CmaCh00G001030 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001030
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	polygalacturonase-like
Location	Cma_Chr00: 4730505 .. 4731330 (-)
RNA-Seq Expression	CmaCh00G001030
Synteny	CmaCh00G001030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGCAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACAAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAAGTATATTTCCTCATTAATCTCATACATTGTTAATTTTTTTCTAATTATATTTAAACTTAAATTTGATGAATACAATTTAAATTTTAAATTTTATAAATAATTTATTTATTTTATCTTTAATTGTTTGAAATTTGTTTGTGTTTAAGATGGGTGCTAAATTATTAGTATTATTTTTTGGTACATTAAATTACTTTTATAGGTAATAATTTAGGGATGCTATTACTTTGATGTCTTAAAGTGGTAGGAAGCTTTTATGATTTTATTTTTTTAATTTATCCAAAATATCTAATATCATTGGAGATAATTGCTCTAACTTATAATATACTATCTAGAAAATCTAAGACTATGCTTGATTTATATCTTATTATTTAATTCCTAATTTATATTTGGTTTTAGAATATAGTTTCATTGTTCTTCTTTATTTTAATAGGGTTCTTCTTTATTTTAATAGGATTCTTGAGTTAAAGTTAGCGAAGTGACATACGAAGATATCAAGGGAACTTCAGCCACTGAAATAGCAATCAATTTTGATTGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCGCTAAAGCTTCA

mRNA sequence

ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGCAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACAAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGTTAGCGAAGTGACATACGAAGATATCAAGGGAACTTCAGCCACTGAAATAGCAATCAATTTTGATTGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCGCTAAAGCTTCA

Coding sequence (CDS)

ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGCAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACAAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGTTAGCGAAGTGACATACGAAGATATCAAGGGAACTTCAGCCACTGAAATAGCAATCAATTTTGATTGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCGCTAAAGCTTCA

Protein sequence

MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENHIAKAS

Homology

[Close]

BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37
Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 2   EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E EE GV NVTVK+ TF+ T+NG RIKSWGRPS GFA N+ FQH  M NV+NPI+IDQ+Y
Sbjct: 252 EQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHY 311

Query: 62  CPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENHI 119
           CP  K CP       +S+VTYEDI GTSATE+A+ FDCSP + C  + L D+KLTY+N  
Sbjct: 312 CPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQA 371

[Close]

BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-27
Identity = 66/122 (54.10%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 4   EEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCP 63
           EE GV NVTV +  F  T NG RIK+WG+ SN FA N+ FQHI M  VKNPIIIDQ+YC 
Sbjct: 260 EEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCL 319

Query: 64  HLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENHIAK 119
           H K CP       VS V YEDI GTS TE+A+  DCS    CTG+ + D+ L   +  A+
Sbjct: 320 H-KPCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQ 379

[Close]

BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot
Match: Q9SFB7 (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-19
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 8   VHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKD 67
           V NV V  +T   T NG RIK+W +  +G A N+ FQ IIM NV NPIII+Q+YC  ++ 
Sbjct: 304 VSNVVVNKATLIGTTNGVRIKTW-QGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEA 363

Query: 68  CP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLT--YENHIAKAS 119
           CP       VS V Y++I+GTS+  IA+ F CS    C G+S+ ++KL    +  ++KAS
Sbjct: 364 CPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLVDQTQQDVSKAS 422

[Close]

BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot
Match: P35336 (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 0


Query: 5   EDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPH 64
           E  V +V V  +    T NG RIK+W +  +G A+N+ FQ++ M NV+NPIIIDQNYC  
Sbjct: 319 EAHVSDVVVNGAKLCGTTNGVRIKTW-QGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQ 378

Query: 65  LKDC-------PVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENHIA 116
            K C        V  V Y++IKGT A+ +AI FDCS    C G+ L D+ L  E   A
Sbjct: 379 DKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAA 435

[Close]

BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot
Match: P05117 (Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-18
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 8   VHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKD 67
           V NVTV  +      NG RIK+W +  +G A+N+ F ++ M +VK PIIIDQNYC  ++ 
Sbjct: 309 VSNVTVNEAKIIGAENGVRIKTW-QGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEP 368

Query: 68  C-------PVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYEN 113
           C        V  V YE+IKGTSAT++AI FDCS    C G+ + +I L  E+
Sbjct: 369 CIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGES 419

[Close]

BLAST of CmaCh00G001030 vs. ExPASy TrEMBL
Match: A0A6J1IEV2 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473552 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 5.7e-59
Identity = 114/125 (91.20%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           M+AEEDGVHN+TVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN
Sbjct: 259 MKAEEDGVHNITVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 318

Query: 61  YCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENH 119
           YCPHLKDCP       VSEVTYEDIKGTSAT+IAINFDCSPTNHCTGL LIDIKLTYENH
Sbjct: 319 YCPHLKDCPGQDSGVKVSEVTYEDIKGTSATKIAINFDCSPTNHCTGLRLIDIKLTYENH 378

[Close]

BLAST of CmaCh00G001030 vs. ExPASy TrEMBL
Match: A0A6J1HFX3 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111463942 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           +EAEEDGVHNVTVKSSTFT T+NG RIKSWGRPSNGFATNVHFQHI MDNVKNPIIIDQN
Sbjct: 259 IEAEEDGVHNVTVKSSTFTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQN 318

Query: 61  YCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENH 119
           YCPHLKDCP       VSEVTYEDIKGTSATEIAI FDCSPTNHCTGL+LIDI LTYENH
Sbjct: 319 YCPHLKDCPGQDSGVKVSEVTYEDIKGTSATEIAIKFDCSPTNHCTGLNLIDINLTYENH 378

[Close]

BLAST of CmaCh00G001030 vs. ExPASy TrEMBL
Match: A0A6J1F3B8 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111439594 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 109/125 (87.20%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           MEAEE+GVHNVTVKSSTFT T+NG RIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQN
Sbjct: 262 MEAEENGVHNVTVKSSTFTGTQNGVRIKSWGRPSNGSATKVYFQHIIMDNVKNPIIIDQN 321

Query: 61  YCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENH 119
           YCPHLKDCP       VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSL DI LTYENH
Sbjct: 322 YCPHLKDCPGQASGVKVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLKDINLTYENH 381

[Close]

BLAST of CmaCh00G001030 vs. ExPASy TrEMBL
Match: A0A6J1I843 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111471802 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50
Identity = 101/125 (80.80%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           ++AEEDGVHNVT+  STFT T+NG RIKSWGRPS GFAT V+FQHIIMDNVKNPIIIDQN
Sbjct: 262 IKAEEDGVHNVTLTLSTFTGTQNGVRIKSWGRPSRGFATKVYFQHIIMDNVKNPIIIDQN 321

Query: 61  YCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENH 119
           YCPH  DCP       VSEVTYEDIKGTSATEIAINFDCSP NHCTGLS+ DI LTYENH
Sbjct: 322 YCPHETDCPGQASGVKVSEVTYEDIKGTSATEIAINFDCSPINHCTGLSMKDINLTYENH 381

[Close]

BLAST of CmaCh00G001030 vs. ExPASy TrEMBL
Match: A0A6J1IF00 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472165 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50
Identity = 101/125 (80.80%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           ++AEEDGVHNVT+  STFT T+NG RIKSWGRPS GFAT V+FQHIIMDNVKNPIIIDQN
Sbjct: 262 IKAEEDGVHNVTLTLSTFTGTQNGVRIKSWGRPSRGFATKVYFQHIIMDNVKNPIIIDQN 321

Query: 61  YCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENH 119
           YCPH  DCP       VSEVTYEDIKGTSATEIAINFDCSP NHCTGLS+ DI LTYENH
Sbjct: 322 YCPHETDCPGQASGVKVSEVTYEDIKGTSATEIAINFDCSPINHCTGLSMKDINLTYENH 381

[Close]

BLAST of CmaCh00G001030 vs. NCBI nr
Match: XP_022974795.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 114/125 (91.20%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           M+AEEDGVHN+TVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN
Sbjct: 259 MKAEEDGVHNITVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 318

Query: 61  YCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENH 119
           YCPHLKDCP       VSEVTYEDIKGTSAT+IAINFDCSPTNHCTGL LIDIKLTYENH
Sbjct: 319 YCPHLKDCPGQDSGVKVSEVTYEDIKGTSATKIAINFDCSPTNHCTGLRLIDIKLTYENH 378

[Close]

BLAST of CmaCh00G001030 vs. NCBI nr
Match: XP_022963687.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 227.3 bits (578), Expect = 7.1e-56
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           +EAEEDGVHNVTVKSSTFT T+NG RIKSWGRPSNGFATNVHFQHI MDNVKNPIIIDQN
Sbjct: 259 IEAEEDGVHNVTVKSSTFTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQN 318

Query: 61  YCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENH 119
           YCPHLKDCP       VSEVTYEDIKGTSATEIAI FDCSPTNHCTGL+LIDI LTYENH
Sbjct: 319 YCPHLKDCPGQDSGVKVSEVTYEDIKGTSATEIAIKFDCSPTNHCTGLNLIDINLTYENH 378

[Close]

BLAST of CmaCh00G001030 vs. NCBI nr
Match: XP_023521278.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           +E EEDGVHN+TVKSSTFT T+NG RIKSWGRPSNGFATNV+FQHIIMDNVKNPIIIDQN
Sbjct: 230 IEVEEDGVHNITVKSSTFTGTQNGVRIKSWGRPSNGFATNVYFQHIIMDNVKNPIIIDQN 289

Query: 61  YCPHLKDCP--VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENHIAKAS 119
           YCP  K+CP  VSEVTY+DIKGTSATEIAINFDCSPTNHCTGLSLIDI LTYENHIAKAS
Sbjct: 290 YCPPFKECPIKVSEVTYQDIKGTSATEIAINFDCSPTNHCTGLSLIDINLTYENHIAKAS 349

[Close]

BLAST of CmaCh00G001030 vs. NCBI nr
Match: XP_022932973.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 221.9 bits (564), Expect = 3.0e-54
Identity = 109/125 (87.20%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           MEAEE+GVHNVTVKSSTFT T+NG RIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQN
Sbjct: 262 MEAEENGVHNVTVKSSTFTGTQNGVRIKSWGRPSNGSATKVYFQHIIMDNVKNPIIIDQN 321

Query: 61  YCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENH 119
           YCPHLKDCP       VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSL DI LTYENH
Sbjct: 322 YCPHLKDCPGQASGVKVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLKDINLTYENH 381

[Close]

BLAST of CmaCh00G001030 vs. NCBI nr
Match: XP_023522679.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 108/125 (86.40%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           ME EEDGVHNVTVKSS FT T+NG RIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQN
Sbjct: 264 METEEDGVHNVTVKSSIFTGTQNGVRIKSWGRPSNGSATKVYFQHIIMDNVKNPIIIDQN 323

Query: 61  YCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENH 119
           YCPHLKDCP       VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSL DI LTYENH
Sbjct: 324 YCPHLKDCPGQASGVKVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLKDINLTYENH 383

[Close]

BLAST of CmaCh00G001030 vs. TAIR 10
Match: AT2G43880.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 148.3 bits (373), Expect = 3.9e-36
Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 3   AEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYC 62
           A E+GV NVTV SS FT+T+NG RIK+W RPS GF  NV F+++IM+NV+NP+IIDQNYC
Sbjct: 254 ANEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVENPVIIDQNYC 313

Query: 63  PHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTY 111
           P+ K CP       +S VT+ +IKGTS T IA+  DCS +NHCTGL L DIKLTY
Sbjct: 314 PNGKGCPRQSSGVKISGVTFANIKGTSTTPIAMKLDCSGSNHCTGLRLQDIKLTY 368

[Close]

BLAST of CmaCh00G001030 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 147.1 bits (370), Expect = 8.7e-36
Identity = 67/118 (56.78%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 2   EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E+ E GV N+TVK++TFT T NG RIKSW RPSNGFA N+ FQH +M+NV+NPI+IDQNY
Sbjct: 247 ESVEVGVQNITVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNY 306

Query: 62  CPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYEN 113
           CP  ++CP       +S+V + DI GTSATE+ +  DCS    CTG+ + D+KLTY N
Sbjct: 307 CPGNENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDCSSKKPCTGIRIQDVKLTYRN 364

[Close]

BLAST of CmaCh00G001030 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-35
Identity = 70/124 (56.45%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 2   EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           ++ E GV NVTVK+ TFT T NG RIKSW RPS+GFA N+ FQH +M+NV+NPIIIDQNY
Sbjct: 245 DSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVENPIIIDQNY 304

Query: 62  CPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTYENHI 119
           CP   DCP       +S+V + DI GTSATE+ +  DCS    CTG+ L D+KLTY+N  
Sbjct: 305 CPD-HDCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKLTYQNKP 364

[Close]

BLAST of CmaCh00G001030 vs. TAIR 10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-33
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 2   EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           +  EDGV NVTV SS FT ++NG RIKSW RPS GF  NV FQ++IM NV+NPIIIDQNY
Sbjct: 250 QLNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPIIIDQNY 309

Query: 62  CPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTY 111
           CP  + CP       +++VTY++I+GTSAT+ A+   CS +N CTG++L DIKLTY
Sbjct: 310 CPSNQGCPTEHSGVKITQVTYKNIQGTSATQEAMKLVCSKSNPCTGITLQDIKLTY 365

[Close]

BLAST of CmaCh00G001030 vs. TAIR 10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-33
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 2   EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E +EDGV NVTV SS FT ++NG RIKSW RPSNGF   V FQ ++M NV+NPIIIDQNY
Sbjct: 250 ELKEDGVENVTVSSSVFTGSQNGVRIKSWARPSNGFVRTVFFQDLVMKNVENPIIIDQNY 309

Query: 62  CPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTY 111
           CP  + CP       +S+VTY++I+GTSAT+ A+   CS ++ CTG++L DIKLTY
Sbjct: 310 CPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTY 365

The following BLAST results are available for this feature:

BLAST of CmaCh00G001030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	2.6e-37	60.48	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	1.9e-27	54.10	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
Q9SFB7	4.2e-19	44.17	Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2	[more]
P35336	1.2e-18	44.07	Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1	[more]
P05117	1.6e-18	44.64	Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1	[more]

BLAST of CmaCh00G001030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEV2	5.7e-59	91.20	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473552 PE=3 SV=1	[more]
A0A6J1HFX3	3.5e-56	88.00	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111463942 PE=3 SV=1	[more]
A0A6J1F3B8	1.5e-54	87.20	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111439594 PE=3 SV=1	[more]
A0A6J1I843	2.8e-50	80.80	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111471802 PE=3 SV=1	[more]
A0A6J1IF00	2.8e-50	80.80	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472165 PE=3 SV=1	[more]

BLAST of CmaCh00G001030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974795.1	1.2e-58	91.20	polygalacturonase-like [Cucurbita maxima]	[more]
XP_022963687.1	7.1e-56	88.00	polygalacturonase-like [Cucurbita moschata]	[more]
XP_023521278.1	2.3e-54	88.33	polygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]
XP_022932973.1	3.0e-54	87.20	polygalacturonase-like [Cucurbita moschata]	[more]
XP_023522679.1	1.1e-53	86.40	polygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh00G001030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43880.1	3.9e-36	61.74	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	8.7e-36	56.78	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	5.7e-35	56.45	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	1.1e-33	58.62	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	1.4e-33	58.62	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 5..112 e-value: 9.4E-26 score: 90.6
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..118 e-value: 8.4E-34 score: 119.2
None	No IPR available	PANTHER	PTHR31375:SF246	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 2..112
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 2..112
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 6..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001030.1	CmaCh00G001030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098656	anion transmembrane transport
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0015698	inorganic anion transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005741	mitochondrial outer membrane
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0008308	voltage-gated anion channel activity