Cp4.1LG11g06050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g06050
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG11: 3588455 .. 3589384 (-)
RNA-Seq ExpressionCp4.1LG11g06050
SyntenyCp4.1LG11g06050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTATGGGTTGTGGTAATAGAGCTTTAAGTGACCTTTTTAACTTCTGATTCTCATATTGAATATCCTAGTAACGTTTGCTTGAAGCTGTTTGTTCTCTCTTTCGAAACTATTGCTATTTTTTATGTGGGATGATTGAAACAGTTTGACCTTATAAGCGATATCTTGTAGTTTCAACTATGAAATCTGATTCGTTTTGTTTGTGGTGGTAGAAAAACGCAGCTATGTCAGGGAAGCAGCTAGATCAATGGGGGAATGGGTACCAAAGTTACGACGATGATTTGGATGACTACTCGTACAGTCCTCCTCGCAAGGGAATGTACAAGTGGCAAGAATAGGATATGTGGGTGTTGTTAGTGTAGAAGACAAACAAGTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGCAACAGGCATACTGGAACCTATACGACCGCTTCAACAAAGGAGGTTGCTTCTCGTGGTGAAACATTCAAGGAGAGGTCAAGTGGGAGAGTTGGGTCGAAGGATGAGTTCAAAACCACCTCCACTTACAGGGTAGGTGACCGAAATGGATATACCGAGTATCAGCATCAAGAGAGGTTCCGGCGTGTTGATTTTGGCAGCGGCGGCAGCAGCAGCAGCAGAATAAGAGTAGAATTTAGTAGCTGGAACTTGGGTTTGTGGAGTCCCTTTTGTGCAGACTTGCTCTTTGATATGCTGTTTTCTGCCGTAGAAAATAAGATTGAAGAGATAGGCTTTTGTCGTTTTTTTGGTGTTTGCAATGCTCTGATAGATTTAGAGAGCTGAATTGAATATCAGGTATGTTGATAGTCTGTTTGCATATTAGTGTCAAAACTAATCTTCTTTAGGGTAATTTGTTCGTACATTTTGTATCTTTTTGAAGGGTATTATTTTAAGATACAAAATCAAATGAAAATTAA

mRNA sequence

ATGCTTAAAAACGCAGCTATGTCAGGGAAGCAGCTAGATCAATGGGGGAATGGGTACCAAAGTTACGACGATGATTTGGATGACTACTCGTACAGTCCTCCTCGCAAGGGAATTGTAGAAGACAAACAAGTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGCAACAGGCATACTGGAACCTATACGACCGCTTCAACAAAGGAGGTTGCTTCTCGTGGTGAAACATTCAAGGAGAGGTCAAGTGGGAGAGTTGGGTCGAAGGATGAGTTCAAAACCACCTCCACTTACAGGGTAGGTGACCGAAATGGATATACCGAGTATCAGCATCAAGAGAGGTTCCGGCGTGTTGATTTTGGCAGCGGCGGCAGCAGCAGCAGCAGAATAAGAGTAGAATTTAGTAGCTGGAACTTGGATACAAAATCAAATGAAAATTAA

Coding sequence (CDS)

ATGCTTAAAAACGCAGCTATGTCAGGGAAGCAGCTAGATCAATGGGGGAATGGGTACCAAAGTTACGACGATGATTTGGATGACTACTCGTACAGTCCTCCTCGCAAGGGAATTGTAGAAGACAAACAAGTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGCAACAGGCATACTGGAACCTATACGACCGCTTCAACAAAGGAGGTTGCTTCTCGTGGTGAAACATTCAAGGAGAGGTCAAGTGGGAGAGTTGGGTCGAAGGATGAGTTCAAAACCACCTCCACTTACAGGGTAGGTGACCGAAATGGATATACCGAGTATCAGCATCAAGAGAGGTTCCGGCGTGTTGATTTTGGCAGCGGCGGCAGCAGCAGCAGCAGAATAAGAGTAGAATTTAGTAGCTGGAACTTGGATACAAAATCAAATGAAAATTAA

Protein sequence

MLKNAAMSGKQLDQWGNGYQSYDDDLDDYSYSPPRKGIVEDKQVSSYEQSWRTHDRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQERFRRVDFGSGGSSSSRIRVEFSSWNLDTKSNEN
Homology
BLAST of Cp4.1LG11g06050 vs. NCBI nr
Match: XP_022929740.1 (uncharacterized protein LOC111436237 [Cucurbita moschata])

HSP 1 Score: 238 bits (607), Expect = 1.17e-77
Identity = 122/146 (83.56%), Postives = 126/146 (86.30%), Query Frame = 0

Query: 7   MSGKQLDQWGNGYQSYDDDLDDYSYSPPRKGIV-------------EDKQVSSYEQSWRT 66
           MSGKQLDQWGNGYQSYDDDLDDYSYSPP +G V             E KQVSSYEQSWRT
Sbjct: 1   MSGKQLDQWGNGYQSYDDDLDDYSYSPPLQGNVQVARIGYVGVVSAEVKQVSSYEQSWRT 60

Query: 67  HDRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQE 126
           HDRNR TG+YTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR+GYTEYQ QE
Sbjct: 61  HDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQRQE 120

Query: 127 RFRRVDFGSGGSSSSRIRVEFSSWNL 139
           RFRRVDFGSGGSSS+ IRVEF SWNL
Sbjct: 121 RFRRVDFGSGGSSSNSIRVEFGSWNL 146

BLAST of Cp4.1LG11g06050 vs. NCBI nr
Match: KAG7029798.1 (hypothetical protein SDJN02_08141, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231 bits (590), Expect = 1.61e-75
Identity = 119/143 (83.22%), Postives = 124/143 (86.71%), Query Frame = 0

Query: 2   LKNAAMSGKQLDQWGNGYQSYDDDLDDYSYSPPRKGIV-------------EDKQVSSYE 61
           +KNAAMSGKQLDQWGNGYQSYDDDLDDYSYSPP +G V             E KQVSSYE
Sbjct: 1   MKNAAMSGKQLDQWGNGYQSYDDDLDDYSYSPPLQGNVQVARIGYVGVVSAEVKQVSSYE 60

Query: 62  QSWRTHDRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTE 121
           QSWRTHDRNR TG+YTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR+GYTE
Sbjct: 61  QSWRTHDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTE 120

Query: 122 YQHQERFRRVDFGSGGSSSSRIR 131
           YQ QERFRRVDFGSGGSSS+ IR
Sbjct: 121 YQRQERFRRVDFGSGGSSSNSIR 143

BLAST of Cp4.1LG11g06050 vs. NCBI nr
Match: KAG6598857.1 (hypothetical protein SDJN03_08635, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230 bits (587), Expect = 2.68e-74
Identity = 119/142 (83.80%), Postives = 123/142 (86.62%), Query Frame = 0

Query: 3   KNAAMSGKQLDQWGNGYQSYDDDLDDYSYSPPRKGIV-------------EDKQVSSYEQ 62
           KNAAMSGKQLDQWGNGYQSYDDDLDDYSYSPP +G V             E KQVSSYEQ
Sbjct: 28  KNAAMSGKQLDQWGNGYQSYDDDLDDYSYSPPLQGNVQVARIGYVGVVSAEVKQVSSYEQ 87

Query: 63  SWRTHDRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEY 122
           SWRTHDRNR TG+YTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR+GYTEY
Sbjct: 88  SWRTHDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEY 147

Query: 123 QHQERFRRVDFGSGGSSSSRIR 131
           Q QERFRRVDFGSGGSSS+ IR
Sbjct: 148 QRQERFRRVDFGSGGSSSNSIR 169

BLAST of Cp4.1LG11g06050 vs. NCBI nr
Match: XP_022997473.1 (uncharacterized protein LOC111492379 [Cucurbita maxima])

HSP 1 Score: 219 bits (559), Expect = 6.76e-71
Identity = 113/136 (83.09%), Postives = 117/136 (86.03%), Query Frame = 0

Query: 7   MSGKQLDQWGNGYQSYDDDLDDYSYSPPRKGIV-------------EDKQVSSYEQSWRT 66
           MSGKQLDQWG+GYQSYD DLDDYSYSPP +G V             EDKQVSSYEQSWRT
Sbjct: 1   MSGKQLDQWGSGYQSYDYDLDDYSYSPPSQGNVQVARMGYVGVVSAEDKQVSSYEQSWRT 60

Query: 67  HDRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQE 126
           HDRNR TG+YTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR+GYTEYQHQE
Sbjct: 61  HDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQHQE 120

Query: 127 RFRRVDFGSGGSSSSR 129
           RFRRVDFGSG SSS R
Sbjct: 121 RFRRVDFGSGSSSSIR 136

BLAST of Cp4.1LG11g06050 vs. NCBI nr
Match: XP_022157391.1 (uncharacterized protein LOC111024099 [Momordica charantia])

HSP 1 Score: 175 bits (444), Expect = 2.32e-53
Identity = 94/142 (66.20%), Postives = 104/142 (73.24%), Query Frame = 0

Query: 7   MSGKQLDQWGNGYQSYDDDLDDYSYSPPRKG------------IVEDKQVSSYEQSWRTH 66
           MSGKQLDQW +G Q YD D DDYSY PP +G            + ED Q S YE+SWR H
Sbjct: 1   MSGKQLDQW-SGDQDYDYDSDDYSYDPPSQGYEIQPRCGYAVVVQEDNQASRYEKSWRCH 60

Query: 67  DRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQER 126
           DR+R TG Y TASTKEVASRGETFKERS+GRVG KDEFKTTST RVGDR+GYTEYQ QE 
Sbjct: 61  DRDRQTGNYKTASTKEVASRGETFKERSTGRVGYKDEFKTTSTCRVGDRSGYTEYQRQET 120

Query: 127 FRRVDFGSGGSSSSRIRVEFSS 136
           +RRVDFGS GS S   +  +SS
Sbjct: 121 YRRVDFGSSGSGSKGGQSNYSS 141

BLAST of Cp4.1LG11g06050 vs. ExPASy TrEMBL
Match: A0A6J1EV61 (uncharacterized protein LOC111436237 OS=Cucurbita moschata OX=3662 GN=LOC111436237 PE=4 SV=1)

HSP 1 Score: 238 bits (607), Expect = 5.66e-78
Identity = 122/146 (83.56%), Postives = 126/146 (86.30%), Query Frame = 0

Query: 7   MSGKQLDQWGNGYQSYDDDLDDYSYSPPRKGIV-------------EDKQVSSYEQSWRT 66
           MSGKQLDQWGNGYQSYDDDLDDYSYSPP +G V             E KQVSSYEQSWRT
Sbjct: 1   MSGKQLDQWGNGYQSYDDDLDDYSYSPPLQGNVQVARIGYVGVVSAEVKQVSSYEQSWRT 60

Query: 67  HDRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQE 126
           HDRNR TG+YTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR+GYTEYQ QE
Sbjct: 61  HDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQRQE 120

Query: 127 RFRRVDFGSGGSSSSRIRVEFSSWNL 139
           RFRRVDFGSGGSSS+ IRVEF SWNL
Sbjct: 121 RFRRVDFGSGGSSSNSIRVEFGSWNL 146

BLAST of Cp4.1LG11g06050 vs. ExPASy TrEMBL
Match: A0A6J1KE05 (uncharacterized protein LOC111492379 OS=Cucurbita maxima OX=3661 GN=LOC111492379 PE=4 SV=1)

HSP 1 Score: 219 bits (559), Expect = 3.27e-71
Identity = 113/136 (83.09%), Postives = 117/136 (86.03%), Query Frame = 0

Query: 7   MSGKQLDQWGNGYQSYDDDLDDYSYSPPRKGIV-------------EDKQVSSYEQSWRT 66
           MSGKQLDQWG+GYQSYD DLDDYSYSPP +G V             EDKQVSSYEQSWRT
Sbjct: 1   MSGKQLDQWGSGYQSYDYDLDDYSYSPPSQGNVQVARMGYVGVVSAEDKQVSSYEQSWRT 60

Query: 67  HDRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQE 126
           HDRNR TG+YTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR+GYTEYQHQE
Sbjct: 61  HDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQHQE 120

Query: 127 RFRRVDFGSGGSSSSR 129
           RFRRVDFGSG SSS R
Sbjct: 121 RFRRVDFGSGSSSSIR 136

BLAST of Cp4.1LG11g06050 vs. ExPASy TrEMBL
Match: A0A6J1DXX9 (uncharacterized protein LOC111024099 OS=Momordica charantia OX=3673 GN=LOC111024099 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 1.12e-53
Identity = 94/142 (66.20%), Postives = 104/142 (73.24%), Query Frame = 0

Query: 7   MSGKQLDQWGNGYQSYDDDLDDYSYSPPRKG------------IVEDKQVSSYEQSWRTH 66
           MSGKQLDQW +G Q YD D DDYSY PP +G            + ED Q S YE+SWR H
Sbjct: 1   MSGKQLDQW-SGDQDYDYDSDDYSYDPPSQGYEIQPRCGYAVVVQEDNQASRYEKSWRCH 60

Query: 67  DRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQER 126
           DR+R TG Y TASTKEVASRGETFKERS+GRVG KDEFKTTST RVGDR+GYTEYQ QE 
Sbjct: 61  DRDRQTGNYKTASTKEVASRGETFKERSTGRVGYKDEFKTTSTCRVGDRSGYTEYQRQET 120

Query: 127 FRRVDFGSGGSSSSRIRVEFSS 136
           +RRVDFGS GS S   +  +SS
Sbjct: 121 YRRVDFGSSGSGSKGGQSNYSS 141

BLAST of Cp4.1LG11g06050 vs. ExPASy TrEMBL
Match: A0A5D3CHW8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00440 PE=4 SV=1)

HSP 1 Score: 162 bits (409), Expect = 2.02e-48
Identity = 87/128 (67.97%), Postives = 100/128 (78.12%), Query Frame = 0

Query: 10  KQLDQWGNGYQSYDDDL-DDYSYSPPRK--------GIVEDK-QVSSYEQSWRTHDRNRH 69
           KQ+ ++  GYQ+YD D  DDYSY+   +         +VED  Q+SSYEQSWRTHDRNR 
Sbjct: 3   KQVGRYDGGYQNYDYDYSDDYSYNQGSEVQATIGYLEVVEDNNQMSSYEQSWRTHDRNRQ 62

Query: 70  TGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQERFRRVD 127
           TG+YTT STK VASRGETFKERS+GRVG+KDEFKTTSTYRVGD++GYTEYQ QERFRRVD
Sbjct: 63  TGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVD 122

BLAST of Cp4.1LG11g06050 vs. ExPASy TrEMBL
Match: A0A5A7VGP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00800 PE=4 SV=1)

HSP 1 Score: 161 bits (408), Expect = 2.86e-48
Identity = 87/128 (67.97%), Postives = 100/128 (78.12%), Query Frame = 0

Query: 10  KQLDQWGNGYQSYDDDL-DDYSYSPPRK--------GIVEDK-QVSSYEQSWRTHDRNRH 69
           KQ+ ++  GYQ+YD D  DDYSY+   +         +VED  Q+SSYEQSWRTHDRNR 
Sbjct: 3   KQVGRYDGGYQNYDYDYSDDYSYNQGPEVQATIGYLEVVEDNNQMSSYEQSWRTHDRNRQ 62

Query: 70  TGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQERFRRVD 127
           TG+YTT STK VASRGETFKERS+GRVG+KDEFKTTSTYRVGD++GYTEYQ QERFRRVD
Sbjct: 63  TGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVD 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022929740.11.17e-7783.56uncharacterized protein LOC111436237 [Cucurbita moschata][more]
KAG7029798.11.61e-7583.22hypothetical protein SDJN02_08141, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6598857.12.68e-7483.80hypothetical protein SDJN03_08635, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022997473.16.76e-7183.09uncharacterized protein LOC111492379 [Cucurbita maxima][more]
XP_022157391.12.32e-5366.20uncharacterized protein LOC111024099 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1EV615.66e-7883.56uncharacterized protein LOC111436237 OS=Cucurbita moschata OX=3662 GN=LOC1114362... [more]
A0A6J1KE053.27e-7183.09uncharacterized protein LOC111492379 OS=Cucurbita maxima OX=3661 GN=LOC111492379... [more]
A0A6J1DXX91.12e-5366.20uncharacterized protein LOC111024099 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5D3CHW82.02e-4867.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGP12.86e-4867.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g06050.1Cp4.1LG11g06050.1mRNA