CmaCh15G008430 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G008430
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionIleal sodium/bile acid cotransporter, putative
LocationCma_Chr15: 4271494 .. 4271913 (-)
RNA-Seq ExpressionCmaCh15G008430
SyntenyCmaCh15G008430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTCTTCTACCCAGGGAGCCTCAGATGGGTTACCCAGGGAGCCTCAGGCTCGCAATAATCTTGGGAAGATAGTTTTTGGGCTTACTTTCCAGGCAGTGCTGGCTCTGTTCATCAGCACACCCACCTCATTTCCTCCACTTTTGATAAATCTCTTTGCAGCGGCTATGTTGATTAGCTTGGCACTTTCACTTGCTGCGCTTTTTCTTCAAACTGCCTTCCCAAGAATCGCGCTTTCGTTCGGCAAGATCGGTGCTATGCTTTCTGCTGTTGGTGCGTGCATCATGGCTAGTCTTCTTCTAAAGCATCAGAATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

mRNA sequence

ATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTCTTCTACCCAGGGAGCCTCAGATGGGTTACCCAGGGAGCCTCAGGCTCGCAATAATCTTGGGAAGATAGTTTTTGGGCTTACTTTCCAGGCAGTGCTGGCTCTGTTCATCAGCACACCCACCTCATTTCCTCCACTTTTGATAAATCTCTTTGCAGCGGCTATGTTGATTAGCTTGGCACTTTCACTTGCTGCGCTTTTTCTTCAAACTGCCTTCCCAAGAATCGCGCTTTCGTTCGGCAAGATCGGTGCTATGCTTTCTGCTGTTGGTGCGTGCATCATGGCTAGTCTTCTTCTAAAGCATCAGAATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

Coding sequence (CDS)

ATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTCTTCTACCCAGGGAGCCTCAGATGGGTTACCCAGGGAGCCTCAGGCTCGCAATAATCTTGGGAAGATAGTTTTTGGGCTTACTTTCCAGGCAGTGCTGGCTCTGTTCATCAGCACACCCACCTCATTTCCTCCACTTTTGATAAATCTCTTTGCAGCGGCTATGTTGATTAGCTTGGCACTTTCACTTGCTGCGCTTTTTCTTCAAACTGCCTTCCCAAGAATCGCGCTTTCGTTCGGCAAGATCGGTGCTATGCTTTCTGCTGTTGGTGCGTGCATCATGGCTAGTCTTCTTCTAAAGCATCAGAATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

Protein sequence

MGSTPQHVSIDMNQFSSTQGASDGLPREPQARNNLGKIVFGLTFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLSAVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK
Homology
BLAST of CmaCh15G008430 vs. ExPASy TrEMBL
Match: A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.8e-30
Identity = 83/157 (52.87%), Postives = 105/157 (66.88%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFSS-------TQGASDGLP-----------REPQARNNLGKIVFGL 60
           M S+ Q +SIDMN   S            +GLP              +  NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 61  TFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLS 120
           TFQAVLALFI++ TS PPLL +LF AA+LIS A+S   +FLQ  FPRIAL F KIGA+++
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 121 AVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 140
           A+G CI+ASLL+ HQNF+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

BLAST of CmaCh15G008430 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.5e-30
Identity = 73/110 (66.36%), Postives = 92/110 (83.64%), Query Frame = 0

Query: 30  QARNNLGKIVFGLTFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPR 89
           +  NN+GK + GLTFQAVLALFI++P S PPLL +LFAAA+LIS A+S A +FLQ  FPR
Sbjct: 37  KTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPR 96

Query: 90  IALSFGKIGAMLSAVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 140
           IAL F KIGA+++A+G CI+ASLL+ HQNF+WI WLA GF+LMAF+LSF+
Sbjct: 97  IALLFEKIGALIAAIGVCIVASLLI-HQNFAWISWLASGFSLMAFVLSFR 145

BLAST of CmaCh15G008430 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 82/164 (50.00%), Postives = 101/164 (61.59%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFSS--------------TQGASDGLP------REPQA----RNNLG 60
           M ST    S+DM+ FSS                  S+ LP      + PQA       LG
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60

Query: 61  KIVFGLTFQAVLALFIST-PTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFG 120
           KI+  L+FQAVLALFIS+ PTS PPLLI+ FAAA+ IS A+S AALFL  +FPR A  F 
Sbjct: 61  KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120

Query: 121 KIGAMLSAVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 140
           K+GA+ SA G C +AS LL HQNF+WI W+AC F+++ F LSFK
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of CmaCh15G008430 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-14
Identity = 69/165 (41.82%), Postives = 88/165 (53.33%), Query Frame = 0

Query: 1   MGSTPQH-VSIDMNQFSS---------------TQG--ASDGLP-----REPQARNN--L 60
           M  TP H +S+DMN+ +S               T G  ASD LP     + P   N+   
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60

Query: 61  GKIVFGLTFQAVLALFIS-TPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSF 120
           G     LTFQA++ LF+S  P+S  PL   LFAA ML S   S   + LQ  FP+ A   
Sbjct: 61  GNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120

Query: 121 GKIGAMLSAVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 140
              GA+ +A+G CI+ SLLL + NF+WI WLA G  L AFI+SFK
Sbjct: 121 QTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

BLAST of CmaCh15G008430 vs. ExPASy TrEMBL
Match: A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.3e-13
Identity = 64/159 (40.25%), Postives = 79/159 (49.69%), Query Frame = 0

Query: 5   PQHVSIDMNQF---------------SSTQG--ASDGLP-----REPQARNN--LGKIVF 64
           P  +S+DMN+                S T G  ASD LP     + P   N+   G    
Sbjct: 6   PHEISLDMNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPSPVNSPQFGNTFV 65

Query: 65  GLTFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAM 124
              FQA+L LF++ P S PP L  L    ML +   S   + LQ  FP+IA      GA+
Sbjct: 66  SSNFQAILGLFLNLPPS-PPPLSELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQMFGAL 125

Query: 125 LSAVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 140
           L+A+G CIM S LL H N +WI WLACG  L AFI SFK
Sbjct: 126 LAAIGVCIMGSPLL-HPNLTWIRWLACGLILPAFITSFK 162

BLAST of CmaCh15G008430 vs. NCBI nr
Match: KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255.8 bits (652), Expect = 2.2e-64
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFSSTQGASDGLPREPQARNNLGKIVFGLTFQAVLALFISTPTSFPP 60
           MGSTPQHVSIDMNQFSS QGASDGL REPQARNNLGKIVFGLTFQAVLALFISTPTSFPP
Sbjct: 1   MGSTPQHVSIDMNQFSSIQGASDGLHREPQARNNLGKIVFGLTFQAVLALFISTPTSFPP 60

Query: 61  LLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLSAVGACIMASLLLKHQNFS 120
           LLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAML+AVGACIMASLLLKHQNFS
Sbjct: 61  LLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACIMASLLLKHQNFS 120

Query: 121 WIPWLACGFALMAFILSFK 140
           WIPWLACGFALMAFILSFK
Sbjct: 121 WIPWLACGFALMAFILSFK 139

BLAST of CmaCh15G008430 vs. NCBI nr
Match: KAG6579139.1 (hypothetical protein SDJN03_23587, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-62
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFSSTQGASDGLPREPQARNNLGKIVFGLTFQAVLALFISTPTSFPP 60
           MGSTPQHVSI+MNQFSSTQGASDGL REPQARNNLGKIVFGLTFQAVLALFIS PTSFPP
Sbjct: 1   MGSTPQHVSINMNQFSSTQGASDGLHREPQARNNLGKIVFGLTFQAVLALFISRPTSFPP 60

Query: 61  LLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLSAVGACIMASLLLKHQNFS 120
           L INLFAAA+LISLALSLAALFLQTAFPRIALSFGKIGAML+AVGACIMASLLLKHQNFS
Sbjct: 61  LFINLFAAALLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACIMASLLLKHQNFS 120

Query: 121 WIPWLACGFALMAFILSFK 140
           WIPWLACGFA MAF+LSFK
Sbjct: 121 WIPWLACGFAFMAFVLSFK 139

BLAST of CmaCh15G008430 vs. NCBI nr
Match: KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.5 bits (537), Expect = 4.8e-51
Identity = 117/151 (77.48%), Postives = 127/151 (84.11%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFSSTQGASDGL------PREP------QARNNLGKIVFGLTFQAVL 60
           MGSTPQHVSIDMNQF   QGASDGL      PR P      Q RNNLGKIVFGLTFQAVL
Sbjct: 1   MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 60

Query: 61  ALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLSAVGACI 120
           ALFIS PTS PPLL+++FAAAMLIS ALSLAALFLQ A+PRIALS GKIGA+L+A+GAC 
Sbjct: 61  ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 120

Query: 121 MASLLLKHQNFSWIPWLACGFALMAFILSFK 140
           + S+LLKHQ+FSWIPWLACGFALMAFILSFK
Sbjct: 121 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 151

BLAST of CmaCh15G008430 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 7.9e-30
Identity = 83/157 (52.87%), Postives = 105/157 (66.88%), Query Frame = 0

Query: 1   MGSTPQHVSIDMNQFSS-------TQGASDGLP-----------REPQARNNLGKIVFGL 60
           M S+ Q +SIDMN   S            +GLP              +  NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 61  TFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLS 120
           TFQAVLALFI++ TS PPLL +LF AA+LIS A+S   +FLQ  FPRIAL F KIGA+++
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 121 AVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 140
           A+G CI+ASLL+ HQNF+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

BLAST of CmaCh15G008430 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-29
Identity = 73/110 (66.36%), Postives = 92/110 (83.64%), Query Frame = 0

Query: 30  QARNNLGKIVFGLTFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPR 89
           +  NN+GK + GLTFQAVLALFI++P S PPLL +LFAAA+LIS A+S A +FLQ  FPR
Sbjct: 37  KTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPR 96

Query: 90  IALSFGKIGAMLSAVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 140
           IAL F KIGA+++A+G CI+ASLL+ HQNF+WI WLA GF+LMAF+LSF+
Sbjct: 97  IALLFEKIGALIAAIGVCIVASLLI-HQNFAWISWLASGFSLMAFVLSFR 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJN83.8e-3052.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1[more]
A0A5A7U7U16.5e-3066.36Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KJP22.2e-2550.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1[more]
A0A0A0KQ033.0e-1441.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
A0A5D3BEH84.3e-1340.25Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
KAG6579136.12.2e-6497.84hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579139.12.1e-6294.24hypothetical protein SDJN03_23587, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579137.14.8e-5177.48hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49803.17.9e-3052.87hypothetical protein Csa_004681 [Cucumis sativus][more]
KAA0050246.11.4e-2966.36putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G008430.1CmaCh15G008430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane