CmaCh00G002890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	non-specific lipid-transfer protein-like
Location	Cma_Chr00: 22612057 .. 22612909 (-)
RNA-Seq Expression	CmaCh00G002890
Synteny	CmaCh00G002890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGATATAAAAACACACAAAATCGTAAACCCACCAAGTGTTTGTAAAAATTCCCAAGTGAAAAATGTCAGGAATCTACAATCTCCGCTTGATGATCAGTGCACTAACCTTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCGCCATGTTTGAGCTTCATCAAAGGCAGCGACGGAGGGTTTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGATCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATTCCAGTTCAAATTCCTCCCATTGACAATTCCACTGACTGCTCAGAGTAATCAAATTAACATTTCCTTTTCCCTTTTCCTTCGCGCCATGAATCTAAAATGCATTTTCAAGGGACAAATTAAAAAGAAAAATGCGTTGGCTATGATATTGGATGCTAATATTTTGGTGTTGGTGTGTATTGGGATGCAGGGTTGAAGGCTTTGAATTTGGAAGTGGCATGTCAAATGAGGTTGGGAATTGCCATCATCAATGATCCCAATCAACATAAACCAAGCCAAAATCCCATATGATGTTCTTAAGTTTCTCTTCGTTTCAAAATAAGATTGAGTCTTGGTCTCAATAATCCTTATTTACTTCTTAATAATACTCTAATAACGATTACCAATAATCATAATTTCATAACCGTTCATCAATTTCTTCCCATTTTAGTATATTTTAAAAATTTC

mRNA sequence

ACTGATATAAAAACACACAAAATCGTAAACCCACCAAGTGTTTGTAAAAATTCCCAAGTGAAAAATGTCAGGAATCTACAATCTCCGCTTGATGATCAGTGCACTAACCTTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCGCCATGTTTGAGCTTCATCAAAGGCAGCGACGGAGGGTTTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGATCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATTCCAGTTCAAATTCCTCCCATTGACAATTCCACTGACTGCTCAGAGGTTGAAGGCTTTGAATTTGGAAGTGGCATGTCAAATGAGGTTGGGAATTGCCATCATCAATGATCCCAATCAACATAAACCAAGCCAAAATCCCATATGATGTTCTTAAGTTTCTCTTCGTTTCAAAATAAGATTGAGTCTTGGTCTCAATAATCCTTATTTACTTCTTAATAATACTCTAATAACGATTACCAATAATCATAATTTCATAACCGTTCATCAATTTCTTCCCATTTTAGTATATTTTAAAAATTTC

Coding sequence (CDS)

ATGTCAGGAATCTACAATCTCCGCTTGATGATCAGTGCACTAACCTTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCGCCATGTTTGAGCTTCATCAAAGGCAGCGACGGAGGGTTTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGATCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATTCCAGTTCAAATTCCTCCCATTGACAATTCCACTGACTGCTCAGAGGTTGAAGGCTTTGAATTTGGAAGTGGCATGTCAAATGAGGTTGGGAATTGCCATCATCAATGA

Protein sequence

MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEVEGFEFGSGMSNEVGNCHHQ

Homology

[Close]

BLAST of CmaCh00G002890 vs. ExPASy Swiss-Prot
Match: O04004 (Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia OX=4212 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 36  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           +C  V   L+PC  F+        G+ P  +CC+GV  L    KTK D+V +C CIK+  
Sbjct: 29  TCDTVQNILAPCAGFL-------TGQEPSKACCTGVNNLNNSRKTKADRVAVCNCIKELT 88

Query: 96  SMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 132
             I AYDP R+P +   CG+    P +D + DCS++
Sbjct: 89  KSI-AYDPKRMPLLSTKCGVKPDFPAVDKNLDCSKL 116

[Close]

BLAST of CmaCh00G002890 vs. ExPASy Swiss-Prot
Match: P55958 (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica OX=33127 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 41/129 (31.78%), Postives = 63/129 (48.84%), Query Frame = 0


Query: 11  ISALTFIAML---TSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSC 70
           ++AL  IA     TSS   A +      +C  V Q++ PCL F+KG +     + P   C
Sbjct: 6   MAALVVIAAALAWTSSAEPAPAPAPGEEACGKVVQDIMPCLHFVKGEE-----KEPSKEC 65

Query: 71  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 130
           CSG  KL+ + KT   K + C+CI ++   I       +  +P+ C I   +PPI    D
Sbjct: 66  CSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFD 125

Query: 131 CSEVEGFEF 137
           CS+++   F
Sbjct: 126 CSKIQSTIF 129

[Close]

BLAST of CmaCh00G002890 vs. ExPASy Swiss-Prot
Match: Q43871 (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare OX=4513 GN=CW18 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-11
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 0


Query: 8   RLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSC 67
           R   + L  +A++ + ++VA    +   +C  V+  L PC ++ KGS     G +P   C
Sbjct: 3   RTAATKLALVALVAAMLLVAADAAI---TCGQVSSALGPCAAYAKGS-----GTSPSAGC 62

Query: 68  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 127
           CSGV +LA  A++  DK   C C+K   S+ GAY+  R   IP  CG+ V    I  S D
Sbjct: 63  CSGVKRLAGLARSTADKQATCRCLK---SVAGAYNAGRAAGIPSRCGVSVPY-TISASVD 114

Query: 128 CSEV 132
           CS++
Sbjct: 123 CSKI 114

[Close]

BLAST of CmaCh00G002890 vs. ExPASy Swiss-Prot
Match: Q9ZPW9 (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 35/98 (35.71%), Postives = 49/98 (50.00%), Query Frame = 0


Query: 36  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           SC +V Q+L PC+S++    G     NPP +CC GV  LAA   T  DK   C+CIK   
Sbjct: 27  SCSVVLQDLQPCVSYLTSGSG-----NPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 86

Query: 96  SMIGAYDPNRIPSIPEGCG--IPVQIPPIDNSTDCSEV 132
           + +    P    ++   CG  +PV   P   + DC+ V
Sbjct: 87  NSV-TVKPELAQALASNCGASLPVDASP---TVDCTTV 115

[Close]

BLAST of CmaCh00G002890 vs. ExPASy Swiss-Prot
Match: A2ZHF1 (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=LTP PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-08
Identity = 38/122 (31.15%), Postives = 55/122 (45.08%), Query Frame = 0


Query: 10  MISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCS 69
           M  A   +  L +++++A        +C  V   + PCL++ +G      G  P  +CCS
Sbjct: 1   MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARG------GAGPSAACCS 60

Query: 70  GVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCS 129
           GV  L A A T  D+   C C+K +   I   +     SIP  CG+ V    I  S DCS
Sbjct: 61  GVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPY-TISASIDCS 115

Query: 130 EV 132
            V
Sbjct: 121 RV 115

[Close]

BLAST of CmaCh00G002890 vs. TAIR 10
Match: AT2G18370.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 35/98 (35.71%), Postives = 49/98 (50.00%), Query Frame = 0


Query: 36  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           SC +V Q+L PC+S++    G     NPP +CC GV  LAA   T  DK   C+CIK   
Sbjct: 27  SCSVVLQDLQPCVSYLTSGSG-----NPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 86

Query: 96  SMIGAYDPNRIPSIPEGCG--IPVQIPPIDNSTDCSEV 132
           + +    P    ++   CG  +PV   P   + DC+ V
Sbjct: 87  NSV-TVKPELAQALASNCGASLPVDASP---TVDCTTV 115

[Close]

BLAST of CmaCh00G002890 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 19  MLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADA 78
           +L   +++AL       SC  V  +L PCLS++  + GG +    P  CC+G+T L + A
Sbjct: 5   LLAVCLVLALHCGEAAVSCNTVIADLYPCLSYV--TQGGPV----PTLCCNGLTTLKSQA 64

Query: 79  KTKNDKVDLCECIKKSLSMIGAYDPNRIPS---IPEGCGI--PVQIPPIDNSTDCSEVE 133
           +T  D+  +C CIK ++  +    P  I +   +P  CG+  P +  P   STDC  ++
Sbjct: 65  QTSVDRQGVCRCIKSAIGGL-TLSPRTIQNALELPSKCGVDLPYKFSP---STDCDSIQ 113

[Close]

BLAST of CmaCh00G002890 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 51.6 bits (122), Expect = 6.4e-07
Identity = 37/115 (32.17%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 19  MLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADA 78
           +L   +++AL       SC  V  +L PCLS++  + GG +    P  CC+G+T L + A
Sbjct: 5   LLAVCLVLALHCGEAAVSCNTVIADLYPCLSYV--TQGGPV----PTLCCNGLTTLKSQA 64

Query: 79  KTKNDKVDLCECIKKSLSMIGAYDPNRIPS---IPEGCGI--PVQIPPIDNSTDC 129
           +T  D+  +C CIK ++  +    P  I +   +P  CG+  P +  P   STDC
Sbjct: 65  QTSVDRQGVCRCIKSAIGGL-TLSPRTIQNALELPSKCGVDLPYKFSP---STDC 109

[Close]

BLAST of CmaCh00G002890 vs. TAIR 10
Match: AT2G15325.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-06
Identity = 25/89 (28.09%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 44  LSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDP 103
           L+PCL ++           P P CCSG+ K+    KT +D+ D+C C+    ++  A D 
Sbjct: 38  LTPCLRYLWAPPEA----KPSPECCSGLDKVNKGVKTYDDRHDMCICLSSEAAITSA-DQ 97

Query: 104 NRIPSIPEGCGIPVQIPPIDNSTDCSEVE 133
            +  ++P+ C + +   P+    DCS ++
Sbjct: 98  YKFDNLPKLCNVAL-FAPVGPKFDCSTIK 120

[Close]

BLAST of CmaCh00G002890 vs. TAIR 10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06
Identity = 29/99 (29.29%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 36  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           SC  V   L PC+ ++    GG +    P SCC+G+  L+  A + +DK  +C CIK  +
Sbjct: 25  SCNAVQANLYPCVVYV--VQGGAI----PYSCCNGIRMLSKQATSASDKQGVCRCIKSVV 84

Query: 96  SMI--GAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEVE 133
             +   +    +  ++P  CG+ +    ID ST+C+ ++
Sbjct: 85  GRVSYSSIYLKKAAALPGKCGVKLPY-KIDPSTNCNSIK 116

The following BLAST results are available for this feature:

BLAST of CmaCh00G002890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04004	1.3e-12	37.50	Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia OX=4212 PE=1 SV=1	[more]
P55958	2.4e-11	31.78	Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica OX=33127 PE...	[more]
Q43871	4.1e-11	34.68	Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare OX=4513 GN=CW18 PE=1...	[more]
Q9ZPW9	3.0e-09	35.71	Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE...	[more]
A2ZHF1	7.3e-08	31.15	Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]

BLAST of CmaCh00G002890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18370.1	2.1e-10	35.71	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G08770.1	1.3e-07	31.09	lipid transfer protein 6	[more]
AT3G08770.2	6.4e-07	32.17	lipid transfer protein 6	[more]
AT2G15325.1	1.8e-06	28.09	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G01870.1	2.4e-06	29.29	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 119..130 score: 39.62 coord: 100..117 score: 24.79 coord: 83..98 score: 30.38 coord: 36..52 score: 35.11
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 11..131
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 109..131
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 37..128 e-value: 3.8E-6 score: 36.4
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 16..118 e-value: 6.7E-5 score: 22.9
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 35..132 e-value: 1.1E-23 score: 85.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 36..130
None	No IPR available	PANTHER	PTHR33076:SF73	NON-SPECIFIC LIPID-TRANSFER PROTEIN	coord: 11..131
None	No IPR available	CDD	cd01960	nsLTP1	coord: 36..129 e-value: 3.75935E-25 score: 90.1017

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002890.1	CmaCh00G002890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding