Cmc12g0318921 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0318921
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposable element protein
LocationCMiso1.1chr12: 4218808 .. 4219497 (-)
RNA-Seq ExpressionCmc12g0318921
SyntenyCmc12g0318921
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACTTAGTGGACCTTCCTATGGGAAAGAAGCCAATTAGGTGTAAGTGGATCTTCAAAAGAAAAACAAAGCCAAATGGATCTATAGATAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACTCAGAAACGAGGCATTGATTATTTTGACACATATTCCCTTATAACTAAGATAACCACAATTAGGGACTTGATTGTATTAGCTGCAATACATAGCTTTCTTATTCACCAAATGGACGTAAAAACTGCTTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTCAAATTTCTGGCCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTATACGGTCTCAAGCAAGTTCCCAAGCAGTGGTATGAAAATTTTAATTATACGTTGATAAACAATGGATTTAAAATAAATTCCTCAGACACGTGTGTTTATTCAAAAGTGTTTGGAGCTGATTGCATATTAATATGTCTATATGTTGATGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTATTTCTCTCATCACACTTTTATATATTTGTGAATGATGAACTTGGATTATATATTCTGTGGTTATGTCTCCCATCCATATTTTAG

mRNA sequence

ATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACTTAGTGGACCTTCCTATGGGAAAGAAGCCAATTAGGTGTAAGTGGATCTTCAAAAGAAAAACAAAGCCAAATGGATCTATAGATAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACTCAGAAACGAGGCATTGATTATTTTGACACATATTCCCTTATAACTAAGATAACCACAATTAGGGACTTGATTGTATTAGCTGCAATACATAGCTTTCTTATTCACCAAATGGACGTAAAAACTGCTTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTCAAATTTCTGGCCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTATACGGTCTCAAGCAAGTTCCCAAGCAGTGGTATGAAAATTTTAATTATACGTTGATAAACAATGGATTTAAAATAAATTCCTCAGACACGTGTGTTTATTCAAAAGTGTTTGGAGCTGATTGCATATTAATATGTCTATATGTTGATGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTATTTCTCTCATCACACTTTTATATATTTGTGAATGATGAACTTGGATTATATATTCTGTGGTTATGTCTCCCATCCATATTTTAG

Coding sequence (CDS)

ATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACTTAGTGGACCTTCCTATGGGAAAGAAGCCAATTAGGTGTAAGTGGATCTTCAAAAGAAAAACAAAGCCAAATGGATCTATAGATAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACTCAGAAACGAGGCATTGATTATTTTGACACATATTCCCTTATAACTAAGATAACCACAATTAGGGACTTGATTGTATTAGCTGCAATACATAGCTTTCTTATTCACCAAATGGACGTAAAAACTGCTTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTCAAATTTCTGGCCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTATACGGTCTCAAGCAAGTTCCCAAGCAGTGGTATGAAAATTTTAATTATACGTTGATAAACAATGGATTTAAAATAAATTCCTCAGACACGTGTGTTTATTCAAAAGTGTTTGGAGCTGATTGCATATTAATATGTCTATATGTTGATGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTATTTCTCTCATCACACTTTTATATATTTGTGAATGATGAACTTGGATTATATATTCTGTGGTTATGTCTCCCATCCATATTTTAG

Protein sequence

MWKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYTQKRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGFQISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNMELITDTKLFLSSHFYIFVNDELGLYILWLCLPSIF
Homology
BLAST of Cmc12g0318921 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 387.5 bits (994), Expect = 8.0e-104
Identity = 186/208 (89.42%), Postives = 195/208 (93.75%), Query Frame = 0

Query: 1    MWKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYT 60
            MWKEAIKSELDSL MNHTW+LVDLPMG KPIRCKWIFKRKTKPNG I+RYKARLVVVGYT
Sbjct: 848  MWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYT 907

Query: 61   QKRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGF 120
            QK+G+DYFDTYS +TKITTIR LI LAAIH+ LIHQMDVKTAFLNG+LEEEIYMTQPEGF
Sbjct: 908  QKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGNLEEEIYMTQPEGF 967

Query: 121  QISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILI 180
            +ISGQENKVCKLRKSLYGLKQ PKQWYE FN TLI NGFKINSSDTCVYSK+ GADCILI
Sbjct: 968  KISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGADCILI 1027

Query: 181  CLYVDDMLIFGTNMELITDTKLFLSSHF 209
            CLYVDDMLIFGTNMELITDTK FLSSHF
Sbjct: 1028 CLYVDDMLIFGTNMELITDTKYFLSSHF 1055

BLAST of Cmc12g0318921 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha])

HSP 1 Score: 303.9 bits (777), Expect = 1.2e-78
Identity = 143/208 (68.75%), Postives = 172/208 (82.69%), Query Frame = 0

Query: 1   MWKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYT 60
           +WKEAIKSE+DS++ NHTW+L DLP G KPI  KWIFK+K +P+G++D+YKARLV+ G+T
Sbjct: 199 LWKEAIKSEVDSILSNHTWELTDLPKGNKPIGSKWIFKKKLRPDGTVDKYKARLVIRGFT 258

Query: 61  QKRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGF 120
           QK G+DYFDTYS +TKITTIR LI +AAI+  LIHQMDVKTAFLNGDL+EEIYM QPEGF
Sbjct: 259 QKHGLDYFDTYSPVTKITTIRSLISIAAINGLLIHQMDVKTAFLNGDLDEEIYMLQPEGF 318

Query: 121 QISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILI 180
            +SG E+KVCKLRKSLYGLKQ PK+WYE F+ TL  +G+ +N+SD+CVYSK      +LI
Sbjct: 319 VVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQDGYIVNNSDSCVYSKRSKTGYVLI 378

Query: 181 CLYVDDMLIFGTNMELITDTKLFLSSHF 209
           CLYVDDMLIFG +M  I  TK FLSS F
Sbjct: 379 CLYVDDMLIFGADMHDINQTKAFLSSKF 406

BLAST of Cmc12g0318921 vs. NCBI nr
Match: KAG7551885.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 295.0 bits (754), Expect = 5.4e-76
Identity = 135/207 (65.22%), Postives = 167/207 (80.68%), Query Frame = 0

Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYTQ 61
            WKEA+ +E DS++ NHTW++VDLP G K IRCKWI K+K K +GSID++KARLV  G+ Q
Sbjct: 821  WKEAVNNEFDSIMTNHTWEIVDLPRGCKAIRCKWILKKKFKADGSIDKFKARLVAQGFAQ 880

Query: 62   KRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGFQ 121
            K+G+DYFDTY+ +TKI +IR L+ +A+ H  ++HQMDVKTAFLNGDL EEIYM QPEGF 
Sbjct: 881  KQGVDYFDTYAPVTKIASIRMLLAVASAHKLVVHQMDVKTAFLNGDLHEEIYMMQPEGFI 940

Query: 122  ISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILIC 181
            I GQENKVCKL KSLYGLKQ PKQW+E F+ TL+ NGF  N  DTCV+SKV     ++IC
Sbjct: 941  IEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLENGFVSNEGDTCVFSKVHEHGYVIIC 1000

Query: 182  LYVDDMLIFGTNMELITDTKLFLSSHF 209
            LYVDDMLI GT++E++ DTK+FLSS F
Sbjct: 1001 LYVDDMLILGTSLEIVCDTKVFLSSKF 1027

BLAST of Cmc12g0318921 vs. NCBI nr
Match: KAG7592238.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 295.0 bits (754), Expect = 5.4e-76
Identity = 135/207 (65.22%), Postives = 167/207 (80.68%), Query Frame = 0

Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYTQ 61
            WKEA+ +E DS++ NHTW++VDLP G K IRCKWI K+K K +GSID++KARLV  G+ Q
Sbjct: 821  WKEAVNNEFDSIMTNHTWEIVDLPRGCKAIRCKWILKKKFKADGSIDKFKARLVAQGFAQ 880

Query: 62   KRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGFQ 121
            K+G+DYFDTY+ +TKI +IR L+ +A+ H  ++HQMDVKTAFLNGDL EEIYM QPEGF 
Sbjct: 881  KQGVDYFDTYAPVTKIASIRMLLAVASAHKLVVHQMDVKTAFLNGDLHEEIYMMQPEGFI 940

Query: 122  ISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILIC 181
            I GQENKVCKL KSLYGLKQ PKQW+E F+ TL+ NGF  N  DTCV+SKV     ++IC
Sbjct: 941  IEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLENGFVSNEGDTCVFSKVHEHGYVIIC 1000

Query: 182  LYVDDMLIFGTNMELITDTKLFLSSHF 209
            LYVDDMLI GT++E++ DTK+FLSS F
Sbjct: 1001 LYVDDMLILGTSLEIVCDTKVFLSSKF 1027

BLAST of Cmc12g0318921 vs. NCBI nr
Match: KAG7571733.1 (Integrase catalytic core [Arabidopsis suecica])

HSP 1 Score: 295.0 bits (754), Expect = 5.4e-76
Identity = 135/207 (65.22%), Postives = 167/207 (80.68%), Query Frame = 0

Query: 2   WKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYTQ 61
           WKEA+ +E DS++ NHTW++VDLP G K IRCKWI K+K K +GSID++KARLV  G+ Q
Sbjct: 790 WKEAVNNEFDSIMTNHTWEIVDLPRGCKAIRCKWILKKKFKADGSIDKFKARLVAQGFAQ 849

Query: 62  KRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGFQ 121
           K+G+DYFDTY+ +TKI +IR L+ +A+ H  ++HQMDVKTAFLNGDL EEIYM QPEGF 
Sbjct: 850 KQGVDYFDTYAPVTKIASIRMLLAVASAHKLVVHQMDVKTAFLNGDLHEEIYMMQPEGFI 909

Query: 122 ISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILIC 181
           I GQENKVCKL KSLYGLKQ PKQW+E F+ TL+ NGF  N  DTCV+SKV     ++IC
Sbjct: 910 IEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLENGFVSNEGDTCVFSKVHEHGYVIIC 969

Query: 182 LYVDDMLIFGTNMELITDTKLFLSSHF 209
           LYVDDMLI GT++E++ DTK+FLSS F
Sbjct: 970 LYVDDMLILGTSLEIVCDTKVFLSSKF 996

BLAST of Cmc12g0318921 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.3e-52
Identity = 104/206 (50.49%), Postives = 145/206 (70.39%), Query Frame = 0

Query: 4    EAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYTQKR 63
            +A++ E++SL  N T+ LV+LP GK+P++CKW+FK K   +  + RYKARLVV G+ QK+
Sbjct: 828  KAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKK 887

Query: 64   GIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGFQIS 123
            GID+ + +S + K+T+IR ++ LAA     + Q+DVKTAFL+GDLEEEIYM QPEGF+++
Sbjct: 888  GIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVA 947

Query: 124  GQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGA-DCILICL 183
            G+++ VCKL KSLYGLKQ P+QWY  F+  + +  +    SD CVY K F   + I++ L
Sbjct: 948  GKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLL 1007

Query: 184  YVDDMLIFGTNMELITDTKLFLSSHF 209
            YVDDMLI G +  LI   K  LS  F
Sbjct: 1008 YVDDMLIVGKDKGLIAKLKGDLSKSF 1033

BLAST of Cmc12g0318921 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.3e-44
Identity = 93/220 (42.27%), Postives = 138/220 (62.73%), Query Frame = 0

Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGKKPI-RCKWIFKRKTKPNGSIDRYKARLVVVGYT 61
            W+ A+ SE+++ + NHTWDLV  P     I  C+WIF +K   +GS++RYKARLV  GY 
Sbjct: 968  WRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYN 1027

Query: 62   QKRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGF 121
            Q+ G+DY +T+S + K T+IR ++ +A   S+ I Q+DV  AFL G L +++YM+QP GF
Sbjct: 1028 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGF 1087

Query: 122  QISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILI 181
                + N VCKLRK+LYGLKQ P+ WY      L+  GF  + SDT ++    G   + +
Sbjct: 1088 IDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYM 1147

Query: 182  CLYVDDMLIFGTNMELITDTKLFLSSHFYIFVNDELGLYI 221
             +YVDD+LI G +  L+ +T   LS  F +  ++EL  ++
Sbjct: 1148 LVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFL 1187

BLAST of Cmc12g0318921 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.2e-43
Identity = 91/220 (41.36%), Postives = 138/220 (62.73%), Query Frame = 0

Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGKKPI-RCKWIFKRKTKPNGSIDRYKARLVVVGYT 61
            W++A+ SE+++ + NHTWDLV  P     I  C+WIF +K   +GS++RYKARLV  GY 
Sbjct: 951  WRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYN 1010

Query: 62   QKRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGF 121
            Q+ G+DY +T+S + K T+IR ++ +A   S+ I Q+DV  AFL G L +E+YM+QP GF
Sbjct: 1011 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGF 1070

Query: 122  QISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILI 181
                + + VC+LRK++YGLKQ P+ WY      L+  GF  + SDT ++    G   I +
Sbjct: 1071 VDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYM 1130

Query: 182  CLYVDDMLIFGTNMELITDTKLFLSSHFYIFVNDELGLYI 221
             +YVDD+LI G +  L+  T   LS  F +  +++L  ++
Sbjct: 1131 LVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFL 1170

BLAST of Cmc12g0318921 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-37
Identity = 88/221 (39.82%), Postives = 133/221 (60.18%), Query Frame = 0

Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYTQ 61
            W+EAI +EL++  +N+TW +   P  K  +  +W+F  K    G+  RYKARLV  G+TQ
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 62   KRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGFQ 121
            K  IDY +T++ + +I++ R ++ L   ++  +HQMDVKTAFLNG L+EEIYM  P+G  
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG-- 1025

Query: 122  ISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFG--ADCIL 181
            IS   + VCKL K++YGLKQ  + W+E F   L    F  +S D C+Y    G   + I 
Sbjct: 1026 ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIY 1085

Query: 182  ICLYVDDMLIFGTNMELITDTKLFLSSHFYIFVNDELGLYI 221
            + LYVDD++I   +M  + + K +L   F +   +E+  +I
Sbjct: 1086 VLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFI 1124

BLAST of Cmc12g0318921 vs. ExPASy Swiss-Prot
Match: Q12472 (Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR1 PE=1 SV=3)

HSP 1 Score: 86.3 bits (212), Expect = 5.0e-16
Identity = 67/215 (31.16%), Postives = 104/215 (48.37%), Query Frame = 0

Query: 4    EAIKSELDSLVMNHTWDL--------VDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLV 63
            EA   E++ L+  +TWD         +D    KK I   +IF +K         +KAR V
Sbjct: 1267 EAYHKEINQLLRMNTWDTNKYYDRNDID---PKKVINSMFIFNKKRD-----GTHKARFV 1326

Query: 64   VVGYTQKRGIDYFDTYSLITKITTIRDLIVLAAI-----HSFLIHQMDVKTAFLNGDLEE 123
              G      I + DTY    +  T+    ++ ++     + + I Q+D+ +A+L  D++E
Sbjct: 1327 ARG-----DIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKE 1386

Query: 124  EIYMTQPEGFQISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYS 183
            E+Y+  P      G  +K+ +LRKSLYGLKQ    WYE     LIN     +  +   +S
Sbjct: 1387 ELYIRPPPHL---GLNDKLLRLRKSLYGLKQSGANWYETIKSYLIN---CCDMQEVRGWS 1446

Query: 184  KVFGADCILICLYVDDMLIF----GTNMELITDTK 202
             VF    + ICL+VDDM++F      N ++IT  K
Sbjct: 1447 CVFKNSQVTICLFVDDMILFSKDLNANKKIITTLK 1462

BLAST of Cmc12g0318921 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.9e-104
Identity = 186/208 (89.42%), Postives = 195/208 (93.75%), Query Frame = 0

Query: 1    MWKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYT 60
            MWKEAIKSELDSL MNHTW+LVDLPMG KPIRCKWIFKRKTKPNG I+RYKARLVVVGYT
Sbjct: 848  MWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYT 907

Query: 61   QKRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGF 120
            QK+G+DYFDTYS +TKITTIR LI LAAIH+ LIHQMDVKTAFLNG+LEEEIYMTQPEGF
Sbjct: 908  QKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGNLEEEIYMTQPEGF 967

Query: 121  QISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILI 180
            +ISGQENKVCKLRKSLYGLKQ PKQWYE FN TLI NGFKINSSDTCVYSK+ GADCILI
Sbjct: 968  KISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGADCILI 1027

Query: 181  CLYVDDMLIFGTNMELITDTKLFLSSHF 209
            CLYVDDMLIFGTNMELITDTK FLSSHF
Sbjct: 1028 CLYVDDMLIFGTNMELITDTKYFLSSHF 1055

BLAST of Cmc12g0318921 vs. ExPASy TrEMBL
Match: A0A5N6PGV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08640 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 5.6e-79
Identity = 143/208 (68.75%), Postives = 172/208 (82.69%), Query Frame = 0

Query: 1   MWKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYT 60
           +WKEAIKSE+DS++ NHTW+L DLP G KPI  KWIFK+K +P+G++D+YKARLV+ G+T
Sbjct: 199 LWKEAIKSEVDSILSNHTWELTDLPKGNKPIGSKWIFKKKLRPDGTVDKYKARLVIRGFT 258

Query: 61  QKRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGF 120
           QK G+DYFDTYS +TKITTIR LI +AAI+  LIHQMDVKTAFLNGDL+EEIYM QPEGF
Sbjct: 259 QKHGLDYFDTYSPVTKITTIRSLISIAAINGLLIHQMDVKTAFLNGDLDEEIYMLQPEGF 318

Query: 121 QISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILI 180
            +SG E+KVCKLRKSLYGLKQ PK+WYE F+ TL  +G+ +N+SD+CVYSK      +LI
Sbjct: 319 VVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQDGYIVNNSDSCVYSKRSKTGYVLI 378

Query: 181 CLYVDDMLIFGTNMELITDTKLFLSSHF 209
           CLYVDDMLIFG +M  I  TK FLSS F
Sbjct: 379 CLYVDDMLIFGADMHDINQTKAFLSSKF 406

BLAST of Cmc12g0318921 vs. ExPASy TrEMBL
Match: A0A2N9EQT1 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4851 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.3e-78
Identity = 140/207 (67.63%), Postives = 173/207 (83.57%), Query Frame = 0

Query: 2   WKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYTQ 61
           WK+AI SEL+S++ NHTW+LV+LP G K I  KW+FK+K K +GSI+++KARLV  GYTQ
Sbjct: 288 WKDAIHSELESIMGNHTWELVELPRGCKTIGSKWVFKKKLKADGSIEKFKARLVAKGYTQ 347

Query: 62  KRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGFQ 121
           K GIDYFDTYS +T++TTIR L+ +A+I+  +IHQMDVKTAFLNGDL+EEIYM QPEGF 
Sbjct: 348 KEGIDYFDTYSPVTRLTTIRILVAIASIYKLIIHQMDVKTAFLNGDLDEEIYMDQPEGFV 407

Query: 122 ISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILIC 181
           + GQENKVCKLRKSLYGLKQ PKQW+E F+ TL++NGF +N SD CVYSK  GA  ++IC
Sbjct: 408 VQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVSNGFAVNESDRCVYSKFSGASGVIIC 467

Query: 182 LYVDDMLIFGTNMELITDTKLFLSSHF 209
           LYVDDMLIFGT+M  + +TK FLSS+F
Sbjct: 468 LYVDDMLIFGTDMNAVKNTKDFLSSNF 494

BLAST of Cmc12g0318921 vs. ExPASy TrEMBL
Match: A0A2N9H4B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.3e-78
Identity = 140/207 (67.63%), Postives = 173/207 (83.57%), Query Frame = 0

Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYTQ 61
            WK+AI SEL+S++ NHTW+LV+LP G K I  KW+FK+K K +GSI+++KARLV  GYTQ
Sbjct: 798  WKDAIHSELESIMGNHTWELVELPRGCKTIGSKWVFKKKLKADGSIEKFKARLVAKGYTQ 857

Query: 62   KRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGFQ 121
            K GIDYFDTYS +T++TTIR L+ +A+I+  +IHQMDVKTAFLNGDL+EEIYM QPEGF 
Sbjct: 858  KEGIDYFDTYSPVTRLTTIRILVAIASIYKLIIHQMDVKTAFLNGDLDEEIYMDQPEGFV 917

Query: 122  ISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILIC 181
            + GQENKVCKLRKSLYGLKQ PKQW+E F+ TL++NGF +N SD CVYSK  GA  ++IC
Sbjct: 918  VQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVSNGFAVNESDRCVYSKFSGASGVIIC 977

Query: 182  LYVDDMLIFGTNMELITDTKLFLSSHF 209
            LYVDDMLIFGT+M  + +TK FLSS+F
Sbjct: 978  LYVDDMLIFGTDMNAVKNTKDFLSSNF 1004

BLAST of Cmc12g0318921 vs. ExPASy TrEMBL
Match: A0A151TB60 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_018881 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.9e-75
Identity = 134/207 (64.73%), Postives = 170/207 (82.13%), Query Frame = 0

Query: 2   WKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYTQ 61
           WKEAI+ E+DS+  N+TW LVDLP G KPI CKWIFKRK  P+GSI++YKARLV  G+TQ
Sbjct: 506 WKEAIRIEIDSIKENNTWTLVDLPKGAKPIGCKWIFKRKYNPDGSIEKYKARLVAKGFTQ 565

Query: 62  KRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGFQ 121
           K+ ID+FDT++ + +I++IR LI LA+IH  +IHQMDVKTAFLNG+LEEEIYMTQPEG +
Sbjct: 566 KQDIDFFDTFAPVARISSIRVLIALASIHRLVIHQMDVKTAFLNGELEEEIYMTQPEGCE 625

Query: 122 ISGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGADCILIC 181
           + GQENKVC+L KSLYGLKQ PKQW+E F+  L+N+GF  +S+D CVY+K    DC++IC
Sbjct: 626 VPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLNDGFSSSSADKCVYTKSMNDDCVIIC 685

Query: 182 LYVDDMLIFGTNMELITDTKLFLSSHF 209
           LYVDDMLIFGT  +++  TK FL+S+F
Sbjct: 686 LYVDDMLIFGTCDDIVFKTKSFLASNF 712

BLAST of Cmc12g0318921 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 189.5 bits (480), Expect = 3.0e-48
Identity = 90/212 (42.45%), Postives = 137/212 (64.62%), Query Frame = 0

Query: 1   MWKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYT 60
           +W  A+  E+ ++   HTW++  LP  KKPI CKW++K K   +G+I+RYKARLV  GYT
Sbjct: 97  VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYT 156

Query: 61  QKRGIDYFDTYSLITKITTIRDLIVLAAIHSFLIHQMDVKTAFLNGDLEEEIYMTQPEGF 120
           Q+ GID+ +T+S + K+T+++ ++ ++AI++F +HQ+D+  AFLNGDL+EEIYM  P G+
Sbjct: 157 QQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

Query: 121 QI----SGQENKVCKLRKSLYGLKQVPKQWYENFNYTLINNGFKINSSDTCVYSKVFGAD 180
                 S   N VC L+KS+YGLKQ  +QW+  F+ TLI  GF  + SD   + K+    
Sbjct: 217 AARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATL 276

Query: 181 CILICLYVDDMLIFGTNMELITDTKLFLSSHF 209
            + + +YVDD++I   N   + + K  L S F
Sbjct: 277 FLCVLVYVDDIIICSNNDAAVDELKSQLKSCF 308

BLAST of Cmc12g0318921 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-16
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 2   WKEAIKSELDSLVMNHTWDLVDLPMGKKPIRCKWIFKRKTKPNGSIDRYKARLVVVGYTQ 61
           W +A++ ELD+L  N TW LV  P+ +  + CKW+FK K   +G++DR KARLV  G+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 62  KRGIDYFDTYSLITKITTIRDLIVLA 88
           + GI + +TYS + +  TIR ++ +A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK06518.18.0e-10489.42ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAD6453934.11.2e-7868.75hypothetical protein E3N88_08640 [Mikania micrantha][more]
KAG7551885.15.4e-7665.22Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAG7592238.15.4e-7665.22Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAG7571733.15.4e-7665.22Integrase catalytic core [Arabidopsis suecica][more]
Match NameE-valueIdentityDescription
P109783.3e-5250.49Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q94HW24.3e-4442.27Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT942.2e-4341.36Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041461.8e-3739.82Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q124725.0e-1631.16Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
Match NameE-valueIdentityDescription
A0A5D3C5T23.9e-10489.42Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5N6PGV25.6e-7968.75Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran... [more]
A0A2N9EQT11.3e-7867.63Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9H4B01.3e-7867.63Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1[more]
A0A151TB604.9e-7564.73Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
Match NameE-valueIdentityDescription
AT4G23160.13.0e-4842.45cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.13.9e-1643.02Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 16..210
e-value: 5.5E-65
score: 219.3
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 2..206
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 16..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0318921.1Cmc12g0318921.1mRNA