CmaCh06G012930 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G012930
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	S-adenosyl-L-methionine-dependent methyltransferase
Location	Cma_Chr06: 8589954 .. 8592264 (+)
RNA-Seq Expression	CmaCh06G012930
Synteny	CmaCh06G012930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTAATTCACACAATTTGCAGAGACCGATGAAGCTTGCGAGGTTTATAACTCCAAGCTTCGGCTATGGATTCTTCGATCATTCCTCATTCTGGGCCCCTGGATTTGCCTGAGTGATGTGGCGTAGAGCCGGAATTTTGCGAGGGCTGGGCGTTCGGCGGTTTTCAGCGGAAACTCGCCGTCGTATCGAGGACGAGGGAGACTGGTTTTACGCCTCAGAATGGTGGGGGAACGATTACGACGGCGACGGCGACGGCCGCACTGTTTTCAGTTCAACATCTGAGAAAGGAAATGGCGTCGTCTCTGTTCTTTCATACCCTTCCTCCAGGCCTGTTAGTCTCTCTCTCTATCTAAGGACGGCTTGATTTGTAGTAATCTTGTTCGAATGTGATTGTTCTTCCATTTTTTTTTCTAGTTTTTGCGGCGTTTTCTTTCAAAATCTTTGAATAGCTTAAGTTTCAGCTTGATCGTTACTCGTAAGGACTTCTTTATTTCTGGTTTCCTGAGGAAGATATTGGTTTTCAAAATAATGCAGAATGGGCTTCATTGGCCAGGGACTGGTAGGTGGCTTCAGCAAAGATATGCCGAGCTATGCCCTGGTTGCAAGAACGGGGAGAGGTTCGGGATTCTTGGATATCAATGGCGAGTGCTTCGTTTCAATGACAATACTCGCCAAAGCACTGCTAAAGTAATGGCTGCTTACCGGGAATCAAAACCCGAGTCAATTTTCCTCATGCAGCAGGCGCATTGTTTGGCTGTTCCTTGTAATTTCGTCATTTTTTCCCCCCATTTTCTAAACTTGATCCAATAATGCTAACCATTGCTTCCACCAATCAAATTAAGCTTCTCTTACGAGGAATTTGAACAATAACATGACTAATGTATTCATCTGTTCAAAATTTCAGATCTAAAGAGTATGATATCAGTTGGGTTGACCACTATGGCATCTTGTGGGTATGATCTTTTGAATGCAATCCAAGGAAAACAAAATCTACGTATTTTATGTATTGGTCATGGTGGTGGGAGCTTGCCTCTATTTTTAGCAAGTAAAATTCAAGGTGAGAGTTCTCTTTCTTCCTCATCTATGAACTTGATGCATTACTGGTCAATGACCTTCACCACAATGAATTAGCTGAATAAAATTTAGAAATGTTACAATTTATAGTGTCACACTGTCATTTACGAGTAGCAAGATTATAGAGGATGGCGAAGAATGATGGCAAGGACTGATTATCAGTAACATCTGTTCTAAAATCAAGCATATATTTGTTCTGTTCATAGAACTGGGATCTTTAAAGTTAAAGGGTTAATCACGAAGCTAGTTCCAAATACTTGTGTTATTTTCAGGTGCCAATGTTGACATAGTTGAAATCGACCCTCTTGTTATCTCGGCCTCAATCCAAGCCATGGGCTTCCCAGCGTTCTCAGTTATGACTGCATCAGGAGAGCGTGCATTTGCCCGACCCGAATCCATTGACGATGTCATGTGGAAAGGCATCCATGAAAGACTTTTCCTCTACGAATTAGATGCAGAGGATTTCGTCTGCAACACGACCAATCTATACGACATGATCTTCATTGATGCTTACGACGGAGATGACATATTCCCGAACAAACTCTGGGATCCAAATTCCACATTTCTTGAAGCTCTCAGCAAGCGACTTCATCCTAAACATGGAACTGTGGTGGTGAATCTTCACTCAGATTCCGATCTCTTGACTTCTGATGGCTCTGTCCCATCTGTTCTTGAACATATATTGCCAATGGGAAAGTATGTATCCCAAATCGGTCGAGCGTACAAGGATGTTCTGACAGGAGATGGAAGTTCTTCTGATGAAAGTTCTGGTTTAGGATTCACAGTGGCGGTTCCCTGGGTTTGCAATACATCTCTGGTTGTGTGCAAAGGTTTCGAAATGAACTGTGAGTATCTTGACCGGGATCTATTAATGAACACATTGATATCTAAATCCCTTGAAGTAGAACGTCTTCTGAAGCTGCCATTTTCTTGTTTGGAGTATATAAAGAGAGGTTTTGTACTTATTGATTAATAGTTCAAACACTTCATCGCTTTTGCTCACCACTCTAGTTTTGGATGTTTGAACTTTTACACTTGATGAGGAACTGGATGATATAAATTCAATCATTGAGATAGGCTCGCTCGATGGAGCTTGATCATATGTAACTAGGAAATGAAAATTCTATTATGAAGTCACATGAGGTTTTCAAGTTACAAACGTGCTGTCAAATGTTTGAAATTGTATGAAAGTTGTAGTTGTATGAAATGGGATTGAACTCTTGAATACTTGATGCCC

mRNA sequence

CCTTAATTCACACAATTTGCAGAGACCGATGAAGCTTGCGAGGTTTATAACTCCAAGCTTCGGCTATGGATTCTTCGATCATTCCTCATTCTGGGCCCCTGGATTTGCCTGAGTGATGTGGCGTAGAGCCGGAATTTTGCGAGGGCTGGGCGTTCGGCGGTTTTCAGCGGAAACTCGCCGTCGTATCGAGGACGAGGGAGACTGGTTTTACGCCTCAGAATGGTGGGGGAACGATTACGACGGCGACGGCGACGGCCGCACTGTTTTCAGTTCAACATCTGAGAAAGGAAATGGCGTCGTCTCTGTTCTTTCATACCCTTCCTCCAGGCCTAATGGGCTTCATTGGCCAGGGACTGGTAGGTGGCTTCAGCAAAGATATGCCGAGCTATGCCCTGGTTGCAAGAACGGGGAGAGGTTCGGGATTCTTGGATATCAATGGCGAGTGCTTCGTTTCAATGACAATACTCGCCAAAGCACTGCTAAAGTAATGGCTGCTTACCGGGAATCAAAACCCGAGTCAATTTTCCTCATGCAGCAGGCGCATTGTTTGGCTGTTCCTTATCTAAAGAGTATGATATCAGTTGGGTTGACCACTATGGCATCTTGTGGGTATGATCTTTTGAATGCAATCCAAGGAAAACAAAATCTACGTATTTTATGTATTGGTCATGGTGGTGGGAGCTTGCCTCTATTTTTAGCAAGTAAAATTCAAGGTGCCAATGTTGACATAGTTGAAATCGACCCTCTTGTTATCTCGGCCTCAATCCAAGCCATGGGCTTCCCAGCGTTCTCAGTTATGACTGCATCAGGAGAGCGTGCATTTGCCCGACCCGAATCCATTGACGATGTCATGTGGAAAGGCATCCATGAAAGACTTTTCCTCTACGAATTAGATGCAGAGGATTTCGTCTGCAACACGACCAATCTATACGACATGATCTTCATTGATGCTTACGACGGAGATGACATATTCCCGAACAAACTCTGGGATCCAAATTCCACATTTCTTGAAGCTCTCAGCAAGCGACTTCATCCTAAACATGGAACTGTGGTGGTGAATCTTCACTCAGATTCCGATCTCTTGACTTCTGATGGCTCTGTCCCATCTGTTCTTGAACATATATTGCCAATGGGAAAGTATGTATCCCAAATCGGTCGAGCGTACAAGGATGTTCTGACAGGAGATGGAAGTTCTTCTGATGAAAGTTCTGGTTTAGGATTCACAGTGGCGGTTCCCTGGGTTTGCAATACATCTCTGGTTGTGTGCAAAGGTTTCGAAATGAACTGTGAGTATCTTGACCGGGATCTATTAATGAACACATTGATATCTAAATCCCTTGAAGTAGAACGTCTTCTGAAGCTGCCATTTTCTTGTTTGGAGTATATAAAGAGAGGTTTTGTACTTATTGATTAATAGTTCAAACACTTCATCGCTTTTGCTCACCACTCTAGTTTTGGATGTTTGAACTTTTACACTTGATGAGGAACTGGATGATATAAATTCAATCATTGAGATAGGCTCGCTCGATGGAGCTTGATCATATGTAACTAGGAAATGAAAATTCTATTATGAAGTCACATGAGGTTTTCAAGTTACAAACGTGCTGTCAAATGTTTGAAATTGTATGAAAGTTGTAGTTGTATGAAATGGGATTGAACTCTTGAATACTTGATGCCC

Coding sequence (CDS)

ATGTGGCGTAGAGCCGGAATTTTGCGAGGGCTGGGCGTTCGGCGGTTTTCAGCGGAAACTCGCCGTCGTATCGAGGACGAGGGAGACTGGTTTTACGCCTCAGAATGGTGGGGGAACGATTACGACGGCGACGGCGACGGCCGCACTGTTTTCAGTTCAACATCTGAGAAAGGAAATGGCGTCGTCTCTGTTCTTTCATACCCTTCCTCCAGGCCTAATGGGCTTCATTGGCCAGGGACTGGTAGGTGGCTTCAGCAAAGATATGCCGAGCTATGCCCTGGTTGCAAGAACGGGGAGAGGTTCGGGATTCTTGGATATCAATGGCGAGTGCTTCGTTTCAATGACAATACTCGCCAAAGCACTGCTAAAGTAATGGCTGCTTACCGGGAATCAAAACCCGAGTCAATTTTCCTCATGCAGCAGGCGCATTGTTTGGCTGTTCCTTATCTAAAGAGTATGATATCAGTTGGGTTGACCACTATGGCATCTTGTGGGTATGATCTTTTGAATGCAATCCAAGGAAAACAAAATCTACGTATTTTATGTATTGGTCATGGTGGTGGGAGCTTGCCTCTATTTTTAGCAAGTAAAATTCAAGGTGCCAATGTTGACATAGTTGAAATCGACCCTCTTGTTATCTCGGCCTCAATCCAAGCCATGGGCTTCCCAGCGTTCTCAGTTATGACTGCATCAGGAGAGCGTGCATTTGCCCGACCCGAATCCATTGACGATGTCATGTGGAAAGGCATCCATGAAAGACTTTTCCTCTACGAATTAGATGCAGAGGATTTCGTCTGCAACACGACCAATCTATACGACATGATCTTCATTGATGCTTACGACGGAGATGACATATTCCCGAACAAACTCTGGGATCCAAATTCCACATTTCTTGAAGCTCTCAGCAAGCGACTTCATCCTAAACATGGAACTGTGGTGGTGAATCTTCACTCAGATTCCGATCTCTTGACTTCTGATGGCTCTGTCCCATCTGTTCTTGAACATATATTGCCAATGGGAAAGTATGTATCCCAAATCGGTCGAGCGTACAAGGATGTTCTGACAGGAGATGGAAGTTCTTCTGATGAAAGTTCTGGTTTAGGATTCACAGTGGCGGTTCCCTGGGTTTGCAATACATCTCTGGTTGTGTGCAAAGGTTTCGAAATGAACTGTGAGTATCTTGACCGGGATCTATTAATGAACACATTGATATCTAAATCCCTTGAAGTAGAACGTCTTCTGAAGCTGCCATTTTCTTGTTTGGAGTATATAAAGAGAGGTTTTGTACTTATTGATTAA

Protein sequence

MWRRAGILRGLGVRRFSAETRRRIEDEGDWFYASEWWGNDYDGDGDGRTVFSSTSEKGNGVVSVLSYPSSRPNGLHWPGTGRWLQQRYAELCPGCKNGERFGILGYQWRVLRFNDNTRQSTAKVMAAYRESKPESIFLMQQAHCLAVPYLKSMISVGLTTMASCGYDLLNAIQGKQNLRILCIGHGGGSLPLFLASKIQGANVDIVEIDPLVISASIQAMGFPAFSVMTASGERAFARPESIDDVMWKGIHERLFLYELDAEDFVCNTTNLYDMIFIDAYDGDDIFPNKLWDPNSTFLEALSKRLHPKHGTVVVNLHSDSDLLTSDGSVPSVLEHILPMGKYVSQIGRAYKDVLTGDGSSSDESSGLGFTVAVPWVCNTSLVVCKGFEMNCEYLDRDLLMNTLISKSLEVERLLKLPFSCLEYIKRGFVLID

Homology

[Close]

BLAST of CmaCh06G012930 vs. TAIR 10
Match: AT4G13330.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 454.9 bits (1169), Expect = 7.2e-128
Identity = 236/412 (57.28%), Postives = 295/412 (71.60%), Query Frame = 0


Query: 24  IEDEGDWFYASEWWGNDYDGDGDGRTVFSSTSEKGNGVVSVLSYPSSRPNGLHWPGTGRW 83
           I+DEGDWFY+ EWW    D    G TV  + S KGNGVVSV+++PSS P+   W  T +W
Sbjct: 34  IKDEGDWFYSPEWW----DPQDGGYTVSRAVSNKGNGVVSVVAHPSSLPSRDSWGETEKW 93

Query: 84  LQQRYAELCPGC---KNGERFGILGYQWRVLRFNDNTRQSTAKVMAAYRESKPESIFLMQ 143
           L++RY E+ P     KNG RF +LGYQWR LRFND+TRQST KVMAA R  +P S+F MQ
Sbjct: 94  LEKRYMEIIPRDTEEKNG-RFNVLGYQWRSLRFNDDTRQSTVKVMAACRTLQPSSVFYMQ 153

Query: 144 QAHCLAVPYLKSMISVGLTTMASCGYDLLNAIQGKQNLRILCIGHGGGSLPLFLASKIQG 203
           Q HCLAVPYLKSM+SVGLT++A+  +D+ +   G + +R+LCIGHGGGSLPLF+A  I G
Sbjct: 154 QPHCLAVPYLKSMVSVGLTSLAASKFDMRSVAIGDKQMRVLCIGHGGGSLPLFIAKHILG 213

Query: 204 ANVDIVEIDPLVISASIQAMGFPAFSVMTASGERAFARPESIDDVMWKGIHERLFLYELD 263
           A VDIVE+DPLVIS S++AMGFPAFSVMTA+G+R    PE ID VMW GIHERL LYE  
Sbjct: 214 AVVDIVELDPLVISESVRAMGFPAFSVMTATGKRVLPTPEIIDQVMWGGIHERLSLYESK 273

Query: 264 AEDFVC-NTTNLYDMIFIDAYDGDDIFPNKLWDPNSTFLEALSKRLHPKHGTVVVNLHSD 323
           AEDF+  N +N YD+IF+DAYDG DIFP+ LWD +S F++ALSK LH +HGT+VVNLHSD
Sbjct: 274 AEDFILRNQSNTYDLIFMDAYDGADIFPHSLWDSSSVFMKALSKTLHHEHGTLVVNLHSD 333

Query: 324 SDLLTSDGSVPSVLEHILPMGKYVSQIGRAYKDVLTGDGSSSDESSGLGFTVAVPWVCNT 383
           +D+   D S   V       GKYV ++G+AYK      G   +E +GL F   VPW+CN 
Sbjct: 334 ADISDIDRSNEGV-----TTGKYVRKVGKAYK-----KGLLENERNGLVFACEVPWLCNV 393

Query: 384 SLVVCKGFEMNCEYLDRDLLMNTLISKSLEVERLLKLPFSCLEYIKRGFVLI 432
           SLVV +G  M  E  DR+   + L+  SLEV+R+L+LPFSCL+Y+K G  +I
Sbjct: 394 SLVVSRG--MGSEGRDREKTKSNLMKTSLEVDRVLRLPFSCLDYLKTGLAII 428

The following BLAST results are available for this feature:

BLAST of CmaCh06G012930 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G012930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13330.1	7.2e-128	57.28	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 110..353 e-value: 3.3E-37 score: 130.2
None	No IPR available	PANTHER	PTHR12176:SF56	OSJNBA0004N05.3 PROTEIN	coord: 18..425
None	No IPR available	PANTHER	PTHR12176	SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN	coord: 18..425
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 172..321

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G012930.1	CmaCh06G012930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006747	FAD biosynthetic process
biological_process	GO:0032259	methylation
biological_process	GO:0009231	riboflavin biosynthetic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003919	FMN adenylyltransferase activity
molecular_function	GO:0008168	methyltransferase activity