Cp4.1LG08g00090 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g00090
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	homeobox protein KNOX3
Location	Cp4.1LG08: 4610055 .. 4611141 (-)
RNA-Seq Expression	Cp4.1LG08g00090
Synteny	Cp4.1LG08g00090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGCATCTCCCAAATAAATATGCAACTCCCTTCTAATGCTTTAATCACCCTTCTTTCTACTTTCGGCTGCTTTACCAACCTCCAATGGACTCTGGGAACCATTCTACAGACCAACCACTTCGTGTCCAACTCCAACTAAAACACGAGGAAGAAGACGATGGCGTGGACGGAGATATGCTGCGTACGAGAATTTCTAGCCACCCCTTATATGGCCTCTTACTTGAGACTCATCTCAACTGTTTGAAGGTGAGTTTACTTATTTGTATTCATGATAAAATTAGTAGTCATTTGTTCTATGTGTGTGTTCAGGTTGGAGGAATTGGTGAATTGGACCGAGGTTATTTGGCTATGGATTTGATGGAACACCGAGAAAACGAGATCAGATGCTTGAACACGCTTAACCAATCGGAGCTAGATCGCTTCATGGTATGGTATTAACTACATATCATTCGGAATTCGAACTTTATAATAAGTATCATCACGTTTGAATCATTGGATGTCGAAAGATTAATAAACCGTTCAAAATAATTACATGTCATATACAAGTGCATTGTTGACACATGACTTAATCTTTGTACGATTTATTAGTCGTGAAACATTTTTAGGGAAAGTTACCAATCGTAGAGCATTTCTAAGAGAAGAATTGTTGAGTCGTCTGTCCTAAGTTTTATTTCAAAAGTCGAAAAGAATTGTGATTAAAGTATTTTTAGTACAAAGTGTCGAGGATTGTTGGGGAGTAGTCCCACATGGGGCTAATTTAGGGAATAATTATGGGTTTATAAGTAAGAAATACATTTTCATTGGTACGAGACCATTTGAGGGAAGCCCAAAACGAAGCCACGAGAGCTGTGTGCTCAAAGTGGACAAAAATGATATGGTGTGTTGAAACTGAAGGAGTTATGTGTGCAGGAAAGCTATTGCTATGCATTGAGCAAGCTGAAAGAAGCAATGGAGGAATCTCAGTTAAAATCGATGGCATTCATAAACAGCATGAACTCGCAACTAAGGGAGCTGACGGCGACGGGTGCGGCAGCCAAGAAACCCACCGCGGCCTCATCTTCTGCTGCTACTAGCGACACAAAGTGA

mRNA sequence

TGGGCATCTCCCAAATAAATATGCAACTCCCTTCTAATGCTTTAATCACCCTTCTTTCTACTTTCGGCTGCTTTACCAACCTCCAATGGACTCTGGGAACCATTCTACAGACCAACCACTTCGTGTCCAACTCCAACTAAAACACGAGGAAGAAGACGATGGCGTGGACGGAGATATGCTGCGTACGAGAATTTCTAGCCACCCCTTATATGGCCTCTTACTTGAGACTCATCTCAACTGTTTGAAGGTTGGAGGAATTGGTGAATTGGACCGAGCAATGGAGGAATCTCAGTTAAAATCGATGGCATTCATAAACAGCATGAACTCGCAACTAAGGGAGCTGACGGCGACGGGTGCGGCAGCCAAGAAACCCACCGCGGCCTCATCTTCTGCTGCTACTAGCGACACAAAGTGA

Coding sequence (CDS)

ATGGACTCTGGGAACCATTCTACAGACCAACCACTTCGTGTCCAACTCCAACTAAAACACGAGGAAGAAGACGATGGCGTGGACGGAGATATGCTGCGTACGAGAATTTCTAGCCACCCCTTATATGGCCTCTTACTTGAGACTCATCTCAACTGTTTGAAGGTTGGAGGAATTGGTGAATTGGACCGAGCAATGGAGGAATCTCAGTTAAAATCGATGGCATTCATAAACAGCATGAACTCGCAACTAAGGGAGCTGACGGCGACGGGTGCGGCAGCCAAGAAACCCACCGCGGCCTCATCTTCTGCTGCTACTAGCGACACAAAGTGA

Protein sequence

MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGELDRAMEESQLKSMAFINSMNSQLRELTATGAAAKKPTAASSSAATSDTK

Homology

[Close]

BLAST of Cp4.1LG08g00090 vs. ExPASy Swiss-Prot
Match: F4HXU3 (Protein KNATM OS=Arabidopsis thaliana OX=3702 GN=KNATM PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.2e-05
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 18 LKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKV 56
          LK E ++   + ++L+ RISSHPLYGLLL +HLNCLKV
Sbjct: 22 LKEEAQE---EEEILKKRISSHPLYGLLLHSHLNCLKV 56

[Close]

BLAST of Cp4.1LG08g00090 vs. NCBI nr
Match: XP_023539616.1 (homeobox protein KNOX3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189 bits (479), Expect = 2.84e-59
Identity = 109/151 (72.19%), Postives = 109/151 (72.19%), Query Frame = 0


Query: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGE 60
           MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGE
Sbjct: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGE 60

Query: 61  LDR------------------------------------------AMEESQLKSMAFINS 109
           LDR                                          AMEESQLKSMAFINS
Sbjct: 61  LDRGYLAMDLMEHRENEIRCLNTLNQSELDRFMESYCYALSKLKEAMEESQLKSMAFINS 120

[Close]

BLAST of Cp4.1LG08g00090 vs. NCBI nr
Match: KAG7028461.1 (Homeobox protein knotted-1-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185 bits (469), Expect = 9.47e-58
Identity = 107/151 (70.86%), Postives = 108/151 (71.52%), Query Frame = 0


Query: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGE 60
           MDSGNHSTDQPLRVQLQLKHEEEDDGVDG+MLR RISSHPLYGLLLETHLNCLKVGGIGE
Sbjct: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDGEMLRRRISSHPLYGLLLETHLNCLKVGGIGE 60

Query: 61  LDR------------------------------------------AMEESQLKSMAFINS 109
           LDR                                          AMEESQLKSMAFINS
Sbjct: 61  LDRGYLAMDLMEHRENEIRCLNTLNQSELDRFMESYCYALSKLKEAMEESQLKSMAFINS 120

[Close]

BLAST of Cp4.1LG08g00090 vs. NCBI nr
Match: KAG6596993.1 (Homeobox protein knotted-1-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184 bits (467), Expect = 1.91e-57
Identity = 107/151 (70.86%), Postives = 107/151 (70.86%), Query Frame = 0


Query: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGE 60
           MDSGNHSTDQPLRVQLQLKHEEEDDGVDGD LR RISSHPLYGLLLETHLNCLKVGGIGE
Sbjct: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDTLRRRISSHPLYGLLLETHLNCLKVGGIGE 60

Query: 61  LDR------------------------------------------AMEESQLKSMAFINS 109
           LDR                                          AMEESQLKSMAFINS
Sbjct: 61  LDRGYLAMDLMEHRENEIRCLNTLNQSELDRFMESYCYALSKLKEAMEESQLKSMAFINS 120

[Close]

BLAST of Cp4.1LG08g00090 vs. NCBI nr
Match: XP_022945492.1 (homeobox protein KNOX3 [Cucurbita moschata])

HSP 1 Score: 182 bits (462), Expect = 1.10e-56
Identity = 106/151 (70.20%), Postives = 106/151 (70.20%), Query Frame = 0


Query: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGE 60
           MDSGNHSTDQPLRVQLQLKHEEEDDGVDGD LR RISSHPLYGLLLETHLNCLKVGGIGE
Sbjct: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDTLRRRISSHPLYGLLLETHLNCLKVGGIGE 60

Query: 61  LDR------------------------------------------AMEESQLKSMAFINS 109
           LDR                                          AMEESQLKSMAFINS
Sbjct: 61  LDRGYLAMDLMEHRENEIRCLNTLNQSELDRFMESYCYALSKLKEAMEESQLKSMAFINS 120

[Close]

BLAST of Cp4.1LG08g00090 vs. NCBI nr
Match: XP_022974318.1 (homeobox protein KNOX3-like [Cucurbita maxima] >XP_022975290.1 homeobox protein KNOX3-like [Cucurbita maxima])

HSP 1 Score: 163 bits (412), Expect = 4.11e-49
Identity = 101/152 (66.45%), Postives = 103/152 (67.76%), Query Frame = 0


Query: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDG-DMLRTRISSHPLYGLLLETHLNCLKVGGIG 60
           MDSGNHSTDQPL    QLK EEEDDGVDG +MLR RISSHPLYGLLL+THLNCLKVGGIG
Sbjct: 1   MDSGNHSTDQPL----QLKQEEEDDGVDGGEMLRRRISSHPLYGLLLQTHLNCLKVGGIG 60

Query: 61  ELDR------------------------------------------AMEESQLKSMAFIN 109
           ELDR                                          AMEESQLKSMAFIN
Sbjct: 61  ELDRGYLAMDLMEHRENEIRCLNTLNQSELDRFMESYCYALSKLKEAMEESQLKSMAFIN 120

[Close]

BLAST of Cp4.1LG08g00090 vs. ExPASy TrEMBL
Match: A0A6J1G133 (homeobox protein KNOX3 OS=Cucurbita moschata OX=3662 GN=LOC111449708 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 5.34e-57
Identity = 106/151 (70.20%), Postives = 106/151 (70.20%), Query Frame = 0


Query: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGE 60
           MDSGNHSTDQPLRVQLQLKHEEEDDGVDGD LR RISSHPLYGLLLETHLNCLKVGGIGE
Sbjct: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDGDTLRRRISSHPLYGLLLETHLNCLKVGGIGE 60

Query: 61  LDR------------------------------------------AMEESQLKSMAFINS 109
           LDR                                          AMEESQLKSMAFINS
Sbjct: 61  LDRGYLAMDLMEHRENEIRCLNTLNQSELDRFMESYCYALSKLKEAMEESQLKSMAFINS 120

[Close]

BLAST of Cp4.1LG08g00090 vs. ExPASy TrEMBL
Match: A0A6J1IFV6 (homeobox protein KNOX3-like OS=Cucurbita maxima OX=3661 GN=LOC111472956 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 1.99e-49
Identity = 101/152 (66.45%), Postives = 103/152 (67.76%), Query Frame = 0


Query: 1   MDSGNHSTDQPLRVQLQLKHEEEDDGVDG-DMLRTRISSHPLYGLLLETHLNCLKVGGIG 60
           MDSGNHSTDQPL    QLK EEEDDGVDG +MLR RISSHPLYGLLL+THLNCLKVGGIG
Sbjct: 1   MDSGNHSTDQPL----QLKQEEEDDGVDGGEMLRRRISSHPLYGLLLQTHLNCLKVGGIG 60

Query: 61  ELDR------------------------------------------AMEESQLKSMAFIN 109
           ELDR                                          AMEESQLKSMAFIN
Sbjct: 61  ELDRGYLAMDLMEHRENEIRCLNTLNQSELDRFMESYCYALSKLKEAMEESQLKSMAFIN 120

[Close]

BLAST of Cp4.1LG08g00090 vs. ExPASy TrEMBL
Match: A0A6J1C8K6 (protein KNATM OS=Momordica charantia OX=3673 GN=LOC111008979 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 3.38e-28
Identity = 66/130 (50.77%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 15  QLQLKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGELDR----------- 74
           Q  L+ EEE +G +G++LR RISSHPLYGLL+ETHLNCLKVGGIG++DR           
Sbjct: 13  QKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKVGGIGDMDRGYLATDVIKQQ 72

Query: 75  -------------------------------AMEESQLKSMAFINSMNSQLRELTATGAA 102
                                          AMEESQ+KSMAFINSM+SQLRE+ AT AA
Sbjct: 73  DNNIRCLNTLNQSELDRFMETYCFALSKLKEAMEESQIKSMAFINSMHSQLREIPATSAA 132

[Close]

BLAST of Cp4.1LG08g00090 vs. ExPASy TrEMBL
Match: A0A444Z1E2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B05g075536 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.05e-17
Identity = 53/130 (40.77%), Postives = 69/130 (53.08%), Query Frame = 0


Query: 19  KHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGELDR--------------- 78
           + E++DD  + ++L+ RIS+HPLYGLL+E HL CLKVG I  LDR               
Sbjct: 45  EEEDQDDEKNNEILKRRISNHPLYGLLVEAHLECLKVGDISNLDRQLKIDPMQAMKQQNL 104

Query: 79  ------------------------AMEESQLKSMAFINSMNSQLRELTATGAAAKKPTAA 109
                                   AMEE Q KSMAFIN+M+SQLRELT    A   P+ A
Sbjct: 105 NMFSQSELDIFMEAYCMALGKLKEAMEEPQQKSMAFINNMHSQLRELTTKATAMPPPSEA 164

[Close]

BLAST of Cp4.1LG08g00090 vs. ExPASy TrEMBL
Match: A0A6P4DE57 (homeobox protein knotted-1-like 1 OS=Arachis duranensis OX=130453 GN=LOC107490543 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.05e-17
Identity = 53/130 (40.77%), Postives = 69/130 (53.08%), Query Frame = 0


Query: 19  KHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGELDR--------------- 78
           + E++DD  + ++L+ RIS+HPLYGLL+E HL CLKVG I  LDR               
Sbjct: 45  EEEDQDDEKNNEILKRRISNHPLYGLLVEAHLECLKVGDISNLDRQLKIDPIQAMKQQNL 104

Query: 79  ------------------------AMEESQLKSMAFINSMNSQLRELTATGAAAKKPTAA 109
                                   AMEE Q KSMAFIN+M+SQLRELT    A   P+ A
Sbjct: 105 NMFSQSELDIFMEAYCMALGKLKKAMEEPQQKSMAFINNMHSQLRELTTKATAMPPPSEA 164

[Close]

BLAST of Cp4.1LG08g00090 vs. TAIR 10
Match: AT1G14760.3 (KNOX Arabidopsis thaliana meinox )

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 30/72 (41.67%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 18 LKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLK---VGGIGELDRAMEESQLKSMA 77
          LK E ++   + ++L+ RISSHPLYGLLL +HLNCLK      + EL  AME+   ++  
Sbjct: 22 LKEEAQE---EEEILKKRISSHPLYGLLLHSHLNCLKEAYCSTLRELKEAMEKPLTETHR 81

Query: 78 FINSMNSQLREL 87
          F++++ +QL ++
Sbjct: 82 FVDAVYTQLNDI 90

[Close]

BLAST of Cp4.1LG08g00090 vs. TAIR 10
Match: AT1G14760.1 (KNOX Arabidopsis thaliana meinox )

HSP 1 Score: 48.1 bits (113), Expect = 5.1e-06
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 18 LKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKV 56
          LK E ++   + ++L+ RISSHPLYGLLL +HLNCLKV
Sbjct: 22 LKEEAQE---EEEILKKRISSHPLYGLLLHSHLNCLKV 56

[Close]

BLAST of Cp4.1LG08g00090 vs. TAIR 10
Match: AT1G14760.2 (KNOX Arabidopsis thaliana meinox )

HSP 1 Score: 48.1 bits (113), Expect = 5.1e-06
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 18 LKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKV 56
          LK E ++   + ++L+ RISSHPLYGLLL +HLNCLKV
Sbjct: 22 LKEEAQE---EEEILKKRISSHPLYGLLLHSHLNCLKV 56

[Close]

BLAST of Cp4.1LG08g00090 vs. TAIR 10
Match: AT1G70510.1 (KNOTTED-like from Arabidopsis thaliana 2 )

HSP 1 Score: 42.0 bits (97), Expect = 3.7e-04
Identity = 21/72 (29.17%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 4   GNHSTDQPLRVQLQLKHEEEDDGVDGDMLRTRISSHPLYGLLLETHLNCLKVGGIGELDR 63
           G+      L  +L  +  + +D     +++++I+SHPLY  LL+T+++C KVG   E+  
Sbjct: 41  GSDELATALSSELLPRIRKAEDNFSLSVIKSKIASHPLYPRLLQTYIDCQKVGAPMEIAC 100

Query: 64  AMEESQLKSMAF 76
            +EE Q ++  +
Sbjct: 101 ILEEIQRENHVY 112

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g00090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HXU3	7.2e-05	60.53	Protein KNATM OS=Arabidopsis thaliana OX=3702 GN=KNATM PE=1 SV=1	[more]

BLAST of Cp4.1LG08g00090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539616.1	2.84e-59	72.19	homeobox protein KNOX3 [Cucurbita pepo subsp. pepo]	[more]
KAG7028461.1	9.47e-58	70.86	Homeobox protein knotted-1-like 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596993.1	1.91e-57	70.86	Homeobox protein knotted-1-like 2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022945492.1	1.10e-56	70.20	homeobox protein KNOX3 [Cucurbita moschata]	[more]
XP_022974318.1	4.11e-49	66.45	homeobox protein KNOX3-like [Cucurbita maxima] >XP_022975290.1 homeobox protein ...	[more]

BLAST of Cp4.1LG08g00090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G133	5.34e-57	70.20	homeobox protein KNOX3 OS=Cucurbita moschata OX=3662 GN=LOC111449708 PE=4 SV=1	[more]
A0A6J1IFV6	1.99e-49	66.45	homeobox protein KNOX3-like OS=Cucurbita maxima OX=3661 GN=LOC111472956 PE=4 SV=...	[more]
A0A6J1C8K6	3.38e-28	50.77	protein KNATM OS=Momordica charantia OX=3673 GN=LOC111008979 PE=4 SV=1	[more]
A0A444Z1E2	1.05e-17	40.77	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B05g075536 PE=4 SV=1	[more]
A0A6P4DE57	1.05e-17	40.77	homeobox protein knotted-1-like 1 OS=Arachis duranensis OX=130453 GN=LOC10749054...	[more]

BLAST of Cp4.1LG08g00090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14760.3	1.9e-08	41.67	KNOX Arabidopsis thaliana meinox	[more]
AT1G14760.1	5.1e-06	60.53	KNOX Arabidopsis thaliana meinox	[more]
AT1G14760.2	5.1e-06	60.53	KNOX Arabidopsis thaliana meinox	[more]
AT1G70510.1	3.7e-04	29.17	KNOTTED-like from Arabidopsis thaliana 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005540	KNOX1	SMART	SM01255	KNOX1_2	coord: 30..74 e-value: 1.9E-9 score: 47.4
IPR005540	KNOX1	PFAM	PF03790	KNOX1	coord: 33..60 e-value: 3.9E-8 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g00090.1	Cp4.1LG08g00090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding