  MDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRA 107
           MD PG+++ +P  + + S +D+ +P IFA V+V  S   +R+
Sbjct: 64  MDLPGEMLILPSEMVKNSYLDVFLPTIFAGVMVIASVSLLRS 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022963374.16.86e-75100.00uncharacterized protein LOC111463600 [Cucurbita moschata] >XP_023517164.1 unchar... [more]
XP_022972738.13.97e-7499.14uncharacterized protein LOC111471253 [Cucurbita maxima][more]
XP_038883336.11.01e-6790.52uncharacterized protein LOC120074319 [Benincasa hispida][more]
XP_004142209.17.31e-6690.35uncharacterized protein LOC101207834 [Cucumis sativus] >KGN54232.1 hypothetical ... [more]
KAA0032619.14.23e-6589.47uncharacterized protein E6C27_scaffold184G00030 [Cucumis melo var. makuwa] >TYK2... [more]
Match NameE-valueIdentityDescription
A0A6J1HJX33.32e-75100.00uncharacterized protein LOC111463600 OS=Cucurbita moschata OX=3662 GN=LOC1114636... [more]
A0A6J1IAZ31.92e-7499.14uncharacterized protein LOC111471253 OS=Cucurbita maxima OX=3661 GN=LOC111471253... [more]
A0A0A0L0V53.54e-6690.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294400 PE=4 SV=1[more]
A0A5A7STU52.05e-6589.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1CRS01.24e-6084.17uncharacterized protein LOC111013670 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
Match NameE-valueIdentityDescription
AT2G37530.11.1e-2552.99unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G07795.14.1e-2250.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G28725.16.8e-1743.14unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34658OS01G0151800 PROTEINcoord: 3..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g04410.1Cp4.1LG19g04410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane