CmaCh00G003080 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G003080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ATP synthase subunit alpha, chloroplastic
Location	Cma_Chr00: 23227870 .. 23228147 (+)
RNA-Seq Expression	CmaCh00G003080
Synteny	CmaCh00G003080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAGGTGAAATTTCAGCTTCTGACTCTCGGTTAATTGAATACCCCGCTCCTAGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAACAGGACTTATTGCTATTGATGCAATGATTCCTATCGATCGTGGTCAGCAAGAATTAATTATTGGGGACAGGCAGACCCGTAAAACTGCAGTAGCCACGGATATGATTCTGAATCAGCAAGGGCAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCCTCTTCTGTGGCTAAGTAG

mRNA sequence

ATGGCCGAGGTGAAATTTCAGCTTCTGACTCTCGGACTTATTGCTATTGATGCAATGATTCCTATCGATCGTGGTCAGCAAGAATTAATTATTGGGGACAGGCAGACCCGTAAAACTGCAGTAGCCACGGATATGATTCTGAATCAGCAAGGGCAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCCTCTTCTGTGGCTAAGTAG

Coding sequence (CDS)

ATGGCCGAGGTGAAATTTCAGCTTCTGACTCTCGGACTTATTGCTATTGATGCAATGATTCCTATCGATCGTGGTCAGCAAGAATTAATTATTGGGGACAGGCAGACCCGTAAAACTGCAGTAGCCACGGATATGATTCTGAATCAGCAAGGGCAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCCTCTTCTGTGGCTAAGTAG

Protein sequence

MAEVKFQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKASSVAK

Homology

[Close]

BLAST of CmaCh00G003080 vs. ExPASy Swiss-Prot
Match: P06450 (ATP synthase subunit alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=atpA PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.4e-22
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIP+ RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. ExPASy Swiss-Prot
Match: A4QJI4 (ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.3e-22
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAID+MIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. ExPASy Swiss-Prot
Match: A4QK03 (ATP synthase subunit alpha, chloroplastic OS=Arabis hirsuta OX=78191 GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.3e-22
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAID+MIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. ExPASy Swiss-Prot
Match: P56757 (ATP synthase subunit alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpA PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.3e-22
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAID+MIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. ExPASy Swiss-Prot
Match: Q8S8Y3 (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna OX=33113 GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.3e-22
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAID+MIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. ExPASy TrEMBL
Match: A0A0G3F3C2 (ATP synthase subunit alpha OS=Rosmarinus officinalis OX=39367 GN=atpA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. ExPASy TrEMBL
Match: A0A7H0R1C6 (ATP synthase subunit alpha, chloroplastic OS=Viola philippica OX=316493 GN=atpA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. ExPASy TrEMBL
Match: A0A7L9D964 (ATP synthase subunit alpha OS=Primula prenantha subsp. morsheadiana OX=2763001 GN=atpA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. ExPASy TrEMBL
Match: A0A6G7GE45 (ATP synthase subunit alpha, chloroplastic OS=Primula filchnerae OX=170921 GN=atpA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. ExPASy TrEMBL
Match: A0A6M3WBF0 (ATP synthase subunit alpha, chloroplastic OS=Salvia yunnanensis OX=342062 GN=atpA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. NCBI nr
Match: KAG8391629.1 (hypothetical protein BUALT_Bualt01G0207200 [Buddleja alternifolia])

HSP 1 Score: 105.1 bits (261), Expect = 2.4e-19
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAR 208

[Close]

BLAST of CmaCh00G003080 vs. NCBI nr
Match: QOJ51104.1 (ATP synthase CF1 alpha subunit [Primula sp. XJW-2020])

HSP 1 Score: 104.8 bits (260), Expect = 3.2e-19
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. NCBI nr
Match: YP_009916553.1 (ATP synthase CF1 alpha subunit [Primula moupinensis] >ASM91684.1 ATP synthase CF1 alpha subunit [Primula moupinensis])

HSP 1 Score: 104.8 bits (260), Expect = 3.2e-19
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. NCBI nr
Match: YP_009259772.1 (ATP synthase CF1 alpha subunit [Leitneria floridana] >ANC29174.1 ATP synthase CF1 alpha subunit [Leitneria floridana])

HSP 1 Score: 104.8 bits (260), Expect = 3.2e-19
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. NCBI nr
Match: YP_010130274.1 (ATP synthase CF1 alpha subunit [Dodartia orientalis] >QPZ51192.1 ATP synthase CF1 alpha subunit [Dodartia orientalis])

HSP 1 Score: 104.8 bits (260), Expect = 3.2e-19
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAIDAMIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 103.6 bits (257), Expect = 6.6e-23
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   FQLLTLGLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQQGQNVICVYVAIGQKA 65
           ++ L  GLIAID+MIPI RGQ+ELIIGDRQT KTAVATD ILNQQGQNVICVYVAIGQKA
Sbjct: 144 YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKA 203

Query: 66  SSVAK 71
           SSVA+
Sbjct: 204 SSVAQ 208

[Close]

BLAST of CmaCh00G003080 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 70.5 bits (171), Expect = 6.2e-13
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 12  GLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQ---------QGQNVICVYVAIG 71
           GL A+D+++PI RGQ+EL+IGDRQT KT +A D ILNQ         + + + CVYVAIG
Sbjct: 421 GLKAVDSLVPIGRGQRELLIGDRQTGKTTIAIDTILNQKQINSRATSESETMYCVYVAIG 480

[Close]

BLAST of CmaCh00G003080 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 67.8 bits (164), Expect = 4.0e-12
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 12  GLIAIDAMIPIDRGQQELIIGDRQTRKTAVATDMILNQ---------QGQNVICVYVAIG 71
           GL A+D+++PI RGQ+EL+IG RQT KT +A D ILNQ         + + + CVYVAIG
Sbjct: 151 GLKAVDSLVPIGRGQRELLIGGRQTGKTTIAIDTILNQKQINSRATSESETMYCVYVAIG 210

The following BLAST results are available for this feature:

BLAST of CmaCh00G003080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P06450	5.4e-22	83.08	ATP synthase subunit alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=atpA P...	[more]
A4QJI4	9.3e-22	83.08	ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum OX=72657 GN...	[more]
A4QK03	9.3e-22	83.08	ATP synthase subunit alpha, chloroplastic OS=Arabis hirsuta OX=78191 GN=atpA PE=...	[more]
P56757	9.3e-22	83.08	ATP synthase subunit alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atp...	[more]
Q8S8Y3	9.3e-22	83.08	ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna OX=33113 GN=atpA ...	[more]

BLAST of CmaCh00G003080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0G3F3C2	1.5e-19	84.62	ATP synthase subunit alpha OS=Rosmarinus officinalis OX=39367 GN=atpA PE=3 SV=1	[more]
A0A7H0R1C6	1.5e-19	84.62	ATP synthase subunit alpha, chloroplastic OS=Viola philippica OX=316493 GN=atpA ...	[more]
A0A7L9D964	1.5e-19	84.62	ATP synthase subunit alpha OS=Primula prenantha subsp. morsheadiana OX=2763001 G...	[more]
A0A6G7GE45	1.5e-19	84.62	ATP synthase subunit alpha, chloroplastic OS=Primula filchnerae OX=170921 GN=atp...	[more]
A0A6M3WBF0	1.5e-19	84.62	ATP synthase subunit alpha, chloroplastic OS=Salvia yunnanensis OX=342062 GN=atp...	[more]

BLAST of CmaCh00G003080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8391629.1	2.4e-19	84.62	hypothetical protein BUALT_Bualt01G0207200 [Buddleja alternifolia]	[more]
QOJ51104.1	3.2e-19	84.62	ATP synthase CF1 alpha subunit [Primula sp. XJW-2020]	[more]
YP_009916553.1	3.2e-19	84.62	ATP synthase CF1 alpha subunit [Primula moupinensis] >ASM91684.1 ATP synthase CF...	[more]
YP_009259772.1	3.2e-19	84.62	ATP synthase CF1 alpha subunit [Leitneria floridana] >ANC29174.1 ATP synthase CF...	[more]
YP_010130274.1	3.2e-19	84.62	ATP synthase CF1 alpha subunit [Dodartia orientalis] >QPZ51192.1 ATP synthase CF...	[more]

BLAST of CmaCh00G003080 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00120.1	6.6e-23	83.08	ATP synthase subunit alpha	[more]
AT2G07698.1	6.2e-13	52.94	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	4.0e-12	51.47	ATP synthase subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	PFAM	PF00006	ATP-synt_ab	coord: 12..69 e-value: 1.0E-11 score: 45.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..70 e-value: 1.7E-20 score: 75.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 4..69
None	No IPR available	PANTHER	PTHR48082:SF4	ATP SYNTHASE SUBUNIT ALPHA	coord: 6..70
None	No IPR available	PANTHER	PTHR48082	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 6..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G003080.1	CmaCh00G003080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism