CmoCh12G002980 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G002980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionserine-rich protein-related
LocationCmo_Chr12: 1876490 .. 1876984 (-)
RNA-Seq ExpressionCmoCh12G002980
SyntenyCmoCh12G002980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAACGAAACAAGCGGCCCTGTTCTCCGGCCACTTCCCGCCGGCGGCGGCGGCGGATTTAACTCCACGTTCTTCCACAACCACCGTCGATCTGCTTCTTCTCGAGTGAACATCTCTTCCTCTCCCATGTCTCACTCTGTTCGATTTTCCCTAGGTCACCGGTCCATCGCCGTCTCAAATCGGAACTCGCCGGTTTCTCAGCCGTGTATGTGTTCGCCGACGAACCACCCCGGCTCCTTCCGGTGCAGTCTGCATAAAAATGGCGGCAGTAGCCGACACCATCAGACGTTGTCGGCGTATTCGTCGAGGCGTTTGAATATGCGGCGGTCTGCAATGACGAACTCGCTCGTGAGAATCGGTGGCGTTGAAGGAGACTTGGTCAACCGAGCGTTGACTGCTTTGATTCGACCTTCTTCGCACCAACAGCGACGGAGAGCCAATTTTCAGTCGCGCCCCAGCCGGCTTTCGGCCATGTCCGAAAATCATAATTGA

mRNA sequence

ATGAACAACGAAACAAGCGGCCCTGTTCTCCGGCCACTTCCCGCCGGCGGCGGCGGCGGATTTAACTCCACGTTCTTCCACAACCACCGTCGATCTGCTTCTTCTCGAGTGAACATCTCTTCCTCTCCCATGTCTCACTCTGTTCGATTTTCCCTAGGTCACCGGTCCATCGCCGTCTCAAATCGGAACTCGCCGGTTTCTCAGCCGTGTATGTGTTCGCCGACGAACCACCCCGGCTCCTTCCGGTGCAGTCTGCATAAAAATGGCGGCAGTAGCCGACACCATCAGACGTTGTCGGCGTATTCGTCGAGGCGTTTGAATATGCGGCGGTCTGCAATGACGAACTCGCTCGTGAGAATCGGTGGCGTTGAAGGAGACTTGGTCAACCGAGCGTTGACTGCTTTGATTCGACCTTCTTCGCACCAACAGCGACGGAGAGCCAATTTTCAGTCGCGCCCCAGCCGGCTTTCGGCCATGTCCGAAAATCATAATTGA

Coding sequence (CDS)

ATGAACAACGAAACAAGCGGCCCTGTTCTCCGGCCACTTCCCGCCGGCGGCGGCGGCGGATTTAACTCCACGTTCTTCCACAACCACCGTCGATCTGCTTCTTCTCGAGTGAACATCTCTTCCTCTCCCATGTCTCACTCTGTTCGATTTTCCCTAGGTCACCGGTCCATCGCCGTCTCAAATCGGAACTCGCCGGTTTCTCAGCCGTGTATGTGTTCGCCGACGAACCACCCCGGCTCCTTCCGGTGCAGTCTGCATAAAAATGGCGGCAGTAGCCGACACCATCAGACGTTGTCGGCGTATTCGTCGAGGCGTTTGAATATGCGGCGGTCTGCAATGACGAACTCGCTCGTGAGAATCGGTGGCGTTGAAGGAGACTTGGTCAACCGAGCGTTGACTGCTTTGATTCGACCTTCTTCGCACCAACAGCGACGGAGAGCCAATTTTCAGTCGCGCCCCAGCCGGCTTTCGGCCATGTCCGAAAATCATAATTGA

Protein sequence

MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
Homology
BLAST of CmoCh12G002980 vs. ExPASy TrEMBL
Match: A0A6J1GHM5 (uncharacterized protein LOC111454267 OS=Cucurbita moschata OX=3662 GN=LOC111454267 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.4e-84
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0

Query: 1   MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVS 60
           MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVS
Sbjct: 1   MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVS 60

Query: 61  NRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRI 120
           NRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRI
Sbjct: 61  NRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRI 120

Query: 121 GGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN 165
           GGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
Sbjct: 121 GGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN 164

BLAST of CmoCh12G002980 vs. ExPASy TrEMBL
Match: A0A6J1K7C8 (uncharacterized protein LOC111491813 OS=Cucurbita maxima OX=3661 GN=LOC111491813 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.9e-50
Identity = 124/180 (68.89%), Postives = 135/180 (75.00%), Query Frame = 0

Query: 1   MNNETSGPVLRPLPAGG------GGGFNST---FFHNHRRSAS-SRVNISSSPMSHSVRF 60
           M  ETSGPVLRPLPA G        GF+ST   FFHNH R+AS +RVNISSSP+S SVRF
Sbjct: 1   MKKETSGPVLRPLPAAGRFAASKSFGFSSTSSSFFHNHERNASPTRVNISSSPLSRSVRF 60

Query: 61  SLGH------RSIAVSNRNSPVSQP---CMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAY 120
           S+ H      RSI +SNRNSPVS P   C CSPT HPGSFRCSLH+N G+  HHQT   Y
Sbjct: 61  SIDHRSGSPSRSITLSNRNSPVSLPKKTCTCSPTTHPGSFRCSLHRNSGNGGHHQT---Y 120

Query: 121 SSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE 162
           SS  LNMRRSAM NSLVRIGGVEGD V RALTALIRPSSHQ RRRANF+ RPSRLS +S+
Sbjct: 121 SSSGLNMRRSAMKNSLVRIGGVEGDWVKRALTALIRPSSHQLRRRANFRPRPSRLSVVSK 177

BLAST of CmoCh12G002980 vs. ExPASy TrEMBL
Match: A0A6J1HGM5 (uncharacterized protein LOC111462780 OS=Cucurbita moschata OX=3662 GN=LOC111462780 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.9e-50
Identity = 126/188 (67.02%), Postives = 136/188 (72.34%), Query Frame = 0

Query: 1   MNNETSGPVLRPLPAGG--------------GGGFNST---FFHNHRRSAS-SRVNISSS 60
           M  ETSGPVLRPLPA G                GF+ST   FFHN  RSAS +RVNISS 
Sbjct: 1   MKKETSGPVLRPLPAAGRFHSPISSPFAASTSFGFSSTSSSFFHNRERSASPTRVNISSG 60

Query: 61  PMSHSVRFSLGH------RSIAVSNRNSPVSQP---CMCSPTNHPGSFRCSLHKNGGSSR 120
           P+S SVRFS+ H      RSIA+SNRNSPVSQP   C CSPT HPGSFRCSLH+N G+  
Sbjct: 61  PLSRSVRFSIDHRSGSTSRSIALSNRNSPVSQPKKTCTCSPTTHPGSFRCSLHRNSGNGG 120

Query: 121 HHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRP 162
           HHQT   YSS  LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ RRRANF+ RP
Sbjct: 121 HHQT---YSSSGLNMRRSAMTNSLVRIGGVEGDWVKRALTALIRPSSHQLRRRANFRPRP 180

BLAST of CmoCh12G002980 vs. ExPASy TrEMBL
Match: A0A5A7VCJ2 (Nuclear transcription factor Y subunit gamma-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002280 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 125/197 (63.45%), Postives = 138/197 (70.05%), Query Frame = 0

Query: 1   MNNETSGPVLRPLPAGG------------------GGGF---NSTFF-------HNHRRS 60
           M  ETSGPVLRP PAGG                    GF   +STF        HNH RS
Sbjct: 1   MKKETSGPVLRPFPAGGRFQSQFSSPGTSPFAASTNFGFSSGSSTFLQNHDDHHHNHHRS 60

Query: 61  AS-SRVNISSSPMSHSVRFSLGHRSIA--VSNRNSPVS---QPCMCSPTNHPGSFRCSLH 120
           AS +RVNISS+P+S SVRFS+GHRS +  +SNRNSPVS   +PCMCSPT HPGSFRCSLH
Sbjct: 61  ASPTRVNISSTPLSRSVRFSIGHRSGSPKLSNRNSPVSLPKKPCMCSPTTHPGSFRCSLH 120

Query: 121 KNGGSS--RHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQR 162
           K  GS   +H  + SAYSS  LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ R
Sbjct: 121 KKSGSGIHQHQASSSAYSSTGLNMRRSAMTNSLVRIGGVEGDWVKRALTALIRPSSHQLR 180

BLAST of CmoCh12G002980 vs. ExPASy TrEMBL
Match: A0A1S3BC71 (nuclear transcription factor Y subunit gamma-like OS=Cucumis melo OX=3656 GN=LOC103488327 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 125/197 (63.45%), Postives = 138/197 (70.05%), Query Frame = 0

Query: 1   MNNETSGPVLRPLPAGG------------------GGGF---NSTFF-------HNHRRS 60
           M  ETSGPVLRP PAGG                    GF   +STF        HNH RS
Sbjct: 1   MKKETSGPVLRPFPAGGRFQSQFSSPGTSPFAASTNFGFSSGSSTFLQNHDDHHHNHHRS 60

Query: 61  AS-SRVNISSSPMSHSVRFSLGHRSIA--VSNRNSPVS---QPCMCSPTNHPGSFRCSLH 120
           AS +RVNISS+P+S SVRFS+GHRS +  +SNRNSPVS   +PCMCSPT HPGSFRCSLH
Sbjct: 61  ASPTRVNISSTPLSRSVRFSIGHRSGSPKLSNRNSPVSLPKKPCMCSPTTHPGSFRCSLH 120

Query: 121 KNGGSS--RHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQR 162
           K  GS   +H  + SAYSS  LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ R
Sbjct: 121 KKSGSGIHQHQASSSAYSSTGLNMRRSAMTNSLVRIGGVEGDWVKRALTALIRPSSHQLR 180

BLAST of CmoCh12G002980 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-35
Identity = 86/149 (57.72%), Postives = 108/149 (72.48%), Query Frame = 0

Query: 27  HNHRRSAS-SRVNI-SSSPMSHSVRFSLGHRSIAVSNR------------NSPVSQPCMC 86
           H+H RSAS +RVN+ ++ PMS S R+SL  RSI+ +N+            N  +S+ CMC
Sbjct: 66  HSHHRSASPTRVNLYTAQPMSQSFRYSLDSRSISPTNKSISVSKNQPPSHNHKISRRCMC 125

Query: 87  SPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRAL 146
           SPT HPGSFRCSLHKN  ++ H Q  ++Y++  LNMRRSAMTNSLVRIGGVEG+ V RAL
Sbjct: 126 SPTTHPGSFRCSLHKN-VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVRRAL 185

Query: 147 TALIRPSSHQQRRRANFQSRPSRLSAMSE 162
           T LIRPSSH  +RRA +Q RPSRLS M++
Sbjct: 186 TTLIRPSSHHLKRRAAYQPRPSRLSIMAK 213

BLAST of CmoCh12G002980 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 135.6 bits (340), Expect = 3.7e-32
Identity = 82/155 (52.90%), Postives = 109/155 (70.32%), Query Frame = 0

Query: 22  NSTFFHNHRRSASSRVNI-SSSPMSHSVRFSLGHRSIAVSNRNSPVS------------- 81
           N    H HR ++ +RVN+ +S+PM+ S R+S+ +RSI+  NR+  VS             
Sbjct: 64  NQNNHHQHRSASPTRVNLFTSAPMTQSFRYSIDNRSIS-PNRSIAVSSNKPSNHHKIPDS 123

Query: 82  -QPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGD 141
            + CMCSPT HPGSFRCSLHKN  ++ H Q  ++Y++  LNMRRSAMTNSLVRIGGVEG+
Sbjct: 124 RRRCMCSPTTHPGSFRCSLHKN-VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGE 183

Query: 142 LVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE 162
            V RALT LIRPSSHQ +RR+ ++ R SRL++MS+
Sbjct: 184 WVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMSK 216

BLAST of CmoCh12G002980 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 135.6 bits (340), Expect = 3.7e-32
Identity = 82/155 (52.90%), Postives = 109/155 (70.32%), Query Frame = 0

Query: 22  NSTFFHNHRRSASSRVNI-SSSPMSHSVRFSLGHRSIAVSNRNSPVS------------- 81
           N    H HR ++ +RVN+ +S+PM+ S R+S+ +RSI+  NR+  VS             
Sbjct: 64  NQNNHHQHRSASPTRVNLFTSAPMTQSFRYSIDNRSIS-PNRSIAVSSNKPSNHHKIPDS 123

Query: 82  -QPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGD 141
            + CMCSPT HPGSFRCSLHKN  ++ H Q  ++Y++  LNMRRSAMTNSLVRIGGVEG+
Sbjct: 124 RRRCMCSPTTHPGSFRCSLHKN-VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGE 183

Query: 142 LVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE 162
            V RALT LIRPSSHQ +RR+ ++ R SRL++MS+
Sbjct: 184 WVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMSK 216

BLAST of CmoCh12G002980 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-12
Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 0

Query: 5   TSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRF----SLGHRSIAVS 64
           +S  VLRPL        ++   H+HR+ + S  N     ++  ++F    S+   S+   
Sbjct: 7   SSRSVLRPL--SSSQRLHNNHHHHHRQRSPSPCN---KNLNLRLKFYSPGSIPKPSVVTV 66

Query: 65  NRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRR-------------LN 124
           + N    + C+CSPT HPGSFRCS H+     +  +TL++ + +R             LN
Sbjct: 67  SSNHQTKRKCLCSPTTHPGSFRCSFHRRLEHEK-SKTLASSTVKRNNRGDNTIRVNVGLN 126

Query: 125 MRRSAMTNSLVRIGGVEGDLVNRALTA-LIRPSSHQQRRRANFQSRPSR 156
           +R+ A+ NSL +IG VE +   R+L A L +PSS    RR  F+ R SR
Sbjct: 127 LRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSR 169

BLAST of CmoCh12G002980 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 41.2 bits (95), Expect = 9.4e-04
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 0

Query: 53 GHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHK 88
          G  S+ +S ++S V Q C+C+PT HPGSFRC  H+
Sbjct: 49 GGGSVGMS-KSSSVRQNCLCAPTTHPGSFRCRYHR 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GHM52.4e-84100.00uncharacterized protein LOC111454267 OS=Cucurbita moschata OX=3662 GN=LOC1114542... [more]
A0A6J1K7C83.9e-5068.89uncharacterized protein LOC111491813 OS=Cucurbita maxima OX=3661 GN=LOC111491813... [more]
A0A6J1HGM53.9e-5067.02uncharacterized protein LOC111462780 OS=Cucurbita moschata OX=3662 GN=LOC1114627... [more]
A0A5A7VCJ21.8e-4763.45Nuclear transcription factor Y subunit gamma-like OS=Cucumis melo var. makuwa OX... [more]
A0A1S3BC711.8e-4763.45nuclear transcription factor Y subunit gamma-like OS=Cucumis melo OX=3656 GN=LOC... [more]
Match NameE-valueIdentityDescription
AT5G11090.16.0e-3557.72serine-rich protein-related [more]
AT5G25280.13.7e-3252.90serine-rich protein-related [more]
AT5G25280.23.7e-3252.90serine-rich protein-related [more]
AT5G20370.17.2e-1233.14serine-rich protein-related [more]
AT3G13227.19.4e-0451.43serine-rich protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 22..162
NoneNo IPR availablePANTHERPTHR33132:SF80BNACNNG20100D PROTEINcoord: 22..162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G002980.1CmoCh12G002980.1mRNA