CmaCh12G008750 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATAAACAAAAAACGGTGAAAGATACTCGTAAAGAACGTTCGAAAATTCGGGGGTGGTTGGAAAAAGCAGAATCGAGAGACTAAGACGTGGGAAAAGTAAAAGGAGAGTTGCAATAGTGAAAGGAAAGTATAGATATAGAGAGGAAGTCCCGAAGGATGGAGACGGGGGAGAGGATCTGAATCAAGTTGAATAGGTTATTAGAACTAATTGTTGCTTCATTCAGATTTCTCTATAACAGGTTAGTGAATTTGAACTTTCTGCAGATGTATGTTCTAGTTGCAAGATTATACTGGAGAAGATTTCGTTTCAATTTAACAGTTACTTGTGTTTGATTGTTGTTTTACTGGCAGTGTAGCAAGGATAGGAGATGTGATTTGAGTCATTTGATTCGGTTTTTTTATGTTTTTTCTCATTTTTCTTCCATTTATTTGCTTCCAGATTATGGTTTTGGGTACATGGATGTAATTGTAGCCAGTAATTATGCTGCTTGTGTTTCTATTATGTGTCTCCGCTGTGAATTCTTTGTGATGTTGAATCAATTTGTTCTTGGATTTCCATAGCTGAATATTTTTTCTTGCAGTTTTGGAACTCAATTGATAAATCTTGAGTTCAGTTTGGTTCTTACGGAATTTACTAGACGTGTGCTGAATTGTATCACTGGTTGGCATGAGGCTTTTCATTCTCAATTCGATTTATAGTGCCTCCAAATCTTATTTGAATCCGTGCTCATTTCAATATTGCAAGTCTTACACAAAGATTTCTGAGTATGTTAACCGAGTTCTTAGACCGAGTGTTGTTCTAAATAAACAATACTACAAAGATGAATCTCACAGCTTGAAGAACGTCTCACGTACTGGTTTCATAAGAGCACCCTCTGTATGTCGTCTACACACACCAAGTTATGGTACACATCCCATTGCTACTTTTTCCCCGGCATCACCAGTGAAATATTGGAACACTATCCCTCCTACATCTCTTGCCTATCTGTCAAACCCTCGATTCTATTCATCGACTTCTAGCAGGAAAGCGGATATTACTGGAGATACTGGTGTTCCACTAGCTTCTTCTGGTGTTGAAGCAGATATCAGTAACCCCCCCGATGTTGGAAGAGACTGGCTTGAAAGAGTCAAGGATGGCTGGCAGAGTGCTGTCGATGCAGCATCTTTTACCGGACAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGATCTTAGATTCACATCCATATCTGAAGAATGAAATTGCTCCTGTTGGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCACAAGTATTCAATGCGAAGTCCTGTTGCCATACTTTCTGGAAGCACATCTATTGAGGAAATTCCCTATGAGAAAAGCTTTTGGGGTGCCTTAGAGGATCCTTTGAGATATCTTGTTACCTTCTATGCATTTTCTCAAATGTTAGTGACTCAAACTTCAACATATTTCTCTTTAATTACACAATGGTTTGTTGACTGTGTGCTTGATCTTTGCTTGAAACATATGTCTAAACTTTGATTTGCAGTGGCAAGATGGTTGCACCAACTGCCATAGCATCAGAGTTTGTATCACAGGCGTGCAGGGGGGCTGTCATCCTTTCTCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGGCCTCCCAAAATTTTTCAGGGCTTGATCGGGAAAAGTTACTTACCCTCGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGTGAGAGCTTGCTGCCAAATGGTTTTGCAGTTTTACTTTCGTTTGACTGATTCCTAGTTTGCTGTCATGTGTCCTCCACTTGATTTGTTTATTCGTAGGGCCGAAGGTTTAACATTGTTCATCATTCTTTTTTCAAATAAAAATAAAAAAGAGAGAAAACTCTTCTCTTGATTATTAAACCTTACCGATGTAGCTCTTTTTGTATTGTTGTGGAGTGGAGTTATGCTCAAGATAACAATCATGTTCTTCGTAATGGTATGCTTAGATTTTTAGAGCGGTAATCAGGCTTGCATACTTTTAATAACTCGAAATATGTATAGCATGATTTAAATCTCTGACTTCTTTGCAGGAGTGGCCACTGCTTTTGCTTCGAGGGATATACTTGGGAATGTTTTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGTGTGTAAATCATACTTTTTCTCTTTTAGCTTTGGGCAAGGAACCAAGTTGTATCTAGCATTGTTGGGGCACATACAATCCACAAAAGTTGGAATATTTGAAGTGGGACTTCATTTTTTTTCCCCTTCTTTTACTACTATCATTCTTATTCTCCTAATAAAAACGTCACTGAAGTTGATACGTCAATGATGCTTGGTCTTTTAGATGACATTCATCTTTGTATACTATCAAATCCATGTGTACTTTTCAGTCATTGATCTCTCTTTGCATTTACTGGGAGATGATGGCATTGAACAAATTGCTGGAAACTTATAGATTGTTTCTGCAAGTTTGTTCTATTTGTTCTTTCTCATCAACTTCAAAAGCGAACGATTTGCAATTTTCCATTTGCAGGCTGGTGCTATTGAAGGCCAAGTGATTGAAATGGGCCTCATGACGACATCATTATTAAGTGCTGAAAAATTCCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGCCAGGTGAATCTTCTTTTTTTCGTTTTTGCTTTTTTGTGCTTGGATTTTATAATTATTTTATCTTCATGGTCGTTTTATTTTTGTTCGTGAACTCAATGCTTCCCTTATTTAAATTGTTTACTAAAAGTCGAGGCATATTTGACCATTAGTTTCCATAGCCGAACGATGCATATGTGGCAAATAACTTGATTAAGTACATTTGTTGTCATGAAGATGTGTTGCCAATAATATGATTAAATACATTTGTTATCATGGAGATTTAAGTGATATTGGCTTTCTATTTGAAATTAGCGTAGAAGATAGAGTAAATTTGTTGTCCTCTCGATGCCTTTCCTCATGAAGAGCATGTGAATACGTCCAACTTCATTTTTCTGGTAGTCTCGCCAGTAGATTTCTAAATTAAGTTAATTATCCATTTTGATATCTTTATAAATTTTATTAAAAATATACCATTTTTAGCTCCCGTACAGAGAAAAATCGACCAATATTCAACTTTTCGGACTTGGAGATGGTCAATAGTCACGACACGTATGGCAATTGTTCTTATCTTTCACTCGGCAAACTTTCCTGTAATGCTAGATCATTTAATCTATGTTTGATTCTTTAATTCATGCAGGGATTTCTTTGGCATATGATTTGTTGTGTTTTAATGATTTCGCATGAATCTCTTAGCTGATTATGTAATGAAGGTATTTGTTCATTTGGTCCCACATTTTTCAACCCGTTTCTTGAATTTATGCTGAGGACTGCGATGGATTTCTTGGATTAAAGATGGTGATTTTGATCAATTTTACTGTGTGGTTAAATGGGATTATAATATTTACAGGTAATTATAAATAAGTCGCGGGCGCAATGGCGTGCAATCACAAAGAAAATTCCTTTCCAAGTTGCTGATTTTAGTACGGTTTCTAAGATATCAGATGATATTAAGAGTATGCTTAGGTCTCACCCTAAGGTATTCTTGGGCAAGGAGGCTCCTTATTGCTTCCTCTCTCAAATTGAAAGTTCGTATGCAGAGCTGACAATTGGTTGCAACCTTAAAAGGATGGTGAGTCAGTCTAATATTTTGAGTGTCATATGCTAGGAATCACAACTCTCTACGATGGTATGATATGCTCCATTTTGAGCAAGCTCTCGTGGCTTTGCTTTGGGCTTCCCTAAAATCCCTCGTACCAATGGAGATGTATTCCTTACTTATAAATCCATGATCATTCCCTTAATTAACTAACATGGGACTCCCTCCCAGCAATCCTCAACAATCCTCTCTTCGAACAAATTACACCATAGAGCCTCCCTTAAGGCTTATGGAGCCCTTGCACAGCCTCCCCTTAATTGAGGCTCAACTCCTTTCTCGAGAGTTCTCGAACAAAGTACACCTTTTGTTCGACACTTGAGTCACTTTGACTACACTCTCGAGGGTCCCAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATGACTAAGTTAAGAGCATGACTTTGATACCATGTTAGGAATCGCGGATCTCCACAATGATATGATAATGTCCACTTTGAGCATAAGCTCTCATGACTTTGCATACCAATGGTGATGTATTCCTTACTTATAAACCCATGATCTTTCCCTTAATTAGCTAATGTGGGACTCCCTCCATGCAATCATCAACATCATATCCTCCTCGAACTCCTCGACTTGTTGTCCCTTCAAACGTTAGAGTTTCATACTTCAAAATTGTGTTTATGTAGGGTAAAGAAGAACTTTTCTCTACAGAGCAAGATATTCTCCTCCAGTCAGTACAGATCATCAAAGAAAATGGTGCAACCTTGGGTAACTGA ATGATAAACAAAAAACGTGCCTCCAAATCTTATTTGAATCCGTGCTCATTTCAATATTGCAAGTCTTACACAAAGATTTCTGAGTATGTTAACCGAGTTCTTAGACCGAGTGTTGTTCTAAATAAACAATACTACAAAGATGAATCTCACAGCTTGAAGAACGTCTCACGTACTGGTTTCATAAGAGCACCCTCTGTATGTCGTCTACACACACCAAGTTATGGTACACATCCCATTGCTACTTTTTCCCCGGCATCACCAGTGAAATATTGGAACACTATCCCTCCTACATCTCTTGCCTATCTGTCAAACCCTCGATTCTATTCATCGACTTCTAGCAGGAAAGCGGATATTACTGGAGATACTGGTGTTCCACTAGCTTCTTCTGGTGTTGAAGCAGATATCAGTAACCCCCCCGATGTTGGAAGAGACTGGCTTGAAAGAGTCAAGGATGGCTGGCAGAGTGCTGTCGATGCAGCATCTTTTACCGGACAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGATCTTAGATTCACATCCATATCTGAAGAATGAAATTGCTCCTGTTGGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCACAAGTATTCAATGCGAAGTCCTGTTGCCATACTTTCTGGAAGCACATCTATTGAGGAAATTCCCTATGAGAAAAGCTTTTGGGGTGCCTTAGAGGATCCTTTGAGATATCTTGTTACCTTCTATGCATTTTCTCAAATTGGCAAGATGGTTGCACCAACTGCCATAGCATCAGAGTTTGTATCACAGGCGTGCAGGGGGGCTGTCATCCTTTCTCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGGCCTCCCAAAATTTTTCAGGGCTTGATCGGGAAAAGTTACTTACCCTCGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTTCGAGGGATATACTTGGGAATGTTTTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGCCAAGTGATTGAAATGGGCCTCATGACGACATCATTATTAAGTGCTGAAAAATTCCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGCCAGGTAATTATAAATAAGTCGCGGGCGCAATGGCGTGCAATCACAAAGAAAATTCCTTTCCAAGTTGCTGATTTTAGTACGGTTTCTAAGATATCAGATGATATTAAGAGTATGCTTAGGTCTCACCCTAAGGTATTCTTGGGCAAGGAGGCTCCTTATTGCTTCCTCTCTCAAATTGAAAAGCAAGATATTCTCCTCCAGTCAGTACAGATCATCAAAGAAAATGGTGCAACCTTGGGTAACTGA ATGATAAACAAAAAACGTGCCTCCAAATCTTATTTGAATCCGTGCTCATTTCAATATTGCAAGTCTTACACAAAGATTTCTGAGTATGTTAACCGAGTTCTTAGACCGAGTGTTGTTCTAAATAAACAATACTACAAAGATGAATCTCACAGCTTGAAGAACGTCTCACGTACTGGTTTCATAAGAGCACCCTCTGTATGTCGTCTACACACACCAAGTTATGGTACACATCCCATTGCTACTTTTTCCCCGGCATCACCAGTGAAATATTGGAACACTATCCCTCCTACATCTCTTGCCTATCTGTCAAACCCTCGATTCTATTCATCGACTTCTAGCAGGAAAGCGGATATTACTGGAGATACTGGTGTTCCACTAGCTTCTTCTGGTGTTGAAGCAGATATCAGTAACCCCCCCGATGTTGGAAGAGACTGGCTTGAAAGAGTCAAGGATGGCTGGCAGAGTGCTGTCGATGCAGCATCTTTTACCGGACAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGATCTTAGATTCACATCCATATCTGAAGAATGAAATTGCTCCTGTTGGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCACAAGTATTCAATGCGAAGTCCTGTTGCCATACTTTCTGGAAGCACATCTATTGAGGAAATTCCCTATGAGAAAAGCTTTTGGGGTGCCTTAGAGGATCCTTTGAGATATCTTGTTACCTTCTATGCATTTTCTCAAATTGGCAAGATGGTTGCACCAACTGCCATAGCATCAGAGTTTGTATCACAGGCGTGCAGGGGGGCTGTCATCCTTTCTCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGGCCTCCCAAAATTTTTCAGGGCTTGATCGGGAAAAGTTACTTACCCTCGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTTCGAGGGATATACTTGGGAATGTTTTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGCCAAGTGATTGAAATGGGCCTCATGACGACATCATTATTAAGTGCTGAAAAATTCCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGCCAGGTAATTATAAATAAGTCGCGGGCGCAATGGCGTGCAATCACAAAGAAAATTCCTTTCCAAGTTGCTGATTTTAGTACGGTTTCTAAGATATCAGATGATATTAAGAGTATGCTTAGGTCTCACCCTAAGGTATTCTTGGGCAAGGAGGCTCCTTATTGCTTCCTCTCTCAAATTGAAAAGCAAGATATTCTCCTCCAGTCAGTACAGATCATCAAAGAAAATGGTGCAACCTTGGGTAACTGA MINKKRASKSYLNPCSFQYCKSYTKISEYVNRVLRPSVVLNKQYYKDESHSLKNVSRTGFIRAPSVCRLHTPSYGTHPIATFSPASPVKYWNTIPPTSLAYLSNPRFYSSTSSRKADITGDTGVPLASSGVEADISNPPDVGRDWLERVKDGWQSAVDAASFTGQKAREVSDEFSPHVDKILDSHPYLKNEIAPVGMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSTSIEEIPYEKSFWGALEDPLRYLVTFYAFSQIGKMVAPTAIASEFVSQACRGAVILSLVWFIYRWKTNVFSRALASQNFSGLDREKLLTLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVATAFASRDILGNVLSGLTMQFSQPFSLGDTIKAGAIEGQVIEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPFQVADFSTVSKISDDIKSMLRSHPKVFLGKEAPYCFLSQIEKQDILLQSVQIIKENGATLGN Homology
BLAST of CmaCh12G008750 vs. ExPASy Swiss-Prot
Match: Q8VZL4 (Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MSL1 PE=1 SV=1) HSP 1 Score: 498.0 bits (1281), Expect = 1.2e-139 Identity = 260/442 (58.82%), Postives = 332/442 (75.11%), Query Frame = 0
BLAST of CmaCh12G008750 vs. ExPASy Swiss-Prot
Match: P0AEB6 (Low conductance mechanosensitive channel YnaI OS=Escherichia coli O157:H7 OX=83334 GN=ynaI PE=3 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 2.5e-20 Identity = 74/242 (30.58%), Postives = 120/242 (49.59%), Query Frame = 0
BLAST of CmaCh12G008750 vs. ExPASy Swiss-Prot
Match: P0AEB5 (Low conductance mechanosensitive channel YnaI OS=Escherichia coli (strain K12) OX=83333 GN=ynaI PE=1 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 2.5e-20 Identity = 74/242 (30.58%), Postives = 120/242 (49.59%), Query Frame = 0
BLAST of CmaCh12G008750 vs. ExPASy Swiss-Prot
Match: O25170 (Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 GN=HP_0415 PE=3 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 6.1e-14 Identity = 58/202 (28.71%), Postives = 103/202 (50.99%), Query Frame = 0
BLAST of CmaCh12G008750 vs. ExPASy Swiss-Prot
Match: Q9ZKG7 (Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori (strain J99 / ATCC 700824) OX=85963 GN=jhp_0969 PE=3 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 7.9e-14 Identity = 58/202 (28.71%), Postives = 103/202 (50.99%), Query Frame = 0
BLAST of CmaCh12G008750 vs. TAIR 10
Match: AT4G00290.1 (Mechanosensitive ion channel protein ) HSP 1 Score: 498.0 bits (1281), Expect = 8.6e-141 Identity = 260/442 (58.82%), Postives = 332/442 (75.11%), Query Frame = 0
BLAST of CmaCh12G008750 vs. TAIR 10
Match: AT4G00234.1 (BEST Arabidopsis thaliana protein match is: Mechanosensitive ion channel protein (TAIR:AT4G00290.1); Has 57 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). ) HSP 1 Score: 280.0 bits (715), Expect = 3.7e-75 Identity = 145/252 (57.54%), Postives = 187/252 (74.21%), Query Frame = 0
BLAST of CmaCh12G008750 vs. TAIR 10
Match: AT1G58200.1 (MSCS-like 3 ) HSP 1 Score: 58.9 bits (141), Expect = 1.3e-08 Identity = 45/159 (28.30%), Postives = 79/159 (49.69%), Query Frame = 0
BLAST of CmaCh12G008750 vs. TAIR 10
Match: AT1G58200.2 (MSCS-like 3 ) HSP 1 Score: 58.9 bits (141), Expect = 1.3e-08 Identity = 45/159 (28.30%), Postives = 79/159 (49.69%), Query Frame = 0
BLAST of CmaCh12G008750 vs. TAIR 10
Match: AT5G10490.1 (MSCS-like 2 ) HSP 1 Score: 52.8 bits (125), Expect = 9.6e-07 Identity = 43/151 (28.48%), Postives = 74/151 (49.01%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|