CmaCh00G000320 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Location	Cma_Chr00: 2589445 .. 2590152 (-)
RNA-Seq Expression	CmaCh00G000320
Synteny	CmaCh00G000320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTGGAAATAATATGAAATGTCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATAATACCCTATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCGCCCATTCTCTTTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTGGGGTCAAAACAATTTCAAAACAAAGAATAGCTTATTCCTCCGTCTCTTATATATATGAGTGGTTTCATCATTATAGGAATTTGTTCTATATATAAGCGGGCACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATTGGCGCTGCGCTTTTCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTTGTTTATCTCGATGAAATGGGCGGAATGACTATTCCAATTCCAAAAAGATTCACGACTTTTAGTATCTTATCAATGACTTCCCTTGCATTGCCAGGTATGAGTAGTTTTGTTGCGGAATTAATAGTCTTGGAATAATTACAAGCCAAAAATCTCTTGTAATGAGAAAAAGACTAATTACTTTGGTACATGGCAATTGGAATCTCATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATAGAAGCTTTT

mRNA sequence

CACTGGAAATAATATGAAATGTCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATAATACCCTATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCGCCCATTCTCTTTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTGGGGTCAAAACAATTTCAAAACAAAGAATAGCTTATTCCTCCCGGGCACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATTGGCGCTGCGCTTTTCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTTGTTTATCTCGATGAAATGGGCGGAATGACTATTCCAATTCCAAAAAGATTCACGACTTTTAGTATCTTATCAATGACTTCCCTTGCATTGCCAGGTATGAGTAGTTTTTCTTGGAATAATTACAAGCCAAAAATCTCTTGTAATGAGAAAAAGACTAATTACTTTGGTACATGGCAATTGGAATCTCATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATAGAAGCTTTT

Coding sequence (CDS)

ATGAAATGTCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATAATACCCTATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCGCCCATTCTCTTTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTGGGGTCAAAACAATTTCAAAACAAAGAATAGCTTATTCCTCCCGGGCACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATTGGCGCTGCGCTTTTCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTTGTTTATCTCGATGAAATGGGCGGAATGACTATTCCAATTCCAAAAAGATTCACGACTTTTAGTATCTTATCAATGACTTCCCTTGCATTGCCAGGTATGAGTAGTTTTTCTTGGAATAATTACAAGCCAAAAATCTCTTGTAATGAGAAAAAGACTAATTACTTTGGTACATGGCAATTGGAATCTCATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATAGAAGCTTTT

Protein sequence

MKCRISYCFCCQITDNTLYPRRGTLQYLYASSRNLIQNGSIWIGSDQYGLPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIYWRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLALPGMSSFSWNNYKPKISCNEKKTNYFGTWQLESHINSHLFIIYVTPDVLWIEAF

Homology

[Close]

BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot
Match: Q4VZL8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhD PE=2 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.7e-29
Identity = 77/127 (60.63%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIY--- 109
           LP AHS+FSPWLIIVGIIQIIYAASTS GQ N K K   +   +   +    +  I    
Sbjct: 269 LPHAHSIFSPWLIIVGIIQIIYAASTSSGQRNLK-KRIAYSSVSHMGFIIIGIGSISDTG 328

Query: 110 ------------WRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLA 162
                       +  A LFFLAGTSYDRIRLVYLDEMGG+ IPIPK FTTFSILSM SLA
Sbjct: 329 LNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLA 388

[Close]

BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot
Match: Q09WW8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica OX=248361 GN=ndhD PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.8e-28
Identity = 76/127 (59.84%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIY--- 109
           LP AHS+FSPWL+IVG IQIIYAASTS GQ N K K   +   +   +    L  I    
Sbjct: 269 LPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNLK-KRIAYSSVSHMGFIIIGLGSINDTG 328

Query: 110 ------------WRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLA 162
                       +  A LFFLAGTSYDRIRLVYLDEMGGM I IPK FTTFSILSM SLA
Sbjct: 329 LNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAITIPKIFTTFSILSMASLA 388

[Close]

BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot
Match: Q7YJT3 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Calycanthus floridus var. glaucus OX=212734 GN=ndhD PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.4e-27
Identity = 72/127 (56.69%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIY--- 109
           LP AHS+FSPWL+IVG IQIIYAASTS+GQ NFK K   +   +   +    +  I    
Sbjct: 271 LPHAHSIFSPWLVIVGAIQIIYAASTSFGQRNFK-KRIAYSSVSHMGFTLIGIGSITDTG 330

Query: 110 ------------WRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLA 162
                       +  A LFFLAGTSYDRIRLVYLDEMGG+ IP+PK FT FS  SM SLA
Sbjct: 331 LNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLA 390

[Close]

BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot
Match: P26288 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhD PE=2 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 4.4e-27
Identity = 73/127 (57.48%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIY--- 109
           LP AHS+FSPWL++VG IQIIYAASTS GQ N K K   +   +   +    +S I    
Sbjct: 269 LPHAHSMFSPWLLVVGTIQIIYAASTSPGQRNLK-KRIAYSSVSHMGFIIIGISSITDPG 328

Query: 110 ------------WRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLA 162
                       +  A LFFLAGTSYDRIRLVYLDEMGGM I IPK FT F+ILSM SLA
Sbjct: 329 LNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAISIPKIFTMFTILSMASLA 388

[Close]

BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot
Match: A4QLF9 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Lepidium virginicum OX=59292 GN=ndhD PE=3 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 4.4e-27
Identity = 73/127 (57.48%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIY--- 109
           LP AHS+FSPWL++VG IQIIYAASTS GQ N K K   +   +   +    +S I    
Sbjct: 269 LPHAHSMFSPWLLVVGTIQIIYAASTSPGQRNLK-KRIAYSSVSHMGFIIIGISSITDPG 328

Query: 110 ------------WRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLA 162
                       +  A LFFLAGTSYDRIRLVYLDEMGGM I IPK FT F+ILSM SLA
Sbjct: 329 LNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAISIPKIFTMFTILSMASLA 388

[Close]

BLAST of CmaCh00G000320 vs. ExPASy TrEMBL
Match: A0A6A4MX29 (Putative NADH:ubiquinone reductase (H(+)-translocating) OS=Lupinus albus OX=3870 GN=Lalb_Chr23g0274791 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.0e-39
Identity = 102/182 (56.04%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSL-------FLPGTEWSYFTNNL 109
           LP AHS+FSPWL+I+G IQIIYAASTS GQ N K + +        F+     S     L
Sbjct: 71  LPRAHSIFSPWLMIIGSIQIIYAASTSLGQRNLKKRIAYSSVSHMGFILIGIGSLSDTGL 130

Query: 110 SWIYWRC-------AFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLAL 169
           +    +        A LFFLAGT YDR+RL+YLDEMGGM IP+PK FT FSI SM SLAL
Sbjct: 131 NGAILQIISHGFIGAALFFLAGTGYDRLRLLYLDEMGGMAIPMPKIFTIFSIFSMASLAL 190

Query: 170 PGMS-------SFSWNNYKPKISCNEKKTNYF--GTWQLESHINSHLFIIYVTPDVLWIE 209
           PGMS       +F WNNYKPKIS N+K  NYF    W   + INS+LFIIYVT DVLWI+
Sbjct: 191 PGMSGFFCRIFNFFWNNYKPKISFNDKNINYFCNSNW---NDINSYLFIIYVTADVLWIQ 249

[Close]

BLAST of CmaCh00G000320 vs. ExPASy TrEMBL
Match: A0A650F2C7 (NADH-plastoquinone oxidoreductase subunit 4 OS=Senegalia senegal OX=138043 GN=ndhD PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 8.3e-37
Identity = 107/237 (45.15%), Postives = 130/237 (54.85%), Query Frame = 0


Query: 5   ISYCFCCQITDNTL------YPRRGTLQYLYASSRNLIQNGSIWIGSDQYGL--PPAHSL 64
           ISYCFCCQI D TL      +PRRGTLQYLYA SRNLI+NGS+WIGS+ YG+  P + S+
Sbjct: 217 ISYCFCCQIADYTLTYMVTRHPRRGTLQYLYAFSRNLIKNGSVWIGSNYYGIITPRSFSI 276

Query: 65  FSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLP----------------GTEWSYFTN 124
           FS    I      + + + SW    FK KNSLFL                 GT+ S+FTN
Sbjct: 277 FSLVNSIRRNSNNLCSFNISW-STYFKKKNSLFLRISYGFHNYRNLFYKRYGTQRSHFTN 336

Query: 125 NLSWIYWRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLALPG--- 184
           N SWIYW CAF        Y+   L   +   G +    K    F  L      + G   
Sbjct: 337 NFSWIYWCCAFFLGRNELCYNTSLLSRRNGRNGYS--NAKNIHGFQYLIDGFSCIAGHER 396

Query: 185 ----MSSFSWNNYKPKISCNEKKTNYF--GTWQLESHINSHLFIIYVTPDVLWIEAF 209
               + SF WNNY+ KIS N+K TN+F  G W   + INS+LFIIYVTPDVLWI+ F
Sbjct: 397 FCCRIDSFFWNNYQSKISFNDKNTNHFCNGNW---NDINSYLFIIYVTPDVLWIQVF 447

[Close]

BLAST of CmaCh00G000320 vs. ExPASy TrEMBL
Match: A0A498KQZ6 (Proton_antipo_M domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_037507 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35
Identity = 88/151 (58.28%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 17  TLYPRRGTLQYLYASSRNLIQNGSIWIGSDQYGLPPAHSLFSPWLIIV------GIIQII 76
           T +P RGTLQYLYA SRNLI+NGS+WIGSDQYG+      +   L+         +    
Sbjct: 3   TRHPWRGTLQYLYAFSRNLIKNGSVWIGSDQYGIITPRPFYILSLVDYSRHNSNNLCSFN 62

Query: 77  YAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIYWRCAFLFFLAGTSYDRIRLVYLDE 136
            + S +W    ++T+          S+FTNNLS IYWRCA  FFLAGTSYDRIRLVYLDE
Sbjct: 63  ISRSANWFYKRYRTQR---------SHFTNNLSRIYWRCA--FFLAGTSYDRIRLVYLDE 122

Query: 137 MGGMTIPIPKRFTTFSILSMTSLALPGMSSF 162
           MGGM I IPK FTTFSILSM SLALPGMS F
Sbjct: 123 MGGMAIAIPKIFTTFSILSMASLALPGMSGF 142

[Close]

BLAST of CmaCh00G000320 vs. ExPASy TrEMBL
Match: A0A6H1XID1 (NADH-plastoquinone oxidoreductase subunit 4 OS=Lycoris aurea OX=152838 GN=ndhD PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.2e-31
Identity = 93/206 (45.15%), Postives = 112/206 (54.37%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIY--- 109
           LP AHS+F PWL+IVG +QIIYAASTS+GQ NFK K   +   +   +    +  I    
Sbjct: 270 LPHAHSIFCPWLVIVGTMQIIYAASTSFGQRNFK-KRIAYSSASHMGFTIIGIGSITDMG 329

Query: 110 ------------WRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLA 169
                       +  A LFFL GTS DRIRLVYLDEMGG++IP+PK F+ FS  SM S+A
Sbjct: 330 LNGAILQILSHGFIGAVLFFLVGTSCDRIRLVYLDEMGGVSIPMPKIFSMFSSFSMASVA 389

Query: 170 LPGMSSF--------------------------------SWNNYKPKISCNEKKTNYF-- 207
           LPGMS F                                  NNY+PKIS N +  NY   
Sbjct: 390 LPGMSGFVAESVVFFGIITSPKYLLMPKMLITNCGISSIFGNNYQPKISFNAQNANYLCN 449

[Close]

BLAST of CmaCh00G000320 vs. ExPASy TrEMBL
Match: A0A4Y6I5A8 (NADH-plastoquinone oxidoreductase subunit 4 OS=Teucrium mascatense OX=2172029 GN=ndhD PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.1e-28
Identity = 96/233 (41.20%), Postives = 122/233 (52.36%), Query Frame = 0


Query: 8   CFCCQITDN------TLYPRRGTLQYLYASSRNLIQNGSIWIGSDQYGL--PPAHSLFSP 67
           CFCCQI ++      T YP RGTL+YLYASSRNLI+NGSIWI SD+YG+  P + S+FS 
Sbjct: 220 CFCCQIANHTPTYMVTRYPWRGTLKYLYASSRNLIKNGSIWISSDKYGIISPRSFSIFS- 279

Query: 68  WLIIVGIIQIIYAASTSWGQN-NFKTKNSLFL----------------PGTEWSYFTNNL 127
            L+           S +  ++  FK KNSLFL                 G + S FTNNL
Sbjct: 280 -LVNNSRRNANNLCSFNISRSTKFKKKNSLFLCISYGFHNYRNWFYHGYGAQRSPFTNNL 339

Query: 128 SWIYWRCAFLFFLAGTSYDRIRLVYLDEMGGMTIP-------IPKRFTTFSILSMTSLAL 187
           SWIYW CA  FFL   +  +         G  + P       + + F     ++      
Sbjct: 340 SWIYWCCA--FFLGRNNLRKNTSCLSRRNGWNSYPNAKNIHDVQQLFDGLPCITRHEWFC 399

Query: 188 PGMSSFSWNNYKPKISCNEKKTNYF--GTWQLESHINSHLFIIYVTPDVLWIE 207
             ++S  W NYK KI  N+K  NYF  G W   + INS+LFIIYVT DVLWI+
Sbjct: 400 CRINSLFWTNYKFKICFNDKTPNYFCNGNW---NDINSYLFIIYVTSDVLWIQ 445

[Close]

BLAST of CmaCh00G000320 vs. NCBI nr
Match: KAE9587536.1 (putative NADH:ubiquinone reductase (H(+)-translocating) [Lupinus albus])

HSP 1 Score: 171.4 bits (433), Expect = 8.2e-39
Identity = 102/182 (56.04%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSL-------FLPGTEWSYFTNNL 109
           LP AHS+FSPWL+I+G IQIIYAASTS GQ N K + +        F+     S     L
Sbjct: 71  LPRAHSIFSPWLMIIGSIQIIYAASTSLGQRNLKKRIAYSSVSHMGFILIGIGSLSDTGL 130

Query: 110 SWIYWRC-------AFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLAL 169
           +    +        A LFFLAGT YDR+RL+YLDEMGGM IP+PK FT FSI SM SLAL
Sbjct: 131 NGAILQIISHGFIGAALFFLAGTGYDRLRLLYLDEMGGMAIPMPKIFTIFSIFSMASLAL 190

Query: 170 PGMS-------SFSWNNYKPKISCNEKKTNYF--GTWQLESHINSHLFIIYVTPDVLWIE 209
           PGMS       +F WNNYKPKIS N+K  NYF    W   + INS+LFIIYVT DVLWI+
Sbjct: 191 PGMSGFFCRIFNFFWNNYKPKISFNDKNINYFCNSNW---NDINSYLFIIYVTADVLWIQ 249

[Close]

BLAST of CmaCh00G000320 vs. NCBI nr
Match: YP_009724473.1 (NADH-plastoquinone oxidoreductase subunit 4 [Senegalia senegal] >QGT77109.1 NADH-plastoquinone oxidoreductase subunit 4 [Senegalia senegal])

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-36
Identity = 107/237 (45.15%), Postives = 130/237 (54.85%), Query Frame = 0


Query: 5   ISYCFCCQITDNTL------YPRRGTLQYLYASSRNLIQNGSIWIGSDQYGL--PPAHSL 64
           ISYCFCCQI D TL      +PRRGTLQYLYA SRNLI+NGS+WIGS+ YG+  P + S+
Sbjct: 217 ISYCFCCQIADYTLTYMVTRHPRRGTLQYLYAFSRNLIKNGSVWIGSNYYGIITPRSFSI 276

Query: 65  FSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLP----------------GTEWSYFTN 124
           FS    I      + + + SW    FK KNSLFL                 GT+ S+FTN
Sbjct: 277 FSLVNSIRRNSNNLCSFNISW-STYFKKKNSLFLRISYGFHNYRNLFYKRYGTQRSHFTN 336

Query: 125 NLSWIYWRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLALPG--- 184
           N SWIYW CAF        Y+   L   +   G +    K    F  L      + G   
Sbjct: 337 NFSWIYWCCAFFLGRNELCYNTSLLSRRNGRNGYS--NAKNIHGFQYLIDGFSCIAGHER 396

Query: 185 ----MSSFSWNNYKPKISCNEKKTNYF--GTWQLESHINSHLFIIYVTPDVLWIEAF 209
               + SF WNNY+ KIS N+K TN+F  G W   + INS+LFIIYVTPDVLWI+ F
Sbjct: 397 FCCRIDSFFWNNYQSKISFNDKNTNHFCNGNW---NDINSYLFIIYVTPDVLWIQVF 447

[Close]

BLAST of CmaCh00G000320 vs. NCBI nr
Match: RXI09986.1 (hypothetical protein DVH24_037507 [Malus domestica])

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-35
Identity = 88/151 (58.28%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 17  TLYPRRGTLQYLYASSRNLIQNGSIWIGSDQYGLPPAHSLFSPWLIIV------GIIQII 76
           T +P RGTLQYLYA SRNLI+NGS+WIGSDQYG+      +   L+         +    
Sbjct: 3   TRHPWRGTLQYLYAFSRNLIKNGSVWIGSDQYGIITPRPFYILSLVDYSRHNSNNLCSFN 62

Query: 77  YAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIYWRCAFLFFLAGTSYDRIRLVYLDE 136
            + S +W    ++T+          S+FTNNLS IYWRCA  FFLAGTSYDRIRLVYLDE
Sbjct: 63  ISRSANWFYKRYRTQR---------SHFTNNLSRIYWRCA--FFLAGTSYDRIRLVYLDE 122

Query: 137 MGGMTIPIPKRFTTFSILSMTSLALPGMSSF 162
           MGGM I IPK FTTFSILSM SLALPGMS F
Sbjct: 123 MGGMAIAIPKIFTTFSILSMASLALPGMSGF 142

[Close]

BLAST of CmaCh00G000320 vs. NCBI nr
Match: QJA15329.1 (NADH-plastoquinone oxidoreductase subunit 4 [Lycoris aurea])

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-30
Identity = 93/206 (45.15%), Postives = 112/206 (54.37%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIY--- 109
           LP AHS+F PWL+IVG +QIIYAASTS+GQ NFK K   +   +   +    +  I    
Sbjct: 270 LPHAHSIFCPWLVIVGTMQIIYAASTSFGQRNFK-KRIAYSSASHMGFTIIGIGSITDMG 329

Query: 110 ------------WRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLA 169
                       +  A LFFL GTS DRIRLVYLDEMGG++IP+PK F+ FS  SM S+A
Sbjct: 330 LNGAILQILSHGFIGAVLFFLVGTSCDRIRLVYLDEMGGVSIPMPKIFSMFSSFSMASVA 389

Query: 170 LPGMSSF--------------------------------SWNNYKPKISCNEKKTNYF-- 207
           LPGMS F                                  NNY+PKIS N +  NY   
Sbjct: 390 LPGMSGFVAESVVFFGIITSPKYLLMPKMLITNCGISSIFGNNYQPKISFNAQNANYLCN 449

[Close]

BLAST of CmaCh00G000320 vs. NCBI nr
Match: QNH93509.1 (NADH-plastoquinone oxidoreductase subunit 4 [Enhalus acoroides])

HSP 1 Score: 134.8 bits (338), Expect = 8.5e-28
Identity = 87/187 (46.52%), Postives = 109/187 (58.29%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTK---NSLF----------------L 109
           LP AHS+FSPW +IV  IQIIYAASTS+GQ N K +   +S++                L
Sbjct: 4   LPHAHSIFSPWFVIVETIQIIYAASTSFGQRNCKKRIAYSSVYHMSLRMIGIGSITNAGL 63

Query: 110 PGTEWSYFTNNLSWIYWRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSM 169
            G      ++ L       A LFFL GT  DR  LVYLDEMGG++IP+PK FT FS  SM
Sbjct: 64  NGAVLQLISHGLIG-----AALFFLGGTGCDRTHLVYLDEMGGVSIPMPKLFTLFSSFSM 123

Query: 170 TSLALPGMSSFSWNN---YKPKISCNEKKTNYF--GTWQLE------SHINSHLFIIYVT 207
           TSLALPGMS F   +   Y  ++   +K T+YF  G W         + I+S+LFIIY T
Sbjct: 124 TSLALPGMSGFVAESVVFYPVQLFMPKKSTHYFCNGNWNDNFCNGNWNDIHSYLFIIYAT 183

[Close]

BLAST of CmaCh00G000320 vs. TAIR 10
Match: ATCG01050.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-28
Identity = 73/127 (57.48%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 50  LPPAHSLFSPWLIIVGIIQIIYAASTSWGQNNFKTKNSLFLPGTEWSYFTNNLSWIY--- 109
           LP AHS+FSPWL++VG IQIIYAASTS GQ N K K   +   +   +    +S I    
Sbjct: 275 LPHAHSMFSPWLLVVGTIQIIYAASTSPGQRNLK-KRIAYSSVSHMGFIIIGISSITDPG 334

Query: 110 ------------WRCAFLFFLAGTSYDRIRLVYLDEMGGMTIPIPKRFTTFSILSMTSLA 162
                       +  A LFFLAGTSYDRIRLVYLDEMGGM I IPK FT F+ILSM SLA
Sbjct: 335 LNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAISIPKIFTMFTILSMASLA 394

The following BLAST results are available for this feature:

BLAST of CmaCh00G000320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL8	2.7e-29	60.63	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659...	[more]
Q09WW8	6.8e-28	59.84	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica OX=248361 ...	[more]
Q7YJT3	3.4e-27	56.69	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Calycanthus floridus va...	[more]
P26288	4.4e-27	57.48	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Arabidopsis thaliana OX...	[more]
A4QLF9	4.4e-27	57.48	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Lepidium virginicum OX=...	[more]

BLAST of CmaCh00G000320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A4MX29	4.0e-39	56.04	Putative NADH:ubiquinone reductase (H(+)-translocating) OS=Lupinus albus OX=3870...	[more]
A0A650F2C7	8.3e-37	45.15	NADH-plastoquinone oxidoreductase subunit 4 OS=Senegalia senegal OX=138043 GN=nd...	[more]
A0A498KQZ6	1.6e-35	58.28	Proton_antipo_M domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_03...	[more]
A0A6H1XID1	5.2e-31	45.15	NADH-plastoquinone oxidoreductase subunit 4 OS=Lycoris aurea OX=152838 GN=ndhD P...	[more]
A0A4Y6I5A8	4.1e-28	41.20	NADH-plastoquinone oxidoreductase subunit 4 OS=Teucrium mascatense OX=2172029 GN...	[more]

BLAST of CmaCh00G000320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE9587536.1	8.2e-39	56.04	putative NADH:ubiquinone reductase (H(+)-translocating) [Lupinus albus]	[more]
YP_009724473.1	1.7e-36	45.15	NADH-plastoquinone oxidoreductase subunit 4 [Senegalia senegal] >QGT77109.1 NADH...	[more]
RXI09986.1	3.2e-35	58.28	hypothetical protein DVH24_037507 [Malus domestica]	[more]
QJA15329.1	1.1e-30	45.15	NADH-plastoquinone oxidoreductase subunit 4 [Lycoris aurea]	[more]
QNH93509.1	8.5e-28	46.52	NADH-plastoquinone oxidoreductase subunit 4 [Enhalus acoroides]	[more]

BLAST of CmaCh00G000320 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01050.1	3.1e-28	57.48	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003918	NADH:ubiquinone oxidoreductase	PANTHER	PTHR43507	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4	coord: 109..161
IPR003918	NADH:ubiquinone oxidoreductase	PANTHER	PTHR43507	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4	coord: 50..85
None	No IPR available	PANTHER	PTHR43507:SF12	NAD(P)H-QUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLASTIC	coord: 109..161 coord: 50..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000320.1	CmaCh00G000320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity