Cmc10g0281921 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0281921
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr10: 20888648 .. 20889352 (+)
RNA-Seq Expression	Cmc10g0281921
Synteny	Cmc10g0281921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCAGATCGGGAGATTGGTAAAGAATGGACTTCTAAACGAGTTTAAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAACCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCGTCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGATAAGTTCAAGGAGTATAAAGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCAATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGATTATATGATAAAACATGGAATCGAATCTCAACTCTCAGCACCTGGTACACCTCAACAAAATAGTGTATCAGAAATGAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTATGCTCAATTGCCTAGCTTGTTTTGGGGGTATGCAGTAGAGACTACTGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGTTATAG

mRNA sequence

ATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCAGATCGGGAGATTGGTAAAGAATGGACTTCTAAACGAGTTTAAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAACCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCGTCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGATAAGTTCAAGGAGTATAAAGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCAATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGATTATATGATAAAACATGGAATCGAATCTCAACTCTCAGCACCTGGTACACCTCAACAAAATAGTGTATCAGAAATGAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTATGCTCAATTGCCTAGCTTGTTTTGGGGGTATGCAGTAGAGACTACTGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGTTATAG

Coding sequence (CDS)

ATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCAGATCGGGAGATTGGTAAAGAATGGACTTCTAAACGAGTTTAAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAACCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCGTCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGATAAGTTCAAGGAGTATAAAGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCAATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGATTATATGATAAAACATGGAATCGAATCTCAACTCTCAGCACCTGGTACACCTCAACAAAATAGTGTATCAGAAATGAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTATGCTCAATTGCCTAGCTTGTTTTGGGGGTATGCAGTAGAGACTACTGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGTTATAG

Protein sequence

MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHKSEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQNSVSEMRNRTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPSKSVSETPFEL

Homology

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BLAST of Cmc10g0281921 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 456.4 bits (1173), Expect = 1.4e-124
Identity = 220/234 (94.02%), Postives = 227/234 (97.01%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNNNTYLWHLRLGHINLD+IGRLVKNGLLN+ KD SLPPCESCLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHK 120
           GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYF+SFIDDYSRYGYLYLMEHK
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQN 180
           SEAL+KFKEYK EVENLLSKKIKIL+SDRGGEYMDLRFQDYMI+HGI+SQLSAPGTPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 SVSEMRNRTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPSKSVSETPFEL 235
            VSE RNRTLLDMVRSMMSYAQLPS FWGYAVET VHILNNVPSKSVSETPFEL
Sbjct: 509 GVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFEL 562

[Close]

BLAST of Cmc10g0281921 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 447.6 bits (1150), Expect = 6.7e-122
Identity = 216/234 (92.31%), Postives = 224/234 (95.73%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNNNTYLWHLRLGHINLD+IGRLVK+GLLN+ KD SLPPCESCLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHK 120
           GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG FEYF+SFIDDYSRYGYLYLMEHK
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQN 180
           SEAL+KFKEYK EVENLLSKKIKI +SDRGGEYMDL FQDYMI+HGI+SQLSAPGTPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKIFRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 SVSEMRNRTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPSKSVSETPFEL 235
            VSE RNRTLLDMVRSMMSYAQLPS FWGYAVET VHILNNVPSKSVSETPFEL
Sbjct: 509 GVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFEL 562

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BLAST of Cmc10g0281921 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 441.4 bits (1134), Expect = 4.8e-120
Identity = 212/234 (90.60%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLE 60
           MFRTANTQNKRQRIS NNNTYLWHLRLGHINLD+IGRLVKNGLLN+ +DDSLPPCESCLE
Sbjct: 301 MFRTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLE 360

Query: 61  GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHK 120
           GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA GGFEYF+SFIDDYS YGYLYL+EHK
Sbjct: 361 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHK 420

Query: 121 SEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQN 180
           SEAL+KFKEYK EVENLLSKKIKIL+SDRGGEYMDLRFQDYMI+HGI+SQLSAPGTPQQN
Sbjct: 421 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 480

Query: 181 SVSEMRNRTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPSKSVSETPFEL 235
            VSE RNRTLLDMV SMMSY QLPS FWGYAVET VHILNNVPSK+V ETPFEL
Sbjct: 481 GVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVETAVHILNNVPSKNVFETPFEL 534

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BLAST of Cmc10g0281921 vs. NCBI nr
Match: KAA0065386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 430.6 bits (1106), Expect = 8.4e-117
Identity = 210/234 (89.74%), Postives = 219/234 (93.59%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNN TYLWHLRLGHINLDQIGRLVKNGLLN+ +DDSLPPCES LE
Sbjct: 182 MFRTANTQNKRQRISPNNGTYLWHLRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLE 241

Query: 61  GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHK 120
           GKMTKRPF GKGYRAKEPLELIHSDL GPMNVKAR GFEYF+SFIDDYSRYGYLYLMEHK
Sbjct: 242 GKMTKRPFIGKGYRAKEPLELIHSDLYGPMNVKAREGFEYFISFIDDYSRYGYLYLMEHK 301

Query: 121 SEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQN 180
           SEAL+K KEY+ EVENLLS+KIKIL+SDRGGEYMDLRFQDYMI+HGI+SQLSA GTPQQN
Sbjct: 302 SEALEKLKEYETEVENLLSEKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSALGTPQQN 361

Query: 181 SVSEMRNRTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPSKSVSETPFEL 235
            VSE RNRTLLDMVRSMMSYAQ PS FWGYAVET VHILNNVPSKSVSE PFEL
Sbjct: 362 GVSERRNRTLLDMVRSMMSYAQFPSSFWGYAVETAVHILNNVPSKSVSEPPFEL 415

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BLAST of Cmc10g0281921 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 405.2 bits (1040), Expect = 3.8e-109
Identity = 194/209 (92.82%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNNNTYLWHLRL HINLD+IGRLVKNGLLN+ KDDSLPPCESCLE
Sbjct: 299 MFRTANTQNKRQRISPNNNTYLWHLRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLE 358

Query: 61  GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHK 120
           GKMTKRPFTGK YRAKEPLELIHSDLCGPMNVKARGGFEYF+SFIDDYSRYGYLYLMEHK
Sbjct: 359 GKMTKRPFTGKDYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 418

Query: 121 SEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQN 180
            EAL+KFKEYK EVENLLSKKIKIL+SDRGGEYMDLRFQDYMI+HGI+SQLSAPGTPQQN
Sbjct: 419 YEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 478

Query: 181 SVSEMRNRTLLDMVRSMMSYAQLPSLFWG 210
            VSE RNRTLLDMVRSMMSYAQLPS FWG
Sbjct: 479 GVSERRNRTLLDMVRSMMSYAQLPSSFWG 507

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BLAST of Cmc10g0281921 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.8e-45
Identity = 84/203 (41.38%), Postives = 129/203 (63.55%), Query Frame = 0


Query: 22  LWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLEL 81
           LWH R+GH++   +  L K  L++  K  ++ PC+ CL GK  +  F     R    L+L
Sbjct: 424 LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDL 483

Query: 82  IHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHKSEALDKFKEYKAEVENLLSKK 141
           ++SD+CGPM +++ GG +YFV+FIDD SR  ++Y+++ K +    F+++ A VE    +K
Sbjct: 484 VYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRK 543

Query: 142 IKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQNSVSEMRNRTLLDMVRSMMSYA 201
           +K L+SD GGEY    F++Y   HGI  + + PGTPQ N V+E  NRT+++ VRSM+  A
Sbjct: 544 LKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMA 603

Query: 202 QLPSLFWGYAVETTVHILNNVPS 225
           +LP  FWG AV+T  +++N  PS
Sbjct: 604 KLPKSFWGEAVQTACYLINRSPS 626

[Close]

BLAST of Cmc10g0281921 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 152.1 bits (383), Expect = 7.6e-36
Identity = 84/230 (36.52%), Postives = 127/230 (55.22%), Query Frame = 0


Query: 18  NNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSL--------PPCESCLEGKMTKRPFT 77
           NN  LWH R GHI+    G+L++    N F D SL          CE CL GK  + PF 
Sbjct: 413 NNFRLWHERFGHIS---DGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFK 472

Query: 78  GKGYRA--KEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHKSEALDKF 137
               +   K PL ++HSD+CGP+         YFV F+D ++ Y   YL+++KS+    F
Sbjct: 473 QLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMF 532

Query: 138 KEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQNSVSEMRN 197
           +++ A+ E   + K+  L  D G EY+    + + +K GI   L+ P TPQ N VSE   
Sbjct: 533 QDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMI 592

Query: 198 RTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPSKSV---SETPFEL 235
           RT+ +  R+M+S A+L   FWG AV T  +++N +PS+++   S+TP+E+
Sbjct: 593 RTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEM 639

[Close]

BLAST of Cmc10g0281921 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-31
Identity = 72/213 (33.80%), Postives = 121/213 (56.81%), Query Frame = 0


Query: 23  WHLRLGHINLDQIGRLVKNGLLNEFK-DDSLPPCESCLEGKMTKRPFTGKGYRAKEPLEL 82
           WH RLGH +L  +  ++ N  L        L  C  C   K  K PF+     + +PLE 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 83  IHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHKSEALDKFKEYKAEVENLLSKK 142
           I+SD+     + +   + Y+V F+D ++RY +LY ++ KS+  D F  +K+ VEN    +
Sbjct: 506 IYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 565

Query: 143 IKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQNSVSEMRNRTLLDMVRSMMSYA 202
           I  L SD GGE++ LR  DY+ +HGI    S P TP+ N +SE ++R +++M  +++S+A
Sbjct: 566 IGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHA 625

Query: 203 QLPSLFWGYAVETTVHILNNVPSKSVS-ETPFE 234
            +P  +W YA    V+++N +P+  +  ++PF+
Sbjct: 626 SVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQ 655

[Close]

BLAST of Cmc10g0281921 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.8e-28
Identity = 66/213 (30.99%), Postives = 114/213 (53.52%), Query Frame = 0


Query: 23  WHLRLGHINLDQIGRLVKNGLLNEFK-DDSLPPCESCLEGKMTKRPFTGKGYRAKEPLEL 82
           WH RLGH     +  ++ N  L+          C  CL  K  K PF+     +  PLE 
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 526

Query: 83  IHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHKSEALDKFKEYKAEVENLLSKK 142
           I+SD+     + +   + Y+V F+D ++RY +LY ++ KS+  + F  +K  +EN    +
Sbjct: 527 IYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTR 586

Query: 143 IKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQNSVSEMRNRTLLDMVRSMMSYA 202
           I    SD GGE++ L   +Y  +HGI    S P TP+ N +SE ++R +++   +++S+A
Sbjct: 587 IGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 646

Query: 203 QLPSLFWGYAVETTVHILNNVPSKSVS-ETPFE 234
            +P  +W YA    V+++N +P+  +  E+PF+
Sbjct: 647 SIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQ 676

[Close]

BLAST of Cmc10g0281921 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-21
Identity = 70/236 (29.66%), Postives = 115/236 (48.73%), Query Frame = 0


Query: 4   TANTQNKRQRISPNNNTY-LWHLRLGHINLDQIGRLVKNGLLNEFKDDSLP-------PC 63
           T N  NK +  S N   Y L H  LGH N   I + +K   +   K+  +         C
Sbjct: 576 TINNVNKSK--SVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQC 635

Query: 64  ESCLEGKMTKRPFTGKGYRAK-----EPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSR 123
             CL GK TK     KG R K     EP + +H+D+ GP++   +    YF+SF D+ +R
Sbjct: 636 PDCLIGKSTKHRHV-KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTR 695

Query: 124 YGYLYLMEHKSE--ALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIE 183
           + ++Y +  + E   L+ F    A ++N  + ++ ++Q DRG EY +     +    GI 
Sbjct: 696 FQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGIT 755

Query: 184 SQLSAPGTPQQNSVSEMRNRTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPS 225
           +  +     + + V+E  NRTLL+  R+++  + LP+  W  AVE +  I N++ S
Sbjct: 756 ACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc10g0281921 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 6.9e-125
Identity = 220/234 (94.02%), Postives = 227/234 (97.01%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNNNTYLWHLRLGHINLD+IGRLVKNGLLN+ KD SLPPCESCLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHK 120
           GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYF+SFIDDYSRYGYLYLMEHK
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQN 180
           SEAL+KFKEYK EVENLLSKKIKIL+SDRGGEYMDLRFQDYMI+HGI+SQLSAPGTPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 SVSEMRNRTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPSKSVSETPFEL 235
            VSE RNRTLLDMVRSMMSYAQLPS FWGYAVET VHILNNVPSKSVSETPFEL
Sbjct: 509 GVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFEL 562

[Close]

BLAST of Cmc10g0281921 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.2e-122
Identity = 216/234 (92.31%), Postives = 224/234 (95.73%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNNNTYLWHLRLGHINLD+IGRLVK+GLLN+ KD SLPPCESCLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHK 120
           GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG FEYF+SFIDDYSRYGYLYLMEHK
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQN 180
           SEAL+KFKEYK EVENLLSKKIKI +SDRGGEYMDL FQDYMI+HGI+SQLSAPGTPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKIFRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 SVSEMRNRTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPSKSVSETPFEL 235
            VSE RNRTLLDMVRSMMSYAQLPS FWGYAVET VHILNNVPSKSVSETPFEL
Sbjct: 509 GVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFEL 562

[Close]

BLAST of Cmc10g0281921 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 2.3e-120
Identity = 212/234 (90.60%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLE 60
           MFRTANTQNKRQRIS NNNTYLWHLRLGHINLD+IGRLVKNGLLN+ +DDSLPPCESCLE
Sbjct: 301 MFRTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLE 360

Query: 61  GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHK 120
           GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA GGFEYF+SFIDDYS YGYLYL+EHK
Sbjct: 361 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHK 420

Query: 121 SEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQN 180
           SEAL+KFKEYK EVENLLSKKIKIL+SDRGGEYMDLRFQDYMI+HGI+SQLSAPGTPQQN
Sbjct: 421 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 480

Query: 181 SVSEMRNRTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPSKSVSETPFEL 235
            VSE RNRTLLDMV SMMSY QLPS FWGYAVET VHILNNVPSK+V ETPFEL
Sbjct: 481 GVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVETAVHILNNVPSKNVFETPFEL 534

[Close]

BLAST of Cmc10g0281921 vs. ExPASy TrEMBL
Match: A0A5A7VGC7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00530 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.1e-117
Identity = 210/234 (89.74%), Postives = 219/234 (93.59%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNN TYLWHLRLGHINLDQIGRLVKNGLLN+ +DDSLPPCES LE
Sbjct: 182 MFRTANTQNKRQRISPNNGTYLWHLRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLE 241

Query: 61  GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHK 120
           GKMTKRPF GKGYRAKEPLELIHSDL GPMNVKAR GFEYF+SFIDDYSRYGYLYLMEHK
Sbjct: 242 GKMTKRPFIGKGYRAKEPLELIHSDLYGPMNVKAREGFEYFISFIDDYSRYGYLYLMEHK 301

Query: 121 SEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQN 180
           SEAL+K KEY+ EVENLLS+KIKIL+SDRGGEYMDLRFQDYMI+HGI+SQLSA GTPQQN
Sbjct: 302 SEALEKLKEYETEVENLLSEKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSALGTPQQN 361

Query: 181 SVSEMRNRTLLDMVRSMMSYAQLPSLFWGYAVETTVHILNNVPSKSVSETPFEL 235
            VSE RNRTLLDMVRSMMSYAQ PS FWGYAVET VHILNNVPSKSVSE PFEL
Sbjct: 362 GVSERRNRTLLDMVRSMMSYAQFPSSFWGYAVETAVHILNNVPSKSVSEPPFEL 415

[Close]

BLAST of Cmc10g0281921 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.8e-109
Identity = 194/209 (92.82%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNNNTYLWHLRL HINLD+IGRLVKNGLLN+ KDDSLPPCESCLE
Sbjct: 299 MFRTANTQNKRQRISPNNNTYLWHLRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLE 358

Query: 61  GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFVSFIDDYSRYGYLYLMEHK 120
           GKMTKRPFTGK YRAKEPLELIHSDLCGPMNVKARGGFEYF+SFIDDYSRYGYLYLMEHK
Sbjct: 359 GKMTKRPFTGKDYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 418

Query: 121 SEALDKFKEYKAEVENLLSKKIKILQSDRGGEYMDLRFQDYMIKHGIESQLSAPGTPQQN 180
            EAL+KFKEYK EVENLLSKKIKIL+SDRGGEYMDLRFQDYMI+HGI+SQLSAPGTPQQN
Sbjct: 419 YEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 478

Query: 181 SVSEMRNRTLLDMVRSMMSYAQLPSLFWG 210
            VSE RNRTLLDMVRSMMSYAQLPS FWG
Sbjct: 479 GVSERRNRTLLDMVRSMMSYAQLPSSFWG 507

[Close]

BLAST of Cmc10g0281921 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-10
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 18  NNTYLWHLRLGHINLDQIGRLVKNGLLNEFKDDSLPPCESCLEGKMTKRPFTGKGYRAKE 77
           + T LWH RL H++   +  LVK G L+  K  SL  CE C+ GK  +  F+   +  K 
Sbjct: 67  DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126

Query: 78  PLELIHSDLCGPMNV 93
           PL+ +HSDL G  +V
Sbjct: 127 PLDYVHSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Cmc10g0281921 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	1.4e-124	94.02	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	6.7e-122	92.31	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	4.8e-120	90.60	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0065386.1	8.4e-117	89.74	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0067938.1	3.8e-109	92.82	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc10g0281921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.8e-45	41.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.6e-36	36.52	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.9e-31	33.80	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.8e-28	30.99	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	4.0e-21	29.66	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc10g0281921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	6.9e-125	94.02	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	3.2e-122	92.31	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	2.3e-120	90.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VGC7	4.1e-117	89.74	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00530...	[more]
A0A5A7VJG3	1.8e-109	92.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]

BLAST of Cmc10g0281921 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	7.3e-10	40.00	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 120..140
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 19..233
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 16..63 e-value: 2.0E-12 score: 46.8
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 76..177 e-value: 7.2E-13 score: 48.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 74..234 score: 22.994869
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 71..234 e-value: 3.3E-35 score: 123.2
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 73..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0281921.1	Cmc10g0281921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding