CmaCh00G000320 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CACTGGAAATAATATGAAATGTCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATAATACCCTATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCGCCCATTCTCTTTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTGGGGTCAAAACAATTTCAAAACAAAGAATAGCTTATTCCTCCGTCTCTTATATATATGAGTGGTTTCATCATTATAGGAATTTGTTCTATATATAAGCGGGCACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATTGGCGCTGCGCTTTTCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTTGTTTATCTCGATGAAATGGGCGGAATGACTATTCCAATTCCAAAAAGATTCACGACTTTTAGTATCTTATCAATGACTTCCCTTGCATTGCCAGGTATGAGTAGTTTTGTTGCGGAATTAATAGTCTTGGAATAATTACAAGCCAAAAATCTCTTGTAATGAGAAAAAGACTAATTACTTTGGTACATGGCAATTGGAATCTCATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATAGAAGCTTTT CACTGGAAATAATATGAAATGTCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATAATACCCTATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCGCCCATTCTCTTTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTGGGGTCAAAACAATTTCAAAACAAAGAATAGCTTATTCCTCCCGGGCACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATTGGCGCTGCGCTTTTCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTTGTTTATCTCGATGAAATGGGCGGAATGACTATTCCAATTCCAAAAAGATTCACGACTTTTAGTATCTTATCAATGACTTCCCTTGCATTGCCAGGTATGAGTAGTTTTTCTTGGAATAATTACAAGCCAAAAATCTCTTGTAATGAGAAAAAGACTAATTACTTTGGTACATGGCAATTGGAATCTCATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATAGAAGCTTTT ATGAAATGTCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATAATACCCTATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCGCCCATTCTCTTTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTGGGGTCAAAACAATTTCAAAACAAAGAATAGCTTATTCCTCCCGGGCACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATTGGCGCTGCGCTTTTCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTTGTTTATCTCGATGAAATGGGCGGAATGACTATTCCAATTCCAAAAAGATTCACGACTTTTAGTATCTTATCAATGACTTCCCTTGCATTGCCAGGTATGAGTAGTTTTTCTTGGAATAATTACAAGCCAAAAATCTCTTGTAATGAGAAAAAGACTAATTACTTTGGTACATGGCAATTGGAATCTCATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATAGAAGCTTTT MKCRISYCFCCQITDNTLYPRRGTLQYLYASSRNLIQNGSIWIGSDQYGLPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIYWRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLALPGMSSFSWNNYKPKISCNEKKTNYFGTWQLESHINSHLFIIYVTPDVLWIEAF Homology
BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot
Match: Q4VZL8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhD PE=2 SV=2) HSP 1 Score: 130.2 bits (326), Expect = 2.7e-29 Identity = 77/127 (60.63%), Postives = 84/127 (66.14%), Query Frame = 0
BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot
Match: Q09WW8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica OX=248361 GN=ndhD PE=3 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 6.8e-28 Identity = 76/127 (59.84%), Postives = 82/127 (64.57%), Query Frame = 0
BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot
Match: Q7YJT3 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Calycanthus floridus var. glaucus OX=212734 GN=ndhD PE=3 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 3.4e-27 Identity = 72/127 (56.69%), Postives = 82/127 (64.57%), Query Frame = 0
BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot
Match: P26288 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhD PE=2 SV=3) HSP 1 Score: 122.9 bits (307), Expect = 4.4e-27 Identity = 73/127 (57.48%), Postives = 82/127 (64.57%), Query Frame = 0
BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot
Match: A4QLF9 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Lepidium virginicum OX=59292 GN=ndhD PE=3 SV=2) HSP 1 Score: 122.9 bits (307), Expect = 4.4e-27 Identity = 73/127 (57.48%), Postives = 82/127 (64.57%), Query Frame = 0
BLAST of CmaCh00G000320 vs. ExPASy TrEMBL
Match: A0A6A4MX29 (Putative NADH:ubiquinone reductase (H(+)-translocating) OS=Lupinus albus OX=3870 GN=Lalb_Chr23g0274791 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 4.0e-39 Identity = 102/182 (56.04%), Postives = 118/182 (64.84%), Query Frame = 0
BLAST of CmaCh00G000320 vs. ExPASy TrEMBL
Match: A0A650F2C7 (NADH-plastoquinone oxidoreductase subunit 4 OS=Senegalia senegal OX=138043 GN=ndhD PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 8.3e-37 Identity = 107/237 (45.15%), Postives = 130/237 (54.85%), Query Frame = 0
BLAST of CmaCh00G000320 vs. ExPASy TrEMBL
Match: A0A498KQZ6 (Proton_antipo_M domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_037507 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35 Identity = 88/151 (58.28%), Postives = 101/151 (66.89%), Query Frame = 0
BLAST of CmaCh00G000320 vs. ExPASy TrEMBL
Match: A0A6H1XID1 (NADH-plastoquinone oxidoreductase subunit 4 OS=Lycoris aurea OX=152838 GN=ndhD PE=3 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 5.2e-31 Identity = 93/206 (45.15%), Postives = 112/206 (54.37%), Query Frame = 0
BLAST of CmaCh00G000320 vs. ExPASy TrEMBL
Match: A0A4Y6I5A8 (NADH-plastoquinone oxidoreductase subunit 4 OS=Teucrium mascatense OX=2172029 GN=ndhD PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 4.1e-28 Identity = 96/233 (41.20%), Postives = 122/233 (52.36%), Query Frame = 0
BLAST of CmaCh00G000320 vs. NCBI nr
Match: KAE9587536.1 (putative NADH:ubiquinone reductase (H(+)-translocating) [Lupinus albus]) HSP 1 Score: 171.4 bits (433), Expect = 8.2e-39 Identity = 102/182 (56.04%), Postives = 118/182 (64.84%), Query Frame = 0
BLAST of CmaCh00G000320 vs. NCBI nr
Match: YP_009724473.1 (NADH-plastoquinone oxidoreductase subunit 4 [Senegalia senegal] >QGT77109.1 NADH-plastoquinone oxidoreductase subunit 4 [Senegalia senegal]) HSP 1 Score: 163.7 bits (413), Expect = 1.7e-36 Identity = 107/237 (45.15%), Postives = 130/237 (54.85%), Query Frame = 0
BLAST of CmaCh00G000320 vs. NCBI nr
Match: RXI09986.1 (hypothetical protein DVH24_037507 [Malus domestica]) HSP 1 Score: 159.5 bits (402), Expect = 3.2e-35 Identity = 88/151 (58.28%), Postives = 101/151 (66.89%), Query Frame = 0
BLAST of CmaCh00G000320 vs. NCBI nr
Match: QJA15329.1 (NADH-plastoquinone oxidoreductase subunit 4 [Lycoris aurea]) HSP 1 Score: 144.4 bits (363), Expect = 1.1e-30 Identity = 93/206 (45.15%), Postives = 112/206 (54.37%), Query Frame = 0
BLAST of CmaCh00G000320 vs. NCBI nr
Match: QNH93509.1 (NADH-plastoquinone oxidoreductase subunit 4 [Enhalus acoroides]) HSP 1 Score: 134.8 bits (338), Expect = 8.5e-28 Identity = 87/187 (46.52%), Postives = 109/187 (58.29%), Query Frame = 0
BLAST of CmaCh00G000320 vs. TAIR 10
Match: ATCG01050.1 (NADH-Ubiquinone/plastoquinone (complex I) protein ) HSP 1 Score: 122.9 bits (307), Expect = 3.1e-28 Identity = 73/127 (57.48%), Postives = 82/127 (64.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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