Cp4.1LG04g00470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g00470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	serine/arginine-rich splicing factor SR30-like
Location	Cp4.1LG04: 1659233 .. 1664215 (+)
RNA-Seq Expression	Cp4.1LG04g00470
Synteny	Cp4.1LG04g00470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTGAAAGCAGAGGATTGTAGCCCATACTTCATGTTGCATTATAAAAGGAAAACCTGGCTTTGGCATCGCACTTTAGATCTTTCCAGAACTTCATAAATCTTCGAGGATCTGCTTCTCCATTTTCTCTCTAGCCCTAAAATTACCAGGTATAGATTTCTCTCTTCTAATTTTCATTCTCTTTTCGAATTGTTGATTTTGATTCTTGATTCTTGATTGAAGAAAGAACAAGAAAGAAAGCAAAAAGATCTCGTAATTTCGCGTGTTGATTTTCTTTTTCATTTCGATTTTGTGTTAATTTTGATAGCCATGGTGATGATTGATGACTATGGTTATGGCTCAATAGGTTATTCTCCTCCATCCTTCTTTTAATCTATGCGATGTTGTTTCATTTTATGATGCAATTTTTATTAACATTTATTCTTATCCTTTTCAAGATTTTGTTTTTATTGTACACGAGAAACGAGACAATGAGCAGCAGAAATAGCCGCACCATCTATGTTGGTAACCTTCCTGGAGATATTCGTTTGAGAGAAGTAGAAGATCTGTTCTACAAGGTTTGATTTCCTCAAATAATTATCTTTATATAATCCTACTTGTTTTGGTGAAATTTTAGTGCTTAAAACCGAAACCCTAAACCGGGTCGTTTGAAACACGTGCTAAAAAAATCCAAGNCCCCCCCCCCGACTAATTCTAGTTTGATTGCAGTATGGACCGATTGTCGACATTGATTTGAAGATTCCCCCACGCCCACCGGGCTATGCTTTTGTGGAGGTGAGGTTAAATCTTGACGCTTTTGGAACCCCGTCTCTCTGGCAGGAACATTTTTCATCGGAGTCCCTTCAAATTGGTGTCTTATCGTTTTGGGTGTTTAACGAATTTAAATAGTTGTACTGAGCTGTCGGTGATCCTTAATGGAAAACCTTTATTGTCTTCTTATTTTTTCAGTTTGAAGATGTTCGTGATGCTGAAGATGCAATTTATGGCCGAGATGGATACAAGTTTGATGGATGTCGTTTACGGGTAATTTGCAACACACACCTGCTGAAATTATTCTCCAATGATGTCTTATCCACGTATCGAAATATGATGTTGCGATCCTTGTTTTGTAGGTGGAATTTGCGCATGGTGGAAGGGGGGGACATTCCTCTTCAATAGATCATTATAGTCGTAGTGGGAGTAGCCGTGGTGGTGTTTCTCGGCGAACTGACTATCGTGGTATGTATTTTATTTACTTTTACTGTCAAAATGTGATGATACTGTTGTCATGATATTTTGTTTGTACAGTTTTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAGGTAAGCACAATTTTTCTATTTCAGGAAATAACCTACTATTATGCTAAGTTCTCCATTTCTTTGTTCGATCATATCCACCTTGTTAAATAGAAGCAAAATACATGGCTTCACTCTCTTCTACTAATTGGTAGTTTGTTTTTTGAATTTAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAAGTTTTCCGTGATCGTGGTGGTATGTCATGTTGACTTACTTGTCCTCCTATTCTCTCTAACATATGGCCCTGTGCAAGTTTCATTTGAACTCGTGGTATTATTATTATTTTTCTTTTGCTGGAATGGAATGCACGTTTAACCTTTAGAAATCCTCATGGGTTGATAATAGTATTCCAATAGCAACCTTCATTTTTTCTTTCTCAAGAAAAGATCATTCTTATTTCTAAACACCTTCCAGCCTTGATTAAGATGAGGTCAGTACGGGGTGTCCTGATTGGTTCTATCTCAAAAAAAGGAAAAGAAAAAGAAAAAAGAAAAAGGAAATAAAGGAAAAAGAAAAAAAGGATGTGAAATCTAGAATAACCACTCCACGACTAGTTTAGTTGTAAGGTCGATTGATCTGAATTCCACGACTCTCTTAAGTACATGGGGCCACAACTAAAAGCTCTTTTTTTTCATACACGTTACTCAAATCTTGTGGTCAAATCTGGATTCTCTTGAAACTGCTTTAGTATTTTGGCCATTCCATCAAGTTACTGATATCCAATTTTTATTTTTACCTCCTGCTATTGAGATGGTCAAAATAGAAATTGGACAACAATGACTTGATGGATGGCGTAACTTTTATTTTTACTTCCTGCTATTGAGATGGTAGATCCTTTTTTCATTATTTATTTATTTTTATCAATTATATTTAATGAGGTCTATAATTGTGTTTTGTTAAAAAAAAAAAAGTCTTCAACACTTCATAAGGGATTTGTTTCTTGAAATATGTGCAGGGATGGCAGGAATAGTAGATTATACAAACTATGATGACATGAAATATGCTGTAAGTTGCTTTTTAGACGGTTTTACTTGTAATGTCTTTTCTGGAAGATTTGCTTCATGTTTAATGGTGTCAGTCTTTGTTTTATATTCTGCGTTTGTGTGGTAATATATGTTATTTATGTTTGTCATTTGTAATCTGGCTTATTTCTGCAGATACGGAAACTTGATGATTCTGAATTTCGAAATGCCTTTTCTCGTGCGTATGTACGGGTATGTGGATTGGACGCTTATTTATTGTGCTAAATTCTGTTTTGTTACTAATAATTTGTGTAACAATACGCACAGGTGAAGGAGTATGACTCTAGGCGTAGCTATTCCAGAAGTCCTTCCCGTGATTCTAGACAAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCTTATGGGGAAAGAGGTCGTAGCCGGAGCAGAAGCCGGAGTCGAAGTAGAAGTCAATCTCGAAGCCTTATACGTAGTCATAGCCATAGTCATAGTGGCAGGAGCACAAGGTATGTTTTGGTTTGCTTGCAAAGTAAAGATTAAAATGATGAATCATGAAAAATTAAAATGGCACAATATTTTGTTTTGTAGTTTTTCTCCAAGGCTGAAGCACTCTCGTCGGTCGCCGTCAATTTCTGAACAATCCCAGTCAAAGTCTCTTTCAAGGTTTGCGGAATTCCCTTATCATTATTATTTAATCTTCCTTTCCTAAGAACAGTATCTGAATTCACTGTTGCTTTGGTGCTGCTATTCTTTTATAAAATGGATGTCTAGTCTAGGCTTGTGTTTTCCCAGTGCTGGTTCCCATATCTCTTTAATCTGGACAGCTTTATATGTTGACATCTCTACAAATATGTTAAAGTTGTGCTTGCTTACTGCCTGTTGTATGGGACCACCGATTTGTGGTCATCAAGTCTCTTCATGATGACATAAGGGCATTTGTTGTTTCTTGTTGGAAAATGTGTGGTGGCACTTTCTGTTTTTTTATTTTTTTCTTGAAATGTTCTCAGAATCAGAAATAATAAGTGTTCTTAAGTCACTTAAGTCAGCTCTTCTTGAGTAAATAAGTGGGAAAAGGAAATAAGAAATGGAAGGAACACATAAAAGCAAAGATAGGTGGCAACCAATGGGGTTCAGGAGAATCTGCTTGTAGACATTGTTTTGATGATGCAAGGATTCTTGAATTTCATACACTTCATTTGCAATTTTCCTGATTTATGGTCGCTATTTTTTCCCCAAAACTTTTTTCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTAAAGAAATATTTTTACTTTTCCTTTGGGTATGCTCGGGGTTAACAAAACAGAAGCTTATTGGTTTGGGCAGTCATCATTGTTTGTTTATGTTTTTTGCTAGATATGGGCTTTTGCGGAATAATTGAGACTTGTTAGGGGCTTGAGAGATGTGGTGCTCAATGTTCTTCTTTCAACTCTTTGGTTGTTGAGGTAATACAGTTTTGTTGATGAGCACCCAGACACATCCTCAATGATAATGATTCTTTCCCTTCCCTTATATGCATGTTTTCCCAGTTACTGCCAACACAATGGAAAAGCTCGTTGAGTTGCAATACTATTGTTTGCTACGTTGAGAATTAGTCCTCTGTACATCGGTTCTACATTAGTTTGGGTTATAGTTTGAATGTTCTTCCCTCTCACTGTTTTGCTGCCTGTGTTTATTTGCTTTCATTCTTACTTATAATCAACTCTTGATGGGCTGGGATGAAAGAATTGAGCTTGGAAACCAGTCTTCTATGTATTTATTGTTGTTGAGCTTGGAAACAAATTCTCTTTGGATAATCTTATGATTCTTTTGGTTATTGATTCCAGGTCAAGGTCGAGATCCAGATCAGGATCACCAGTTTCCTCTGTAAGCAGCCTTCCCCTTTCCTGGATTTCCTTGTGTCTATGGATAAGGTTTCACTTCTGGTTCTCATTGTTTTGTTTATTGCTGCAGCGTCATGAGAGGAAAATTCAGAATCGGAGCAGATCTCGTTCCAAGTCCAGAAGCCTGTCCAGATCTCTTTCACCTGAAGTAATATCCTGATTCAGAACATGTGCATATTTCTCTAAACTCAGATAGCATCTGTTCCCGAAGTTTTGTATTCATGATTTGATTTTTGACTTGAACAGGGGAGATCTGATCGAAGCCGAAGTCGAAGCCAATCTGTTGATTCCAGGGATCGATATTCAGAATAGATCATATTGTTATTGAGATGGGATTGTAAAGCGTAGAAGAGAGATTAGCGTTGGGTATATTTGGAGGGCTGGATTTAATGTGTGTGTGTTATGGGTGACTAGTATTGACCCTACCCATGTTTCAGTGTATTTTGACCCTACCCATGTTTCAGTGTATTTTGACCCTACCCATGTTTCAGTGTATTTTGTACGTTGGTACTTGCTTGGTTATATTTCACTTCAGAATTACCAAATGAATTTCTCGTGTCAAAATTTTAATAAACAATTTACTTTCTTATCGTCGTCCTTTTTTAAGTTTAGGAAGAAGTCCCAATTTCTTCCTCAAATGAATGGATCATCTTTGGGACCTTCCAATGAACGGTCCATACTTCATGGCCCTATTACGCTAATAAGATCAATGCATCAGCTGCATTGCATGGACAGTCTT

mRNA sequence

ATGGTGCTGAAAGCAGAGGATTGTAGCCCATACTTCATGTTGCATTATAAAAGGAAAACCTGGCTTTGGCATCGCACTTTAGATCTTTCCAGAACTTCATAAATCTTCGAGGATCTGCTTCTCCATTTTCTCTCTAGCCCTAAAATTACCAGAGCCATGGTGATGATTGATGACTATGGTTATGGCTCAATAGATTTTGTTTTTATTGTACACGAGAAACGAGACAATGAGCAGCAGAAATAGCCGCACCATCTATGTTGGTAACCTTCCTGGAGATATTCGTTTGAGAGAAGTAGAAGATCTGTTCTACAAGTTTGAAGATGTTCGTGATGCTGAAGATGCAATTTATGGCCGAGATGGATACAAGTTTGATGGATGTCGTTTACGGGTGGAATTTGCGCATGGTGGAAGGGGGGGACATTCCTCTTCAATAGATCATTATAGTCGTAGTGGGAGTAGCCGTGGTGGTGTTTCTCGGCGAACTGACTATCGTGTTTTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAAGTTTTCCGTGATCGTGGTGGGATGGCAGGAATAGTAGATTATACAAACTATGATGACATGAAATATGCTATACGGAAACTTGATGATTCTGAATTTCGAAATGCCTTTTCTCGTGCGTATGTACGGGTGAAGGAGTATGACTCTAGGCGTAGCTATTCCAGAAGTCCTTCCCGTGATTCTAGACAAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCTTATGGGGAAAGAGGTCGTAGCCGGAGCAGAAGCCGGAGTCGAAGTAGAAGTCAATCTCGAAGCCTTATACGTAGTCATAGCCATAGTCATAGTGGCAGGAGCACAAGTTTTTCTCCAAGGCTGAAGCACTCTCGTCGGTCGCCGTCAATTTCTGAACAATCCCAGTCAAAGTCTCTTTCAAGGTCAAGGTCGAGATCCAGATCAGGATCACCAGTTTCCTCTCGTCATGAGAGGAAAATTCAGAATCGGAGCAGATCTCGTTCCAAGTCCAGAAGCCTGTCCAGATCTCTTTCACCTGAAGGGAGATCTGATCGAAGCCGAAGTCGAAGCCAATCTGTTGATTCCAGGGATCGATATTCAGAATAGATCATATTGTTATTGAGATGGGATTGTAAAGCGTAGAAGAGAGATTAGCGTTGGGTATATTTGGAGGGCTGGATTTAATGTGTGTGTGTTATGGGTGACTAGTATTGACCCTACCCATGTTTCAGTGTATTTTGACCCTACCCATGTTTCAGTGTATTTTGACCCTACCCATGTTTCAGTGTATTTTGTACGTTGGTACTTGCTTGGTTATATTTCACTTCAGAATTACCAAATGAATTTCTCGTGTCAAAATTTTAATAAACAATTTACTTTCTTATCGTCGTCCTTTTTTAAGTTTAGGAAGAAGTCCCAATTTCTTCCTCAAATGAATGGATCATCTTTGGGACCTTCCAATGAACGGTCCATACTTCATGGCCCTATTACGCTAATAAGATCAATGCATCAGCTGCATTGCATGGACAGTCTT

Coding sequence (CDS)

ATGAGCAGCAGAAATAGCCGCACCATCTATGTTGGTAACCTTCCTGGAGATATTCGTTTGAGAGAAGTAGAAGATCTGTTCTACAAGTTTGAAGATGTTCGTGATGCTGAAGATGCAATTTATGGCCGAGATGGATACAAGTTTGATGGATGTCGTTTACGGGTGGAATTTGCGCATGGTGGAAGGGGGGGACATTCCTCTTCAATAGATCATTATAGTCGTAGTGGGAGTAGCCGTGGTGGTGTTTCTCGGCGAACTGACTATCGTGTTTTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAAGTTTTCCGTGATCGTGGTGGGATGGCAGGAATAGTAGATTATACAAACTATGATGACATGAAATATGCTATACGGAAACTTGATGATTCTGAATTTCGAAATGCCTTTTCTCGTGCGTATGTACGGGTGAAGGAGTATGACTCTAGGCGTAGCTATTCCAGAAGTCCTTCCCGTGATTCTAGACAAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCTTATGGGGAAAGAGGTCGTAGCCGGAGCAGAAGCCGGAGTCGAAGTAGAAGTCAATCTCGAAGCCTTATACGTAGTCATAGCCATAGTCATAGTGGCAGGAGCACAAGTTTTTCTCCAAGGCTGAAGCACTCTCGTCGGTCGCCGTCAATTTCTGAACAATCCCAGTCAAAGTCTCTTTCAAGGTCAAGGTCGAGATCCAGATCAGGATCACCAGTTTCCTCTCGTCATGAGAGGAAAATTCAGAATCGGAGCAGATCTCGTTCCAAGTCCAGAAGCCTGTCCAGATCTCTTTCACCTGAAGGGAGATCTGATCGAAGCCGAAGTCGAAGCCAATCTGTTGATTCCAGGGATCGATATTCAGAATAG

Protein sequence

MSSRNSRTIYVGNLPGDIRLREVEDLFYKFEDVRDAEDAIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSRSKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE

Homology

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BLAST of Cp4.1LG04g00470 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.8e-70
Identity = 175/287 (60.98%), Postives = 197/287 (68.64%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYK                      FED RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGY FDGCRLRVE AHGGR   S S+D YS S S+    SRR+DYRVLVTGLPPS
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGR-RFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMR+AGDVCFSEVF DR GM+G+VDY+NYDDMKYAIRKLD +EFRNAFS AY
Sbjct: 121 ASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           +RV+EY+S RS SRSP  D  +S  SRS SR P          S+SRS S +RS+     
Sbjct: 181 IRVREYES-RSVSRSP--DDSKSYRSRSRSRGP-----SCSYSSKSRSVSPARSI----- 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSI-SEQSQSKSLSRSRSRSRSGSPVS 265
                     SPR +   RS S+ S  S+S+S S+SRSRSRS SPVS
Sbjct: 241 ----------SPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPVS 263

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BLAST of Cp4.1LG04g00470 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 9.4e-66
Identity = 174/324 (53.70%), Postives = 202/324 (62.35%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MS R SR+IYVGNLPGDIR  E+ED+FYK                      FE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGG--------RGGHSSSIDHY----SRSGSSRGGVSRRT 120
           AI GRDGY  DGCRLRVE AHGG        RGG+      Y       GS+R GVSR +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLD 180
           ++RV+V GLP SASWQDLKDHMR+AGDVCF+EV RD  G  G+VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRS 240
           D+EFRN ++R ++RVK+Y+S RS SRSPSR       SRS SRS      RSRSR R RS
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSR-------SRSRSRS------RSRSRGRGRS 240

Query: 241 RSQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSR 291
            S+SRSL RS S     +  S SPR                +SLSRS S+SRS SP   +
Sbjct: 241 HSRSRSLSRSKS---PRKDLSKSPR----------------RSLSRSISKSRSPSPDKKK 292

[Close]

BLAST of Cp4.1LG04g00470 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.1e-65
Identity = 181/334 (54.19%), Postives = 207/334 (61.98%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRT+YVGNLPGDIR REVEDLF K                      F+D RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRG-----------GVSRRTD 120
           AI+GRDGY FDG RLRVE AHGGR   SS     S +G  RG           G SRR++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR--RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 120

Query: 121 YRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDD 180
           +RVLVTGLP SASWQDLKDHMR+ GDVCFS+V+RD  G  G+VDYT Y+DMKYA++KLDD
Sbjct: 121 FRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 180

Query: 181 SEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSR 240
           +EFRNAFS  YVRV+EYDSR+  SRSPSR      YS+S SRS    RGRS SRSRSRSR
Sbjct: 181 TEFRNAFSNGYVRVREYDSRKD-SRSPSRG---RSYSKSRSRS----RGRSVSRSRSRSR 240

Query: 241 SQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRS---RSRSRSGSPVS 299
           S+SR                 SP+ K SRRSP       +KS SRS   RS+SRS SP  
Sbjct: 241 SRSR-----------------SPKAKSSRRSP-------AKSTSRSPGPRSKSRSPSP-- 288

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BLAST of Cp4.1LG04g00470 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 9.7e-63
Identity = 164/291 (56.36%), Postives = 183/291 (62.89%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR REVEDLF K                      FED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYS------RSGSSRG----GVSRRTDY 120
           AIYGRDGY FDG  LRVE AHGGR     +   YS      R G   G    G SRR++Y
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDS 180
           RV+V+GLP SASWQDLKDHMR+ G+VCFS+VFRD  G  GIVDYT+Y+DMKYA   LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRS 240
           EFRNAFS  YVRV+EYDSRR               SRSPS      RGRS S+SRSR RS
Sbjct: 181 EFRNAFSHEYVRVREYDSRRD--------------SRSPS------RGRSYSKSRSRGRS 240

Query: 241 QSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRS 260
            SRS  RS S     RS S SP+ K  RRSP+ S     +S SRS+SRS S
Sbjct: 241 PSRSRSRSRS-----RSKSRSPKAKSLRRSPAKSTSRSPRSRSRSKSRSLS 263

[Close]

BLAST of Cp4.1LG04g00470 vs. ExPASy Swiss-Prot
Match: Q9NEW6 (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=6239 GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 186.8 bits (473), Expect = 3.7e-46
Identity = 125/254 (49.21%), Postives = 151/254 (59.45%), Query Frame = 0


Query: 9   IYVGNLPGDIRLREVEDLFYK---------------------FEDVRDAEDAIYGRDGYK 68
           +YVGNLPGD+R +EVED+F+K                     FED RDAEDA+  RDGY+
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70

Query: 69  FDGCRLRVEFAH-------GGR-----GGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGL 128
           FDG R+RVEF         GGR     G H        R G   GG  RRT YRV+V GL
Sbjct: 71  FDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGL 130

Query: 129 PPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFR-NAF 188
           PP+ SWQDLKDHMR AGDVC+++V RD     G+V++T Y+D+KYA+RKLDD++FR +  
Sbjct: 131 PPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDDTKFRSHEG 190

Query: 189 SRAYVRVKEYDSR----------RSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRS 219
             AY+RV+E +S           RS SRSP  + R      SP  SP   R RSRSRSRS
Sbjct: 191 ETAYIRVREDNSSGGGSGGGGRDRSRSRSPRAERR-----ASPKYSPRRSRSRSRSRSRS 250

[Close]

BLAST of Cp4.1LG04g00470 vs. NCBI nr
Match: XP_023530260.1 (serine/arginine-rich splicing factor SR30-like [Cucurbita pepo subsp. pepo] >XP_023530261.1 serine/arginine-rich splicing factor SR30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 563 bits (1450), Expect = 7.51e-201
Identity = 312/334 (93.41%), Postives = 312/334 (93.41%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                      FEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS
Sbjct: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSR 300
           HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSR
Sbjct: 241 HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSR 300

Query: 301 SKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE 312
           SKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE
Sbjct: 301 SKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE 334

[Close]

BLAST of Cp4.1LG04g00470 vs. NCBI nr
Match: KAG6588492.1 (Serine/arginine-rich splicing factor SR30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 540 bits (1391), Expect = 7.58e-192
Identity = 305/336 (90.77%), Postives = 308/336 (91.67%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                      FED+RDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDIRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           VRVKEYDSRRSYSRSPSRDSR+SDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSL RSHS
Sbjct: 181 VRVKEYDSRRSYSRSPSRDSRRSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHS 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSR 300
           HSHSGRSTS SPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSR ERKIQNRSRSR
Sbjct: 241 HSHSGRSTSLSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSR 300

Query: 301 SKSRSLSRSLSPEGRSDRSRSRS--QSVDSRDRYSE 312
           SKSRSLSRSLSP+GRSDRSRSRS  QSVDSRDRYSE
Sbjct: 301 SKSRSLSRSLSPDGRSDRSRSRSRSQSVDSRDRYSE 335

[Close]

BLAST of Cp4.1LG04g00470 vs. NCBI nr
Match: XP_022928780.1 (serine/arginine-rich splicing factor SR30-like [Cucurbita moschata] >XP_022928787.1 serine/arginine-rich splicing factor SR30-like [Cucurbita moschata])

HSP 1 Score: 533 bits (1374), Expect = 2.94e-189
Identity = 301/336 (89.58%), Postives = 307/336 (91.37%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                      FED+RDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDIRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           VRVKEYDSRRSYSRSPSRDSR+SDYSRSPSRSP+GERGRS+SRSRSRSRSQSRSL RSHS
Sbjct: 181 VRVKEYDSRRSYSRSPSRDSRRSDYSRSPSRSPHGERGRSQSRSRSRSRSQSRSLRRSHS 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSR 300
           HSHSGRSTS SPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSR ERK QNRSRSR
Sbjct: 241 HSHSGRSTSLSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRRERKFQNRSRSR 300

Query: 301 SKSRSLSRSLSPEGRSDRSRSRSQS--VDSRDRYSE 312
           SKSRSLSRSLSP+GRSDRSRSRS+S  VDSRDRYSE
Sbjct: 301 SKSRSLSRSLSPDGRSDRSRSRSRSRSVDSRDRYSE 335

[Close]

BLAST of Cp4.1LG04g00470 vs. NCBI nr
Match: XP_022969758.1 (serine/arginine-rich splicing factor SR30-like [Cucurbita maxima] >XP_022969766.1 serine/arginine-rich splicing factor SR30-like [Cucurbita maxima])

HSP 1 Score: 532 bits (1370), Expect = 1.29e-188
Identity = 303/338 (89.64%), Postives = 306/338 (90.53%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                      FEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRS----RSRSRSRSRSQSRSLI 240
           VRVKEYDSRRSYSRSPSRDSR+SDYSRSPS SPYGERGRS    RSRSRSRSRSQSRSL 
Sbjct: 181 VRVKEYDSRRSYSRSPSRDSRRSDYSRSPSCSPYGERGRSQSRSRSRSRSRSRSQSRSLR 240

Query: 241 RSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNR 300
           RS SHSHSGRSTS SPRLKHSR+SPSISEQSQSKSLSRSRSRSRSGSPVSSR ERKIQNR
Sbjct: 241 RSRSHSHSGRSTSLSPRLKHSRQSPSISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNR 300

Query: 301 SRSRSKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE 312
           SRSRSKSRSLSRSLSP+GRSDRSRSRSQSVDSRDRYSE
Sbjct: 301 SRSRSKSRSLSRSLSPDGRSDRSRSRSQSVDSRDRYSE 337

[Close]

BLAST of Cp4.1LG04g00470 vs. NCBI nr
Match: KAG7022321.1 (Serine/arginine-rich splicing factor SR30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 526 bits (1355), Expect = 8.49e-186
Identity = 305/372 (81.99%), Postives = 308/372 (82.80%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK------------------------------- 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                               
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60

Query: 61  ---------------------------FEDVRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED+RDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 GGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRD 180
           G HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRD
Sbjct: 121 G-HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRD 180

Query: 181 RGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSD 240
           RGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSR+SD
Sbjct: 181 RGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSD 240

Query: 241 YSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSIS 300
           YSRSPSRSPYGERGRSRSRSRSRSRSQSRSL RSHSHSHSGRSTS SPRLKHSRRSPSIS
Sbjct: 241 YSRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSIS 300

Query: 301 EQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSRSKSRSLSRSLSPEGRSDRSRSRS- 312
           EQSQSKSLSRSRSRSRSGSPVSSR ERKIQNRSRSRSKSRSLSRSLSP+GRSDRSRSRS 
Sbjct: 301 EQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSR 360

[Close]

BLAST of Cp4.1LG04g00470 vs. ExPASy TrEMBL
Match: A0A6J1ESI8 (serine/arginine-rich splicing factor SR30-like OS=Cucurbita moschata OX=3662 GN=LOC111435599 PE=4 SV=1)

HSP 1 Score: 533 bits (1374), Expect = 1.42e-189
Identity = 301/336 (89.58%), Postives = 307/336 (91.37%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                      FED+RDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDIRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           VRVKEYDSRRSYSRSPSRDSR+SDYSRSPSRSP+GERGRS+SRSRSRSRSQSRSL RSHS
Sbjct: 181 VRVKEYDSRRSYSRSPSRDSRRSDYSRSPSRSPHGERGRSQSRSRSRSRSQSRSLRRSHS 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSR 300
           HSHSGRSTS SPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSR ERK QNRSRSR
Sbjct: 241 HSHSGRSTSLSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRRERKFQNRSRSR 300

Query: 301 SKSRSLSRSLSPEGRSDRSRSRSQS--VDSRDRYSE 312
           SKSRSLSRSLSP+GRSDRSRSRS+S  VDSRDRYSE
Sbjct: 301 SKSRSLSRSLSPDGRSDRSRSRSRSRSVDSRDRYSE 335

[Close]

BLAST of Cp4.1LG04g00470 vs. ExPASy TrEMBL
Match: A0A6J1HYQ5 (serine/arginine-rich splicing factor SR30-like OS=Cucurbita maxima OX=3661 GN=LOC111468858 PE=4 SV=1)

HSP 1 Score: 532 bits (1370), Expect = 6.23e-189
Identity = 303/338 (89.64%), Postives = 306/338 (90.53%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                      FEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-HSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRS----RSRSRSRSRSQSRSLI 240
           VRVKEYDSRRSYSRSPSRDSR+SDYSRSPS SPYGERGRS    RSRSRSRSRSQSRSL 
Sbjct: 181 VRVKEYDSRRSYSRSPSRDSRRSDYSRSPSCSPYGERGRSQSRSRSRSRSRSRSQSRSLR 240

Query: 241 RSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNR 300
           RS SHSHSGRSTS SPRLKHSR+SPSISEQSQSKSLSRSRSRSRSGSPVSSR ERKIQNR
Sbjct: 241 RSRSHSHSGRSTSLSPRLKHSRQSPSISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNR 300

Query: 301 SRSRSKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE 312
           SRSRSKSRSLSRSLSP+GRSDRSRSRSQSVDSRDRYSE
Sbjct: 301 SRSRSKSRSLSRSLSPDGRSDRSRSRSQSVDSRDRYSE 337

[Close]

BLAST of Cp4.1LG04g00470 vs. ExPASy TrEMBL
Match: A0A6J1C3Z4 (serine/arginine-rich splicing factor SR30 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007710 PE=4 SV=1)

HSP 1 Score: 475 bits (1222), Expect = 1.33e-166
Identity = 276/335 (82.39%), Postives = 285/335 (85.07%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRL+EVEDLFYK                      FEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLKEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG  SSSID YSRSGSSRGGVSRRTDYRVLVTGLPPS
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-QSSSIDRYSRSGSSRGGVSRRTDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSR+Y
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           VRVKEYDSRRSYSRSPS DSR+SDYSRSPSRSPY ERGRSRSRSRS SRS          
Sbjct: 181 VRVKEYDSRRSYSRSPSHDSRRSDYSRSPSRSPYRERGRSRSRSRSLSRS---------- 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRH-ERKIQNRSRS 300
           HSHSGRSTS SPRL HSRRS SISEQS+SKSLSRSRSRSRS SP+SSRH E K ++RSRS
Sbjct: 241 HSHSGRSTSLSPRLNHSRRSRSISEQSRSKSLSRSRSRSRSRSPISSRHRESKPRSRSRS 300

Query: 301 RSKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE 312
           RS SRSLSRSLSP  RSD+SRSR  SV+SRDRYSE
Sbjct: 301 RSNSRSLSRSLSPNARSDQSRSRGLSVESRDRYSE 324

[Close]

BLAST of Cp4.1LG04g00470 vs. ExPASy TrEMBL
Match: A0A6J1C1X9 (serine/arginine-rich splicing factor SR30 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007710 PE=4 SV=1)

HSP 1 Score: 469 bits (1207), Expect = 2.95e-164
Identity = 276/339 (81.42%), Postives = 285/339 (84.07%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRL+EVEDLFYK                      FEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLKEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG  SSSID YSRSGSSRGGVSRRTDYRVLVTGLPPS
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-QSSSIDRYSRSGSSRGGVSRRTDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSR+Y
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           VRVKEYDSRRSYSRSPS DSR+SDYSRSPSRSPY ERGRSRSRSRS SRS          
Sbjct: 181 VRVKEYDSRRSYSRSPSHDSRRSDYSRSPSRSPYRERGRSRSRSRSLSRS---------- 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRH-ERKIQNRSRS 300
           HSHSGRSTS SPRL HSRRS SISEQS+SKSLSRSRSRSRS SP+SSRH E K ++RSRS
Sbjct: 241 HSHSGRSTSLSPRLNHSRRSRSISEQSRSKSLSRSRSRSRSRSPISSRHRESKPRSRSRS 300

Query: 301 RSKSRSLSRSLSPE----GRSDRSRSRSQSVDSRDRYSE 312
           RS SRSLSRSLSP      RSD+SRSR  SV+SRDRYSE
Sbjct: 301 RSNSRSLSRSLSPNVVILARSDQSRSRGLSVESRDRYSE 328

[Close]

BLAST of Cp4.1LG04g00470 vs. ExPASy TrEMBL
Match: A0A1S3BPM4 (serine/arginine-rich splicing factor SR30 OS=Cucumis melo OX=3656 GN=LOC103492152 PE=4 SV=1)

HSP 1 Score: 456 bits (1174), Expect = 2.33e-159
Identity = 269/334 (80.54%), Postives = 278/334 (83.23%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                      FEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG HSSS+D YSRSGSSRGGV RRTDYRVLVTGLP S
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-HSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           VRVKEYDSR SYSRSPS DSR+SDYSRSPS SPY  RGRS+SRSRSRSRS+S        
Sbjct: 181 VRVKEYDSRHSYSRSPSLDSRRSDYSRSPSGSPYRGRGRSQSRSRSRSRSRS-------- 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSR 300
             +SGRSTS SPR KHSRRS SISEQS S+S SRSRSRSRS SPVSSRH     +R RSR
Sbjct: 241 --YSGRSTSLSPRHKHSRRSRSISEQSLSRSRSRSRSRSRSRSPVSSRHR---ASRPRSR 300

Query: 301 SKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE 312
           S+SRS SRSLSP  RSDRSRSRSQSVDSRD+YSE
Sbjct: 301 SRSRSKSRSLSPNVRSDRSRSRSQSVDSRDQYSE 320

[Close]

BLAST of Cp4.1LG04g00470 vs. TAIR 10
Match: AT1G09140.1 (SERINE-ARGININE PROTEIN 30 )

HSP 1 Score: 266.9 bits (681), Expect = 2.0e-71
Identity = 175/287 (60.98%), Postives = 197/287 (68.64%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYK                      FED RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGY FDGCRLRVE AHGGR   S S+D YS S S+    SRR+DYRVLVTGLPPS
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGR-RFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMR+AGDVCFSEVF DR GM+G+VDY+NYDDMKYAIRKLD +EFRNAFS AY
Sbjct: 121 ASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           +RV+EY+S RS SRSP  D  +S  SRS SR P          S+SRS S +RS+     
Sbjct: 181 IRVREYES-RSVSRSP--DDSKSYRSRSRSRGP-----SCSYSSKSRSVSPARSI----- 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSI-SEQSQSKSLSRSRSRSRSGSPVS 265
                     SPR +   RS S+ S  S+S+S S+SRSRSRS SPVS
Sbjct: 241 ----------SPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPVS 263

[Close]

BLAST of Cp4.1LG04g00470 vs. TAIR 10
Match: AT1G09140.2 (SERINE-ARGININE PROTEIN 30 )

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-69
Identity = 164/252 (65.08%), Postives = 181/252 (71.83%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYK                      FED RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGY FDGCRLRVE AHGGR   S S+D YS S S+    SRR+DYRVLVTGLPPS
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGR-RFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMR+AGDVCFSEVF DR GM+G+VDY+NYDDMKYAIRKLD +EFRNAFS AY
Sbjct: 121 ASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSP---YGERGRSRSRSRS---RSR--SQS 223
           +RV+EY+S RS SRSP  D  +S  SRS SR P   Y  + RS S +RS   RSR  S+S
Sbjct: 181 IRVREYES-RSVSRSP--DDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRS 240

[Close]

BLAST of Cp4.1LG04g00470 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 251.9 bits (642), Expect = 6.7e-67
Identity = 174/324 (53.70%), Postives = 202/324 (62.35%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MS R SR+IYVGNLPGDIR  E+ED+FYK                      FE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGG--------RGGHSSSIDHY----SRSGSSRGGVSRRT 120
           AI GRDGY  DGCRLRVE AHGG        RGG+      Y       GS+R GVSR +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLD 180
           ++RV+V GLP SASWQDLKDHMR+AGDVCF+EV RD  G  G+VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRS 240
           D+EFRN ++R ++RVK+Y+S RS SRSPSR       SRS SRS      RSRSR R RS
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSR-------SRSRSRS------RSRSRGRGRS 240

Query: 241 RSQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSR 291
            S+SRSL RS S     +  S SPR                +SLSRS S+SRS SP   +
Sbjct: 241 HSRSRSLSRSKS---PRKDLSKSPR----------------RSLSRSISKSRSPSPDKKK 292

[Close]

BLAST of Cp4.1LG04g00470 vs. TAIR 10
Match: AT3G49430.3 (SER/ARG-rich protein 34A )

HSP 1 Score: 251.9 bits (642), Expect = 6.7e-67
Identity = 174/324 (53.70%), Postives = 202/324 (62.35%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MS R SR+IYVGNLPGDIR  E+ED+FYK                      FE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGG--------RGGHSSSIDHY----SRSGSSRGGVSRRT 120
           AI GRDGY  DGCRLRVE AHGG        RGG+      Y       GS+R GVSR +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLD 180
           ++RV+V GLP SASWQDLKDHMR+AGDVCF+EV RD  G  G+VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRS 240
           D+EFRN ++R ++RVK+Y+S RS SRSPSR       SRS SRS      RSRSR R RS
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSR-------SRSRSRS------RSRSRGRGRS 240

Query: 241 RSQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSR 291
            S+SRSL RS S     +  S SPR                +SLSRS S+SRS SP   +
Sbjct: 241 HSRSRSLSRSKS---PRKDLSKSPR----------------RSLSRSISKSRSPSPDKKK 292

[Close]

BLAST of Cp4.1LG04g00470 vs. TAIR 10
Match: AT1G02840.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 251.5 bits (641), Expect = 8.7e-67
Identity = 170/298 (57.05%), Postives = 193/298 (64.77%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRT+YVGNLPGDIR REVEDLF K                      F+D RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRG-----------GVSRRTD 120
           AI+GRDGY FDG RLRVE AHGGR   SS     S +G  RG           G SRR++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR--RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 120

Query: 121 YRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDD 180
           +RVLVTGLP SASWQDLKDHMR+ GDVCFS+V+RD  G  G+VDYT Y+DMKYA++KLDD
Sbjct: 121 FRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 180

Query: 181 SEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSR 240
           +EFRNAFS  YVRV+EYDSR+  SRSPSR      YS+S SRS    RGRS SRSRSRSR
Sbjct: 181 TEFRNAFSNGYVRVREYDSRKD-SRSPSRG---RSYSKSRSRS----RGRSVSRSRSRSR 240

Query: 241 SQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRS---RSRSRSGSP 263
           S+SR                 SP+ K SRRSP       +KS SRS   RS+SRS SP
Sbjct: 241 SRSR-----------------SPKAKSSRRSP-------AKSTSRSPGPRSKSRSPSP 264

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XFR5	2.8e-70	60.98	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
A2RVS6	9.4e-66	53.70	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
O22315	2.1e-65	54.19	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
F4JHI7	9.7e-63	56.36	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9NEW6	3.7e-46	49.21	Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=62...	[more]

BLAST of Cp4.1LG04g00470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530260.1	7.51e-201	93.41	serine/arginine-rich splicing factor SR30-like [Cucurbita pepo subsp. pepo] >XP_...	[more]
KAG6588492.1	7.58e-192	90.77	Serine/arginine-rich splicing factor SR30, partial [Cucurbita argyrosperma subsp...	[more]
XP_022928780.1	2.94e-189	89.58	serine/arginine-rich splicing factor SR30-like [Cucurbita moschata] >XP_02292878...	[more]
XP_022969758.1	1.29e-188	89.64	serine/arginine-rich splicing factor SR30-like [Cucurbita maxima] >XP_022969766....	[more]
KAG7022321.1	8.49e-186	81.99	Serine/arginine-rich splicing factor SR30 [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of Cp4.1LG04g00470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESI8	1.42e-189	89.58	serine/arginine-rich splicing factor SR30-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HYQ5	6.23e-189	89.64	serine/arginine-rich splicing factor SR30-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1C3Z4	1.33e-166	82.39	serine/arginine-rich splicing factor SR30 isoform X2 OS=Momordica charantia OX=3...	[more]
A0A6J1C1X9	2.95e-164	81.42	serine/arginine-rich splicing factor SR30 isoform X1 OS=Momordica charantia OX=3...	[more]
A0A1S3BPM4	2.33e-159	80.54	serine/arginine-rich splicing factor SR30 OS=Cucumis melo OX=3656 GN=LOC10349215...	[more]

BLAST of Cp4.1LG04g00470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09140.1	2.0e-71	60.98	SERINE-ARGININE PROTEIN 30	[more]
AT1G09140.2	1.4e-69	65.08	SERINE-ARGININE PROTEIN 30	[more]
AT3G49430.1	6.7e-67	53.70	SER/ARG-rich protein 34A	[more]
AT3G49430.3	6.7e-67	53.70	SER/ARG-rich protein 34A	[more]
AT1G02840.2	8.7e-67	57.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..56 e-value: 0.015 score: 22.7 coord: 89..160 e-value: 1.3E-6 score: 37.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 90..152 e-value: 7.1E-10 score: 38.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 88..166 score: 9.746194
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 27..88 e-value: 2.3E-6 score: 29.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 89..165 e-value: 6.1E-22 score: 79.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..218
None	No IPR available	PANTHER	PTHR23147:SF198	PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN	coord: 29..285 coord: 2..30
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 29..285 coord: 2..30
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 88..163 e-value: 3.55031E-44 score: 143.801
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00470.1	Cp4.1LG04g00470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding