Cp4.1LG04g00470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Position :
0
Zoom :
x 1
ATGGTGCTGAAAGCAGAGGATTGTAGCCCATACTTCATGTTGCATTATAAAAGGAAAACCTGGCTTTGGCATCGCACTTTAGATCTTTCCAGAACTTCATAAATCTTCGAGGATCTGCTTCTCCATTTTCTCTCTAGCCCTAAAATTACCAGAGCCATGGTGATGATTGATGACTATGGTTATGGCTCAATAGATTTTGTTTTTATTGTACACGAGAAACGAGACAATGAGCAGCAGAAATAGCCGCACCATCTATGTTGGTAACCTTCCTGGAGATATTCGTTTGAGAGAAGTAGAAGATCTGTTCTACAAGTTTGAAGATGTTCGTGATGCTGAAGATGCAATTTATGGCCGAGATGGATACAAGTTTGATGGATGTCGTTTACGGGTGGAATTTGCGCATGGTGGAAGGGGGGGACATTCCTCTTCAATAGATCATTATAGTCGTAGTGGGAGTAGCCGTGGTGGTGTTTCTCGGCGAACTGACTATCGTGTTTTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAAGTTTTCCGTGATCGTGGTGGGATGGCAGGAATAGTAGATTATACAAACTATGATGACATGAAATATGCTATACGGAAACTTGATGATTCTGAATTTCGAAATGCCTTTTCTCGTGCGTATGTACGGGTGAAGGAGTATGACTCTAGGCGTAGCTATTCCAGAAGTCCTTCCCGTGATTCTAGACAAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCTTATGGGGAAAGAGGTCGTAGCCGGAGCAGAAGCCGGAGTCGAAGTAGAAGTCAATCTCGAAGCCTTATACGTAGTCATAGCCATAGTCATAGTGGCAGGAGCACAAGTTTTTCTCCAAGGCTGAAGCACTCTCGTCGGTCGCCGTCAATTTCTGAACAATCCCAGTCAAAGTCTCTTTCAAGGTCAAGGTCGAGATCCAGATCAGGATCACCAGTTTCCTCTCGTCATGAGAGGAAAATTCAGAATCGGAGCAGATCTCGTTCCAAGTCCAGAAGCCTGTCCAGATCTCTTTCACCTGAAGGGAGATCTGATCGAAGCCGAAGTCGAAGCCAATCTGTTGATTCCAGGGATCGATATTCAGAATAGATCATATTGTTATTGAGATGGGATTGTAAAGCGTAGAAGAGAGATTAGCGTTGGGTATATTTGGAGGGCTGGATTTAATGTGTGTGTGTTATGGGTGACTAGTATTGACCCTACCCATGTTTCAGTGTATTTTGACCCTACCCATGTTTCAGTGTATTTTGACCCTACCCATGTTTCAGTGTATTTTGTACGTTGGTACTTGCTTGGTTATATTTCACTTCAGAATTACCAAATGAATTTCTCGTGTCAAAATTTTAATAAACAATTTACTTTCTTATCGTCGTCCTTTTTTAAGTTTAGGAAGAAGTCCCAATTTCTTCCTCAAATGAATGGATCATCTTTGGGACCTTCCAATGAACGGTCCATACTTCATGGCCCTATTACGCTAATAAGATCAATGCATCAGCTGCATTGCATGGACAGTCTT200400600800100012001400Expect = 0.015 / Score = 22.7Expect = 1.3E-6 / Score = 37.9Expect = 7.1E-10 / Score = 38.6Score = 9.746194Expect = 2.3E-6 / Score = 29.6Expect = 6.1E-22 / Score = 79.3Score = Score = Score = Score = Score = Score = Score = Score = Score = Expect = 3.55031E-44 / Score = 143.801Score = SequenceSM00360PF00076PS50102G3DSA:3.30.70.330G3DSA:3.30.70.330mobidb-litemobidb-litemobidb-litemobidb-litemobidb-litePTHR23147:SF198PTHR23147cd12602SSF54928
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..56
e-value: 0.015
score: 22.7
coord: 89..160
e-value: 1.3E-6
score: 37.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 90..152
e-value: 7.1E-10
score: 38.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 88..166
score: 9.746194
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 27..88
e-value: 2.3E-6
score: 29.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 89..165
e-value: 6.1E-22
score: 79.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..312
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 289..312
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..218
NoneNo IPR availablePANTHERPTHR23147:SF198PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEINcoord: 29..285
coord: 2..30
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 29..285
coord: 2..30
NoneNo IPR availableCDDcd12602RRM2_SF2_plant_likecoord: 88..163
e-value: 3.55031E-44
score: 143.801
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 5..155