Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAACGAAACAAGCGGCCCTGTTCTCCGGCCACTTCCCGCCGGCGGCGGCGGCGGATTTAACTCCACGTTCTTCCACAACCACCGTCGATCTGCTTCTTCTCGAGTGAACATCTCTTCCTCTCCCATGTCTCACTCTGTTCGATTTTCCCTAGGTCACCGGTCCATCGCCGTCTCAAATCGGAACTCGCCGGTTTCTCAGCCGTGTATGTGTTCGCCGACGAACCACCCCGGCTCCTTCCGGTGCAGTCTGCATAAAAATGGCGGCAGTAGCCGACACCATCAGACGTTGTCGGCGTATTCGTCGAGGCGTTTGAATATGCGGCGGTCTGCAATGACGAACTCGCTCGTGAGAATCGGTGGCGTTGAAGGAGACTTGGTCAACCGAGCGTTGACTGCTTTGATTCGACCTTCTTCGCACCAACAGCGACGGAGAGCCAATTTTCAGTCGCGCCCCAGCCGGCTTTCGGCCATGTCCGAAAATCATAATTGA
mRNA sequence
ATGAACAACGAAACAAGCGGCCCTGTTCTCCGGCCACTTCCCGCCGGCGGCGGCGGCGGATTTAACTCCACGTTCTTCCACAACCACCGTCGATCTGCTTCTTCTCGAGTGAACATCTCTTCCTCTCCCATGTCTCACTCTGTTCGATTTTCCCTAGGTCACCGGTCCATCGCCGTCTCAAATCGGAACTCGCCGGTTTCTCAGCCGTGTATGTGTTCGCCGACGAACCACCCCGGCTCCTTCCGGTGCAGTCTGCATAAAAATGGCGGCAGTAGCCGACACCATCAGACGTTGTCGGCGTATTCGTCGAGGCGTTTGAATATGCGGCGGTCTGCAATGACGAACTCGCTCGTGAGAATCGGTGGCGTTGAAGGAGACTTGGTCAACCGAGCGTTGACTGCTTTGATTCGACCTTCTTCGCACCAACAGCGACGGAGAGCCAATTTTCAGTCGCGCCCCAGCCGGCTTTCGGCCATGTCCGAAAATCATAATTGA
Coding sequence (CDS)
ATGAACAACGAAACAAGCGGCCCTGTTCTCCGGCCACTTCCCGCCGGCGGCGGCGGCGGATTTAACTCCACGTTCTTCCACAACCACCGTCGATCTGCTTCTTCTCGAGTGAACATCTCTTCCTCTCCCATGTCTCACTCTGTTCGATTTTCCCTAGGTCACCGGTCCATCGCCGTCTCAAATCGGAACTCGCCGGTTTCTCAGCCGTGTATGTGTTCGCCGACGAACCACCCCGGCTCCTTCCGGTGCAGTCTGCATAAAAATGGCGGCAGTAGCCGACACCATCAGACGTTGTCGGCGTATTCGTCGAGGCGTTTGAATATGCGGCGGTCTGCAATGACGAACTCGCTCGTGAGAATCGGTGGCGTTGAAGGAGACTTGGTCAACCGAGCGTTGACTGCTTTGATTCGACCTTCTTCGCACCAACAGCGACGGAGAGCCAATTTTCAGTCGCGCCCCAGCCGGCTTTCGGCCATGTCCGAAAATCATAATTGA
Protein sequence
MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
Homology
BLAST of CmoCh12G002980 vs. ExPASy TrEMBL
Match:
A0A6J1GHM5 (uncharacterized protein LOC111454267 OS=Cucurbita moschata OX=3662 GN=LOC111454267 PE=4 SV=1)
HSP 1 Score: 321.2 bits (822), Expect = 2.4e-84
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query: 1 MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVS 60
MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVS
Sbjct: 1 MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVS 60
Query: 61 NRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRI 120
NRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRI
Sbjct: 61 NRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRI 120
Query: 121 GGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN 165
GGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
Sbjct: 121 GGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN 164
BLAST of CmoCh12G002980 vs. ExPASy TrEMBL
Match:
A0A6J1K7C8 (uncharacterized protein LOC111491813 OS=Cucurbita maxima OX=3661 GN=LOC111491813 PE=4 SV=1)
HSP 1 Score: 207.6 bits (527), Expect = 3.9e-50
Identity = 124/180 (68.89%), Postives = 135/180 (75.00%), Query Frame = 0
Query: 1 MNNETSGPVLRPLPAGG------GGGFNST---FFHNHRRSAS-SRVNISSSPMSHSVRF 60
M ETSGPVLRPLPA G GF+ST FFHNH R+AS +RVNISSSP+S SVRF
Sbjct: 1 MKKETSGPVLRPLPAAGRFAASKSFGFSSTSSSFFHNHERNASPTRVNISSSPLSRSVRF 60
Query: 61 SLGH------RSIAVSNRNSPVSQP---CMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAY 120
S+ H RSI +SNRNSPVS P C CSPT HPGSFRCSLH+N G+ HHQT Y
Sbjct: 61 SIDHRSGSPSRSITLSNRNSPVSLPKKTCTCSPTTHPGSFRCSLHRNSGNGGHHQT---Y 120
Query: 121 SSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE 162
SS LNMRRSAM NSLVRIGGVEGD V RALTALIRPSSHQ RRRANF+ RPSRLS +S+
Sbjct: 121 SSSGLNMRRSAMKNSLVRIGGVEGDWVKRALTALIRPSSHQLRRRANFRPRPSRLSVVSK 177
BLAST of CmoCh12G002980 vs. ExPASy TrEMBL
Match:
A0A6J1HGM5 (uncharacterized protein LOC111462780 OS=Cucurbita moschata OX=3662 GN=LOC111462780 PE=4 SV=1)
HSP 1 Score: 207.6 bits (527), Expect = 3.9e-50
Identity = 126/188 (67.02%), Postives = 136/188 (72.34%), Query Frame = 0
Query: 1 MNNETSGPVLRPLPAGG--------------GGGFNST---FFHNHRRSAS-SRVNISSS 60
M ETSGPVLRPLPA G GF+ST FFHN RSAS +RVNISS
Sbjct: 1 MKKETSGPVLRPLPAAGRFHSPISSPFAASTSFGFSSTSSSFFHNRERSASPTRVNISSG 60
Query: 61 PMSHSVRFSLGH------RSIAVSNRNSPVSQP---CMCSPTNHPGSFRCSLHKNGGSSR 120
P+S SVRFS+ H RSIA+SNRNSPVSQP C CSPT HPGSFRCSLH+N G+
Sbjct: 61 PLSRSVRFSIDHRSGSTSRSIALSNRNSPVSQPKKTCTCSPTTHPGSFRCSLHRNSGNGG 120
Query: 121 HHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRP 162
HHQT YSS LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ RRRANF+ RP
Sbjct: 121 HHQT---YSSSGLNMRRSAMTNSLVRIGGVEGDWVKRALTALIRPSSHQLRRRANFRPRP 180
BLAST of CmoCh12G002980 vs. ExPASy TrEMBL
Match:
A0A5A7VCJ2 (Nuclear transcription factor Y subunit gamma-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002280 PE=4 SV=1)
HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 125/197 (63.45%), Postives = 138/197 (70.05%), Query Frame = 0
Query: 1 MNNETSGPVLRPLPAGG------------------GGGF---NSTFF-------HNHRRS 60
M ETSGPVLRP PAGG GF +STF HNH RS
Sbjct: 1 MKKETSGPVLRPFPAGGRFQSQFSSPGTSPFAASTNFGFSSGSSTFLQNHDDHHHNHHRS 60
Query: 61 AS-SRVNISSSPMSHSVRFSLGHRSIA--VSNRNSPVS---QPCMCSPTNHPGSFRCSLH 120
AS +RVNISS+P+S SVRFS+GHRS + +SNRNSPVS +PCMCSPT HPGSFRCSLH
Sbjct: 61 ASPTRVNISSTPLSRSVRFSIGHRSGSPKLSNRNSPVSLPKKPCMCSPTTHPGSFRCSLH 120
Query: 121 KNGGSS--RHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQR 162
K GS +H + SAYSS LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ R
Sbjct: 121 KKSGSGIHQHQASSSAYSSTGLNMRRSAMTNSLVRIGGVEGDWVKRALTALIRPSSHQLR 180
BLAST of CmoCh12G002980 vs. ExPASy TrEMBL
Match:
A0A1S3BC71 (nuclear transcription factor Y subunit gamma-like OS=Cucumis melo OX=3656 GN=LOC103488327 PE=4 SV=1)
HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 125/197 (63.45%), Postives = 138/197 (70.05%), Query Frame = 0
Query: 1 MNNETSGPVLRPLPAGG------------------GGGF---NSTFF-------HNHRRS 60
M ETSGPVLRP PAGG GF +STF HNH RS
Sbjct: 1 MKKETSGPVLRPFPAGGRFQSQFSSPGTSPFAASTNFGFSSGSSTFLQNHDDHHHNHHRS 60
Query: 61 AS-SRVNISSSPMSHSVRFSLGHRSIA--VSNRNSPVS---QPCMCSPTNHPGSFRCSLH 120
AS +RVNISS+P+S SVRFS+GHRS + +SNRNSPVS +PCMCSPT HPGSFRCSLH
Sbjct: 61 ASPTRVNISSTPLSRSVRFSIGHRSGSPKLSNRNSPVSLPKKPCMCSPTTHPGSFRCSLH 120
Query: 121 KNGGSS--RHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQR 162
K GS +H + SAYSS LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ R
Sbjct: 121 KKSGSGIHQHQASSSAYSSTGLNMRRSAMTNSLVRIGGVEGDWVKRALTALIRPSSHQLR 180
BLAST of CmoCh12G002980 vs. TAIR 10
Match:
AT5G11090.1 (serine-rich protein-related )
HSP 1 Score: 144.8 bits (364), Expect = 6.0e-35
Identity = 86/149 (57.72%), Postives = 108/149 (72.48%), Query Frame = 0
Query: 27 HNHRRSAS-SRVNI-SSSPMSHSVRFSLGHRSIAVSNR------------NSPVSQPCMC 86
H+H RSAS +RVN+ ++ PMS S R+SL RSI+ +N+ N +S+ CMC
Sbjct: 66 HSHHRSASPTRVNLYTAQPMSQSFRYSLDSRSISPTNKSISVSKNQPPSHNHKISRRCMC 125
Query: 87 SPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRAL 146
SPT HPGSFRCSLHKN ++ H Q ++Y++ LNMRRSAMTNSLVRIGGVEG+ V RAL
Sbjct: 126 SPTTHPGSFRCSLHKN-VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVRRAL 185
Query: 147 TALIRPSSHQQRRRANFQSRPSRLSAMSE 162
T LIRPSSH +RRA +Q RPSRLS M++
Sbjct: 186 TTLIRPSSHHLKRRAAYQPRPSRLSIMAK 213
BLAST of CmoCh12G002980 vs. TAIR 10
Match:
AT5G25280.1 (serine-rich protein-related )
HSP 1 Score: 135.6 bits (340), Expect = 3.7e-32
Identity = 82/155 (52.90%), Postives = 109/155 (70.32%), Query Frame = 0
Query: 22 NSTFFHNHRRSASSRVNI-SSSPMSHSVRFSLGHRSIAVSNRNSPVS------------- 81
N H HR ++ +RVN+ +S+PM+ S R+S+ +RSI+ NR+ VS
Sbjct: 64 NQNNHHQHRSASPTRVNLFTSAPMTQSFRYSIDNRSIS-PNRSIAVSSNKPSNHHKIPDS 123
Query: 82 -QPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGD 141
+ CMCSPT HPGSFRCSLHKN ++ H Q ++Y++ LNMRRSAMTNSLVRIGGVEG+
Sbjct: 124 RRRCMCSPTTHPGSFRCSLHKN-VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGE 183
Query: 142 LVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE 162
V RALT LIRPSSHQ +RR+ ++ R SRL++MS+
Sbjct: 184 WVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMSK 216
BLAST of CmoCh12G002980 vs. TAIR 10
Match:
AT5G25280.2 (serine-rich protein-related )
HSP 1 Score: 135.6 bits (340), Expect = 3.7e-32
Identity = 82/155 (52.90%), Postives = 109/155 (70.32%), Query Frame = 0
Query: 22 NSTFFHNHRRSASSRVNI-SSSPMSHSVRFSLGHRSIAVSNRNSPVS------------- 81
N H HR ++ +RVN+ +S+PM+ S R+S+ +RSI+ NR+ VS
Sbjct: 64 NQNNHHQHRSASPTRVNLFTSAPMTQSFRYSIDNRSIS-PNRSIAVSSNKPSNHHKIPDS 123
Query: 82 -QPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGD 141
+ CMCSPT HPGSFRCSLHKN ++ H Q ++Y++ LNMRRSAMTNSLVRIGGVEG+
Sbjct: 124 RRRCMCSPTTHPGSFRCSLHKN-VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGE 183
Query: 142 LVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE 162
V RALT LIRPSSHQ +RR+ ++ R SRL++MS+
Sbjct: 184 WVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMSK 216
BLAST of CmoCh12G002980 vs. TAIR 10
Match:
AT5G20370.1 (serine-rich protein-related )
HSP 1 Score: 68.2 bits (165), Expect = 7.2e-12
Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 0
Query: 5 TSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRF----SLGHRSIAVS 64
+S VLRPL ++ H+HR+ + S N ++ ++F S+ S+
Sbjct: 7 SSRSVLRPL--SSSQRLHNNHHHHHRQRSPSPCN---KNLNLRLKFYSPGSIPKPSVVTV 66
Query: 65 NRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRR-------------LN 124
+ N + C+CSPT HPGSFRCS H+ + +TL++ + +R LN
Sbjct: 67 SSNHQTKRKCLCSPTTHPGSFRCSFHRRLEHEK-SKTLASSTVKRNNRGDNTIRVNVGLN 126
Query: 125 MRRSAMTNSLVRIGGVEGDLVNRALTA-LIRPSSHQQRRRANFQSRPSR 156
+R+ A+ NSL +IG VE + R+L A L +PSS RR F+ R SR
Sbjct: 127 LRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSR 169
BLAST of CmoCh12G002980 vs. TAIR 10
Match:
AT3G13227.1 (serine-rich protein-related )
HSP 1 Score: 41.2 bits (95), Expect = 9.4e-04
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 0
Query: 53 GHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHK 88
G S+ +S ++S V Q C+C+PT HPGSFRC H+
Sbjct: 49 GGGSVGMS-KSSSVRQNCLCAPTTHPGSFRCRYHR 82
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GHM5 | 2.4e-84 | 100.00 | uncharacterized protein LOC111454267 OS=Cucurbita moschata OX=3662 GN=LOC1114542... | [more] |
A0A6J1K7C8 | 3.9e-50 | 68.89 | uncharacterized protein LOC111491813 OS=Cucurbita maxima OX=3661 GN=LOC111491813... | [more] |
A0A6J1HGM5 | 3.9e-50 | 67.02 | uncharacterized protein LOC111462780 OS=Cucurbita moschata OX=3662 GN=LOC1114627... | [more] |
A0A5A7VCJ2 | 1.8e-47 | 63.45 | Nuclear transcription factor Y subunit gamma-like OS=Cucumis melo var. makuwa OX... | [more] |
A0A1S3BC71 | 1.8e-47 | 63.45 | nuclear transcription factor Y subunit gamma-like OS=Cucumis melo OX=3656 GN=LOC... | [more] |