CmaCh06G012930.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G012930.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionS-adenosyl-L-methionine-dependent methyltransferase
LocationCma_Chr06: 8589954 .. 8592264 (+)
Sequence length1678
RNA-Seq ExpressionCmaCh06G012930.1
SyntenyCmaCh06G012930.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTAATTCACACAATTTGCAGAGACCGATGAAGCTTGCGAGGTTTATAACTCCAAGCTTCGGCTATGGATTCTTCGATCATTCCTCATTCTGGGCCCCTGGATTTGCCTGAGTGATGTGGCGTAGAGCCGGAATTTTGCGAGGGCTGGGCGTTCGGCGGTTTTCAGCGGAAACTCGCCGTCGTATCGAGGACGAGGGAGACTGGTTTTACGCCTCAGAATGGTGGGGGAACGATTACGACGGCGACGGCGACGGCCGCACTGTTTTCAGTTCAACATCTGAGAAAGGAAATGGCGTCGTCTCTGTTCTTTCATACCCTTCCTCCAGGCCTGTTAGTCTCTCTCTCTATCTAAGGACGGCTTGATTTGTAGTAATCTTGTTCGAATGTGATTGTTCTTCCATTTTTTTTTCTAGTTTTTGCGGCGTTTTCTTTCAAAATCTTTGAATAGCTTAAGTTTCAGCTTGATCGTTACTCGTAAGGACTTCTTTATTTCTGGTTTCCTGAGGAAGATATTGGTTTTCAAAATAATGCAGAATGGGCTTCATTGGCCAGGGACTGGTAGGTGGCTTCAGCAAAGATATGCCGAGCTATGCCCTGGTTGCAAGAACGGGGAGAGGTTCGGGATTCTTGGATATCAATGGCGAGTGCTTCGTTTCAATGACAATACTCGCCAAAGCACTGCTAAAGTAATGGCTGCTTACCGGGAATCAAAACCCGAGTCAATTTTCCTCATGCAGCAGGCGCATTGTTTGGCTGTTCCTTGTAATTTCGTCATTTTTTCCCCCCATTTTCTAAACTTGATCCAATAATGCTAACCATTGCTTCCACCAATCAAATTAAGCTTCTCTTACGAGGAATTTGAACAATAACATGACTAATGTATTCATCTGTTCAAAATTTCAGATCTAAAGAGTATGATATCAGTTGGGTTGACCACTATGGCATCTTGTGGGTATGATCTTTTGAATGCAATCCAAGGAAAACAAAATCTACGTATTTTATGTATTGGTCATGGTGGTGGGAGCTTGCCTCTATTTTTAGCAAGTAAAATTCAAGGTGAGAGTTCTCTTTCTTCCTCATCTATGAACTTGATGCATTACTGGTCAATGACCTTCACCACAATGAATTAGCTGAATAAAATTTAGAAATGTTACAATTTATAGTGTCACACTGTCATTTACGAGTAGCAAGATTATAGAGGATGGCGAAGAATGATGGCAAGGACTGATTATCAGTAACATCTGTTCTAAAATCAAGCATATATTTGTTCTGTTCATAGAACTGGGATCTTTAAAGTTAAAGGGTTAATCACGAAGCTAGTTCCAAATACTTGTGTTATTTTCAGGTGCCAATGTTGACATAGTTGAAATCGACCCTCTTGTTATCTCGGCCTCAATCCAAGCCATGGGCTTCCCAGCGTTCTCAGTTATGACTGCATCAGGAGAGCGTGCATTTGCCCGACCCGAATCCATTGACGATGTCATGTGGAAAGGCATCCATGAAAGACTTTTCCTCTACGAATTAGATGCAGAGGATTTCGTCTGCAACACGACCAATCTATACGACATGATCTTCATTGATGCTTACGACGGAGATGACATATTCCCGAACAAACTCTGGGATCCAAATTCCACATTTCTTGAAGCTCTCAGCAAGCGACTTCATCCTAAACATGGAACTGTGGTGGTGAATCTTCACTCAGATTCCGATCTCTTGACTTCTGATGGCTCTGTCCCATCTGTTCTTGAACATATATTGCCAATGGGAAAGTATGTATCCCAAATCGGTCGAGCGTACAAGGATGTTCTGACAGGAGATGGAAGTTCTTCTGATGAAAGTTCTGGTTTAGGATTCACAGTGGCGGTTCCCTGGGTTTGCAATACATCTCTGGTTGTGTGCAAAGGTTTCGAAATGAACTGTGAGTATCTTGACCGGGATCTATTAATGAACACATTGATATCTAAATCCCTTGAAGTAGAACGTCTTCTGAAGCTGCCATTTTCTTGTTTGGAGTATATAAAGAGAGGTTTTGTACTTATTGATTAATAGTTCAAACACTTCATCGCTTTTGCTCACCACTCTAGTTTTGGATGTTTGAACTTTTACACTTGATGAGGAACTGGATGATATAAATTCAATCATTGAGATAGGCTCGCTCGATGGAGCTTGATCATATGTAACTAGGAAATGAAAATTCTATTATGAAGTCACATGAGGTTTTCAAGTTACAAACGTGCTGTCAAATGTTTGAAATTGTATGAAAGTTGTAGTTGTATGAAATGGGATTGAACTCTTGAATACTTGATGCCC

mRNA sequence

CCTTAATTCACACAATTTGCAGAGACCGATGAAGCTTGCGAGGTTTATAACTCCAAGCTTCGGCTATGGATTCTTCGATCATTCCTCATTCTGGGCCCCTGGATTTGCCTGAGTGATGTGGCGTAGAGCCGGAATTTTGCGAGGGCTGGGCGTTCGGCGGTTTTCAGCGGAAACTCGCCGTCGTATCGAGGACGAGGGAGACTGGTTTTACGCCTCAGAATGGTGGGGGAACGATTACGACGGCGACGGCGACGGCCGCACTGTTTTCAGTTCAACATCTGAGAAAGGAAATGGCGTCGTCTCTGTTCTTTCATACCCTTCCTCCAGGCCTAATGGGCTTCATTGGCCAGGGACTGGTAGGTGGCTTCAGCAAAGATATGCCGAGCTATGCCCTGGTTGCAAGAACGGGGAGAGGTTCGGGATTCTTGGATATCAATGGCGAGTGCTTCGTTTCAATGACAATACTCGCCAAAGCACTGCTAAAGTAATGGCTGCTTACCGGGAATCAAAACCCGAGTCAATTTTCCTCATGCAGCAGGCGCATTGTTTGGCTGTTCCTTATCTAAAGAGTATGATATCAGTTGGGTTGACCACTATGGCATCTTGTGGGTATGATCTTTTGAATGCAATCCAAGGAAAACAAAATCTACGTATTTTATGTATTGGTCATGGTGGTGGGAGCTTGCCTCTATTTTTAGCAAGTAAAATTCAAGGTGCCAATGTTGACATAGTTGAAATCGACCCTCTTGTTATCTCGGCCTCAATCCAAGCCATGGGCTTCCCAGCGTTCTCAGTTATGACTGCATCAGGAGAGCGTGCATTTGCCCGACCCGAATCCATTGACGATGTCATGTGGAAAGGCATCCATGAAAGACTTTTCCTCTACGAATTAGATGCAGAGGATTTCGTCTGCAACACGACCAATCTATACGACATGATCTTCATTGATGCTTACGACGGAGATGACATATTCCCGAACAAACTCTGGGATCCAAATTCCACATTTCTTGAAGCTCTCAGCAAGCGACTTCATCCTAAACATGGAACTGTGGTGGTGAATCTTCACTCAGATTCCGATCTCTTGACTTCTGATGGCTCTGTCCCATCTGTTCTTGAACATATATTGCCAATGGGAAAGTATGTATCCCAAATCGGTCGAGCGTACAAGGATGTTCTGACAGGAGATGGAAGTTCTTCTGATGAAAGTTCTGGTTTAGGATTCACAGTGGCGGTTCCCTGGGTTTGCAATACATCTCTGGTTGTGTGCAAAGGTTTCGAAATGAACTGTGAGTATCTTGACCGGGATCTATTAATGAACACATTGATATCTAAATCCCTTGAAGTAGAACGTCTTCTGAAGCTGCCATTTTCTTGTTTGGAGTATATAAAGAGAGGTTTTGTACTTATTGATTAATAGTTCAAACACTTCATCGCTTTTGCTCACCACTCTAGTTTTGGATGTTTGAACTTTTACACTTGATGAGGAACTGGATGATATAAATTCAATCATTGAGATAGGCTCGCTCGATGGAGCTTGATCATATGTAACTAGGAAATGAAAATTCTATTATGAAGTCACATGAGGTTTTCAAGTTACAAACGTGCTGTCAAATGTTTGAAATTGTATGAAAGTTGTAGTTGTATGAAATGGGATTGAACTCTTGAATACTTGATGCCC

Coding sequence (CDS)

ATGTGGCGTAGAGCCGGAATTTTGCGAGGGCTGGGCGTTCGGCGGTTTTCAGCGGAAACTCGCCGTCGTATCGAGGACGAGGGAGACTGGTTTTACGCCTCAGAATGGTGGGGGAACGATTACGACGGCGACGGCGACGGCCGCACTGTTTTCAGTTCAACATCTGAGAAAGGAAATGGCGTCGTCTCTGTTCTTTCATACCCTTCCTCCAGGCCTAATGGGCTTCATTGGCCAGGGACTGGTAGGTGGCTTCAGCAAAGATATGCCGAGCTATGCCCTGGTTGCAAGAACGGGGAGAGGTTCGGGATTCTTGGATATCAATGGCGAGTGCTTCGTTTCAATGACAATACTCGCCAAAGCACTGCTAAAGTAATGGCTGCTTACCGGGAATCAAAACCCGAGTCAATTTTCCTCATGCAGCAGGCGCATTGTTTGGCTGTTCCTTATCTAAAGAGTATGATATCAGTTGGGTTGACCACTATGGCATCTTGTGGGTATGATCTTTTGAATGCAATCCAAGGAAAACAAAATCTACGTATTTTATGTATTGGTCATGGTGGTGGGAGCTTGCCTCTATTTTTAGCAAGTAAAATTCAAGGTGCCAATGTTGACATAGTTGAAATCGACCCTCTTGTTATCTCGGCCTCAATCCAAGCCATGGGCTTCCCAGCGTTCTCAGTTATGACTGCATCAGGAGAGCGTGCATTTGCCCGACCCGAATCCATTGACGATGTCATGTGGAAAGGCATCCATGAAAGACTTTTCCTCTACGAATTAGATGCAGAGGATTTCGTCTGCAACACGACCAATCTATACGACATGATCTTCATTGATGCTTACGACGGAGATGACATATTCCCGAACAAACTCTGGGATCCAAATTCCACATTTCTTGAAGCTCTCAGCAAGCGACTTCATCCTAAACATGGAACTGTGGTGGTGAATCTTCACTCAGATTCCGATCTCTTGACTTCTGATGGCTCTGTCCCATCTGTTCTTGAACATATATTGCCAATGGGAAAGTATGTATCCCAAATCGGTCGAGCGTACAAGGATGTTCTGACAGGAGATGGAAGTTCTTCTGATGAAAGTTCTGGTTTAGGATTCACAGTGGCGGTTCCCTGGGTTTGCAATACATCTCTGGTTGTGTGCAAAGGTTTCGAAATGAACTGTGAGTATCTTGACCGGGATCTATTAATGAACACATTGATATCTAAATCCCTTGAAGTAGAACGTCTTCTGAAGCTGCCATTTTCTTGTTTGGAGTATATAAAGAGAGGTTTTGTACTTATTGATTAA

Protein sequence

MWRRAGILRGLGVRRFSAETRRRIEDEGDWFYASEWWGNDYDGDGDGRTVFSSTSEKGNGVVSVLSYPSSRPNGLHWPGTGRWLQQRYAELCPGCKNGERFGILGYQWRVLRFNDNTRQSTAKVMAAYRESKPESIFLMQQAHCLAVPYLKSMISVGLTTMASCGYDLLNAIQGKQNLRILCIGHGGGSLPLFLASKIQGANVDIVEIDPLVISASIQAMGFPAFSVMTASGERAFARPESIDDVMWKGIHERLFLYELDAEDFVCNTTNLYDMIFIDAYDGDDIFPNKLWDPNSTFLEALSKRLHPKHGTVVVNLHSDSDLLTSDGSVPSVLEHILPMGKYVSQIGRAYKDVLTGDGSSSDESSGLGFTVAVPWVCNTSLVVCKGFEMNCEYLDRDLLMNTLISKSLEVERLLKLPFSCLEYIKRGFVLID
Homology
[Close]
BLAST of CmaCh06G012930.1 vs. TAIR 10
Match: AT4G13330.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 454.9 bits (1169), Expect = 7.2e-128
Identity = 236/412 (57.28%), Postives = 295/412 (71.60%), Query Frame = 0 

Query: 24  IEDEGDWFYASEWWGNDYDGDGDGRTVFSSTSEKGNGVVSVLSYPSSRPNGLHWPGTGRW 83
           I+DEGDWFY+ EWW    D    G TV  + S KGNGVVSV+++PSS P+   W  T +W
Sbjct: 34  IKDEGDWFYSPEWW----DPQDGGYTVSRAVSNKGNGVVSVVAHPSSLPSRDSWGETEKW 93

Query: 84  LQQRYAELCPGC---KNGERFGILGYQWRVLRFNDNTRQSTAKVMAAYRESKPESIFLMQ 143
           L++RY E+ P     KNG RF +LGYQWR LRFND+TRQST KVMAA R  +P S+F MQ
Sbjct: 94  LEKRYMEIIPRDTEEKNG-RFNVLGYQWRSLRFNDDTRQSTVKVMAACRTLQPSSVFYMQ 153

Query: 144 QAHCLAVPYLKSMISVGLTTMASCGYDLLNAIQGKQNLRILCIGHGGGSLPLFLASKIQG 203
           Q HCLAVPYLKSM+SVGLT++A+  +D+ +   G + +R+LCIGHGGGSLPLF+A  I G
Sbjct: 154 QPHCLAVPYLKSMVSVGLTSLAASKFDMRSVAIGDKQMRVLCIGHGGGSLPLFIAKHILG 213

Query: 204 ANVDIVEIDPLVISASIQAMGFPAFSVMTASGERAFARPESIDDVMWKGIHERLFLYELD 263
           A VDIVE+DPLVIS S++AMGFPAFSVMTA+G+R    PE ID VMW GIHERL LYE  
Sbjct: 214 AVVDIVELDPLVISESVRAMGFPAFSVMTATGKRVLPTPEIIDQVMWGGIHERLSLYESK 273

Query: 264 AEDFVC-NTTNLYDMIFIDAYDGDDIFPNKLWDPNSTFLEALSKRLHPKHGTVVVNLHSD 323
           AEDF+  N +N YD+IF+DAYDG DIFP+ LWD +S F++ALSK LH +HGT+VVNLHSD
Sbjct: 274 AEDFILRNQSNTYDLIFMDAYDGADIFPHSLWDSSSVFMKALSKTLHHEHGTLVVNLHSD 333

Query: 324 SDLLTSDGSVPSVLEHILPMGKYVSQIGRAYKDVLTGDGSSSDESSGLGFTVAVPWVCNT 383
           +D+   D S   V       GKYV ++G+AYK      G   +E +GL F   VPW+CN 
Sbjct: 334 ADISDIDRSNEGV-----TTGKYVRKVGKAYK-----KGLLENERNGLVFACEVPWLCNV 393

Query: 384 SLVVCKGFEMNCEYLDRDLLMNTLISKSLEVERLLKLPFSCLEYIKRGFVLI 432
           SLVV +G  M  E  DR+   + L+  SLEV+R+L+LPFSCL+Y+K G  +I
Sbjct: 394 SLVVSRG--MGSEGRDREKTKSNLMKTSLEVDRVLRLPFSCLDYLKTGLAII 428

The following BLAST results are available for this feature:
BLAST of CmaCh06G012930.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G012930.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G13330.17.2e-12857.28S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 110..353
e-value: 3.3E-37
score: 130.2
NoneNo IPR availablePANTHERPTHR12176:SF56OSJNBA0004N05.3 PROTEINcoord: 18..425
NoneNo IPR availablePANTHERPTHR12176SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEINcoord: 18..425
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 172..321

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh06G012930CmaCh06G012930gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh06G012930.1:exon:1016CmaCh06G012930.1:exon:1016exon
CmaCh06G012930.1:exon:1017CmaCh06G012930.1:exon:1017exon
CmaCh06G012930.1:exon:1018CmaCh06G012930.1:exon:1018exon
CmaCh06G012930.1:exon:1019CmaCh06G012930.1:exon:1019exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh06G012930.1:five_prime_utrCmaCh06G012930.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh06G012930.1:cdsCmaCh06G012930.1:cdsCDS
CmaCh06G012930.1:cdsCmaCh06G012930.1:cds_2CDS
CmaCh06G012930.1:cdsCmaCh06G012930.1:cds_3CDS
CmaCh06G012930.1:cdsCmaCh06G012930.1:cds_4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh06G012930.1:three_prime_utrCmaCh06G012930.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh06G012930.1CmaCh06G012930.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006747 FAD biosynthetic process
biological_process GO:0032259 methylation
biological_process GO:0009231 riboflavin biosynthetic process
molecular_function GO:0005524 ATP binding
molecular_function GO:0003919 FMN adenylyltransferase activity
molecular_function GO:0008168 methyltransferase activity