CmaCh00G001030 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGCAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACAAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAAGTATATTTCCTCATTAATCTCATACATTGTTAATTTTTTTCTAATTATATTTAAACTTAAATTTGATGAATACAATTTAAATTTTAAATTTTATAAATAATTTATTTATTTTATCTTTAATTGTTTGAAATTTGTTTGTGTTTAAGATGGGTGCTAAATTATTAGTATTATTTTTTGGTACATTAAATTACTTTTATAGGTAATAATTTAGGGATGCTATTACTTTGATGTCTTAAAGTGGTAGGAAGCTTTTATGATTTTATTTTTTTAATTTATCCAAAATATCTAATATCATTGGAGATAATTGCTCTAACTTATAATATACTATCTAGAAAATCTAAGACTATGCTTGATTTATATCTTATTATTTAATTCCTAATTTATATTTGGTTTTAGAATATAGTTTCATTGTTCTTCTTTATTTTAATAGGGTTCTTCTTTATTTTAATAGGATTCTTGAGTTAAAGTTAGCGAAGTGACATACGAAGATATCAAGGGAACTTCAGCCACTGAAATAGCAATCAATTTTGATTGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCGCTAAAGCTTCA ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGCAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACAAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGTTAGCGAAGTGACATACGAAGATATCAAGGGAACTTCAGCCACTGAAATAGCAATCAATTTTGATTGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCGCTAAAGCTTCA ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGCAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACAAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGTTAGCGAAGTGACATACGAAGATATCAAGGGAACTTCAGCCACTGAAATAGCAATCAATTTTGATTGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCGCTAAAGCTTCA MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENHIAKAS Homology
BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37 Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = 0
BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 1.9e-27 Identity = 66/122 (54.10%), Postives = 78/122 (63.93%), Query Frame = 0
BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot
Match: Q9SFB7 (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2) HSP 1 Score: 95.5 bits (236), Expect = 4.2e-19 Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 0
BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot
Match: P35336 (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18 Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 0
BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot
Match: P05117 (Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.6e-18 Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 0
BLAST of CmaCh00G001030 vs. ExPASy TrEMBL
Match: A0A6J1IEV2 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473552 PE=3 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 5.7e-59 Identity = 114/125 (91.20%), Postives = 117/125 (93.60%), Query Frame = 0
BLAST of CmaCh00G001030 vs. ExPASy TrEMBL
Match: A0A6J1HFX3 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111463942 PE=3 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56 Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0
BLAST of CmaCh00G001030 vs. ExPASy TrEMBL
Match: A0A6J1F3B8 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111439594 PE=3 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54 Identity = 109/125 (87.20%), Postives = 112/125 (89.60%), Query Frame = 0
BLAST of CmaCh00G001030 vs. ExPASy TrEMBL
Match: A0A6J1I843 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111471802 PE=3 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50 Identity = 101/125 (80.80%), Postives = 107/125 (85.60%), Query Frame = 0
BLAST of CmaCh00G001030 vs. ExPASy TrEMBL
Match: A0A6J1IF00 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472165 PE=3 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50 Identity = 101/125 (80.80%), Postives = 107/125 (85.60%), Query Frame = 0
BLAST of CmaCh00G001030 vs. NCBI nr
Match: XP_022974795.1 (polygalacturonase-like [Cucurbita maxima]) HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58 Identity = 114/125 (91.20%), Postives = 117/125 (93.60%), Query Frame = 0
BLAST of CmaCh00G001030 vs. NCBI nr
Match: XP_022963687.1 (polygalacturonase-like [Cucurbita moschata]) HSP 1 Score: 227.3 bits (578), Expect = 7.1e-56 Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0
BLAST of CmaCh00G001030 vs. NCBI nr
Match: XP_023521278.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54 Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 0
BLAST of CmaCh00G001030 vs. NCBI nr
Match: XP_022932973.1 (polygalacturonase-like [Cucurbita moschata]) HSP 1 Score: 221.9 bits (564), Expect = 3.0e-54 Identity = 109/125 (87.20%), Postives = 112/125 (89.60%), Query Frame = 0
BLAST of CmaCh00G001030 vs. NCBI nr
Match: XP_023522679.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53 Identity = 108/125 (86.40%), Postives = 110/125 (88.00%), Query Frame = 0
BLAST of CmaCh00G001030 vs. TAIR 10
Match: AT2G43880.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 148.3 bits (373), Expect = 3.9e-36 Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = 0
BLAST of CmaCh00G001030 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 147.1 bits (370), Expect = 8.7e-36 Identity = 67/118 (56.78%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh00G001030 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 144.4 bits (363), Expect = 5.7e-35 Identity = 70/124 (56.45%), Postives = 88/124 (70.97%), Query Frame = 0
BLAST of CmaCh00G001030 vs. TAIR 10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 140.2 bits (352), Expect = 1.1e-33 Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0
BLAST of CmaCh00G001030 vs. TAIR 10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 139.8 bits (351), Expect = 1.4e-33 Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|