Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAGATAAGTTGTCCACTTCTCGCTTGCATTGGAAGGCAGAATATTTGTCCTTTATGTATCTTAGACTTCCACTTGGTGGTTATCTAAAGAAAGCTTCATTTTGGATGCCGATAATTGATAAGATCCATAAGAAATTGGATAGGTGGAATTGGAAATGCTTTAATCTTTTCCAAGGTGGAAGACTAACTTTGTGCAAAGCAGTGTTCAGTGGTTAAAGAGACCCTCCCAAGCATGTGTCTAGGTGCTAGGTGCAGGTCTTGCACCTCGCCATGAAAAAGCCAGGCACACAAAATAAGCTGCACAATGTAGGCACCCGTCTTATGTGAAGCCCCAAGGGCTTTTCTTCATTTTGAAACAAATAATAATAATTAGAATTTTTAACTTTACAAAGCCAAAATACAAAATTCCTTGTGCTTGGCATTTTTTTTTTCACATTCCCATTTCAACTATGTTTTCTCTTTTTTATGTAGTACTTTTATATATGGTGCGCCTATAAAACACGCTTTATTTGCACCTTGCACTTTACCGTGCCTTCAACTTTAAAAAACATGGGCAGTGTTACAAATATTCCCAGTTATTGATTCTTAAAGCCAGCTAAGGTGATTAAGGTTATAGAAAGAATTATTAAAGCTTTCTTTTGGAAAGGTCTTAAAGGGAGTAAGATAAATCATCTGGCTAAATACGATTTGATTTCCAAATCTCAATCAGATGGGGGTGTCGGCTTTGGGGTTTGAAGATTAGAAATCTAGCATTGTTGGCTAAATGATGCTGGAGATACTTTCATGGAGTTGTTTATAAACTTGGTACTGATAGTAGAATTTCTTTTTGGAATGATCCTTGGCTTGAGAATTAGGCTTTGAATTCAAATTTTCTTAGTTTATTCAGAATCTTGTTATTGCCCAATGGTTCAGTTTCTTATCATTGGGATGCAGATACTCAATCATGGACAGCCTCTTTAAGACGAATGTTGGAAGATGAAGAACAGATTTTATTGAGTTCTTTATTGGATAAAAGAGTGGCTTCGCAGCCAGATTGTCGAAGTTGGAGCTTGGACCCTTCTGGAAAATTAATGTTAGCTCCCTTTCCAAGCATTTAG
mRNA sequence
ATGGAAAAAGATAAGTTGTCCACTTCTCGCTTGCATTGGAAGGCAGAATATTTGTCCTTTATGTATCTTAGACTTCCACTTGGTGGTTATCTAAAGAAAGCTTCATTTTGGATGCCGATAATTGATAAGATCCATAAGAAATTGGATAGGTGGAATTGGAAATGCTTTAATCTTTTCCAAGGTGGAAGACTAACTTTGTGCAAAGCAGTGCAGGTCTTGCACCTCGCCATGAAAAAGCCAGGCACACAAAATAAGCTGCACAATCCAGCTAAGGTGATTAAGGTTATAGAAAGAATTATTAAAGCTTTCTTTTGGAAAGGTCTTAAAGGGAGTAAGATAAATCATCTGGCTAAATACGATTTGATTTCCAAATCTCAATCAGATGGGGGTGTCGGCTTTGGGGCTTTGAATTCAAATTTTCTTAGTTTATTCAGAATCTTGTTATTGCCCAATGGTTCAGTTTCTTATCATTGGGATGCAGATACTCAATCATGGACAGCCTCTTTAAGACGAATGTTGGAAGATGAAGAACAGATTTTATTGAGTTCTTTATTGGATAAAAGAGTGGCTTCGCAGCCAGATTGTCGAAGTTGGAGCTTGGACCCTTCTGGAAAATTAATGTTAGCTCCCTTTCCAAGCATTTAG
Coding sequence (CDS)
ATGGAAAAAGATAAGTTGTCCACTTCTCGCTTGCATTGGAAGGCAGAATATTTGTCCTTTATGTATCTTAGACTTCCACTTGGTGGTTATCTAAAGAAAGCTTCATTTTGGATGCCGATAATTGATAAGATCCATAAGAAATTGGATAGGTGGAATTGGAAATGCTTTAATCTTTTCCAAGGTGGAAGACTAACTTTGTGCAAAGCAGTGCAGGTCTTGCACCTCGCCATGAAAAAGCCAGGCACACAAAATAAGCTGCACAATCCAGCTAAGGTGATTAAGGTTATAGAAAGAATTATTAAAGCTTTCTTTTGGAAAGGTCTTAAAGGGAGTAAGATAAATCATCTGGCTAAATACGATTTGATTTCCAAATCTCAATCAGATGGGGGTGTCGGCTTTGGGGCTTTGAATTCAAATTTTCTTAGTTTATTCAGAATCTTGTTATTGCCCAATGGTTCAGTTTCTTATCATTGGGATGCAGATACTCAATCATGGACAGCCTCTTTAAGACGAATGTTGGAAGATGAAGAACAGATTTTATTGAGTTCTTTATTGGATAAAAGAGTGGCTTCGCAGCCAGATTGTCGAAGTTGGAGCTTGGACCCTTCTGGAAAATTAATGTTAGCTCCCTTTCCAAGCATTTAG
Protein sequence
MEKDKLSTSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGALNSNFLSLFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEEQILLSSLLDKRVASQPDCRSWSLDPSGKLMLAPFPSI
Homology
BLAST of Clc09G16325 vs. NCBI nr
Match:
TYJ97221.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])
HSP 1 Score: 134.4 bits (337), Expect = 1.1e-27
Identity = 95/271 (35.06%), Postives = 124/271 (45.76%), Query Frame = 0
Query: 7 STSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTL 66
+ R+ KAE L +YL LPLGGY + FW P+ID+IHKKLDR WK FN+ +GGR L
Sbjct: 40 TADRMSCKAENLPIVYLSLPLGGYPQHQDFWQPVIDRIHKKLDR--WKHFNIPRGGRQIL 99
Query: 67 CKAV----QVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYDLI 126
C AV Q +L+ K +P +E+I + FFW+G GSK+NHL K++L+
Sbjct: 100 CNAVLTSLQTYYLSHK------MWQSP------LEKITRNFFWEGSSGSKLNHLVKWNLV 159
Query: 127 SKSQSDGGVGFGAL---NSNFLS------------------------------------- 186
S S G+G GAL NS L+
Sbjct: 160 SLSLKGVGLGLGALKTHNSALLAKWGWRFAMEDFSFGRKIICSIHGKEPFDWFTLEKFGN 219
Query: 187 -----------------------LFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEE-- 207
L RI LLP G V+ HWD T SW+ RR L+D E
Sbjct: 220 SLRSPWFSISKVWRSVESLALTKLGRIALLPQGLVADHWDFATLSWSLPFRRSLKDAEIV 279
BLAST of Clc09G16325 vs. NCBI nr
Match:
XP_038880332.1 (uncharacterized protein LOC120071973 [Benincasa hispida])
HSP 1 Score: 127.1 bits (318), Expect = 1.8e-25
Identity = 65/148 (43.92%), Postives = 98/148 (66.22%), Query Frame = 0
Query: 1 MEKDKLST--SRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNL 60
+E++K+ + ++L+ K ++L MYL LPLGGY K SFW P+IDK+ KLD+ W+ FNL
Sbjct: 140 IEENKMLSVAAQLNCKVKHLPLMYLGLPLGGYPKNVSFWQPVIDKLQGKLDK--WRRFNL 199
Query: 61 FQGGRLTLCKAVQ----VLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKIN 120
+GG+ TLCK+V +L++ P KV+ ++ER +K FFW+G KG KIN
Sbjct: 200 SRGGKATLCKSVHSNLPTYYLSL--------FLLPEKVLGIMERTMKNFFWEGHKGGKIN 259
Query: 121 HLAKYDLISKSQSDGGVGFGALNSNFLS 143
HL K++L++K+Q DGG+G G L + L+
Sbjct: 260 HLVKWELVTKAQEDGGLGLGGLRARNLA 277
BLAST of Clc09G16325 vs. NCBI nr
Match:
KAA0051398.1 (Integrase, catalytic core [Cucumis melo var. makuwa])
HSP 1 Score: 105.5 bits (262), Expect = 5.7e-19
Identity = 61/136 (44.85%), Postives = 76/136 (55.88%), Query Frame = 0
Query: 3 KDKLSTSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGG 62
K + S L+ K E L +Y LPLGGY K A FW P++DK KKL WK NL +GG
Sbjct: 720 KTSSAASMLNCKIEKLPLLYQGLPLGGYPKSAHFWQPVLDKEQKKLH--IWKRLNLSRGG 779
Query: 63 RLTLCKAVQVLHLAMKKPGT--QNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYD 122
RLTLC +V + P T + P KV E ++ F +G GSK+NHL K D
Sbjct: 780 RLTLCSSV------LSNPPTYFMSTFLMPYKVSNSTESTMRNFIREGNNGSKLNHLVKLD 839
Query: 123 LISKSQSDGGVGFGAL 137
L+SKSQ DGG+G L
Sbjct: 840 LVSKSQGDGGLGLDKL 847
BLAST of Clc09G16325 vs. NCBI nr
Match:
TYK31262.1 (DENN domain and WD repeat-containing protein SCD1-like [Cucumis melo var. makuwa])
HSP 1 Score: 102.1 bits (253), Expect = 6.3e-18
Identity = 63/155 (40.65%), Postives = 84/155 (54.19%), Query Frame = 0
Query: 32 KKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAK 91
++ +FW +IDKI KK D+ W+ FNL +GGR TLC V LA + P K
Sbjct: 13 RQVAFWQSVIDKIRKKFDK--WRRFNLPRGGRTTLCNFV----LANLPTCCMSSFAIPDK 72
Query: 92 VIKVIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGALNSNFLSLFRILLLPN 151
V+ IERII+ F W+G GS+INHL D+ AL+ LFRI LLPN
Sbjct: 73 VVSSIERIIRNFLWEG-HGSEINHLWVGDIPL-----------ALSICSPKLFRIALLPN 132
Query: 152 GSVSYHWDADTQSWTASLRRMLEDEEQILLSSLLD 187
G V+ HWD SW+ R+LED+E + +L+
Sbjct: 133 GLVADHWDHLISSWSIIFHRLLEDDEILEYQDMLE 149
BLAST of Clc09G16325 vs. NCBI nr
Match:
RVW55296.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 97.4 bits (241), Expect = 1.5e-16
Identity = 72/230 (31.30%), Postives = 109/230 (47.39%), Query Frame = 0
Query: 11 LHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAV 70
L KA +YL LPLGG K + FW P+I++I ++LD W K + F GGR+TL ++
Sbjct: 2 LDCKASGWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQ-KAYLSF-GGRITLIQSC 61
Query: 71 QVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGG 130
+ H+ + PA V IER+ + F W G+ K +HL +D++ K +S GG
Sbjct: 62 -LTHMPCY---FLSLFKIPASVAAKIERMQREFLWSGIGEGKRDHLVNWDVVCKPKSRGG 121
Query: 131 VGFGALNSNFLSLF----------------RILLLPNGSVSYHWDADTQ-------SWTA 190
+GFG ++ ++L +++L GS S W+ + W A
Sbjct: 122 LGFGKISMRNVALLGKWLWRYPREGSALWHQVILSIYGSHSNGWNVNNNVRWSHRCPWKA 181
Query: 191 ------SLRRMLEDEEQILLSSLLDKRVASQPDCRSWSLDPSGKLMLAPF 212
S +LED E ++ S S PD RSWS+ PSG + F
Sbjct: 182 LHLSSKSFPSLLEDLESLMRSLDRLHISPSVPDKRSWSISPSGLFTVKSF 225
BLAST of Clc09G16325 vs. ExPASy TrEMBL
Match:
A0A5D3BF26 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00080 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 5.5e-28
Identity = 95/271 (35.06%), Postives = 124/271 (45.76%), Query Frame = 0
Query: 7 STSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTL 66
+ R+ KAE L +YL LPLGGY + FW P+ID+IHKKLDR WK FN+ +GGR L
Sbjct: 40 TADRMSCKAENLPIVYLSLPLGGYPQHQDFWQPVIDRIHKKLDR--WKHFNIPRGGRQIL 99
Query: 67 CKAV----QVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYDLI 126
C AV Q +L+ K +P +E+I + FFW+G GSK+NHL K++L+
Sbjct: 100 CNAVLTSLQTYYLSHK------MWQSP------LEKITRNFFWEGSSGSKLNHLVKWNLV 159
Query: 127 SKSQSDGGVGFGAL---NSNFLS------------------------------------- 186
S S G+G GAL NS L+
Sbjct: 160 SLSLKGVGLGLGALKTHNSALLAKWGWRFAMEDFSFGRKIICSIHGKEPFDWFTLEKFGN 219
Query: 187 -----------------------LFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEE-- 207
L RI LLP G V+ HWD T SW+ RR L+D E
Sbjct: 220 SLRSPWFSISKVWRSVESLALTKLGRIALLPQGLVADHWDFATLSWSLPFRRSLKDAEIV 279
BLAST of Clc09G16325 vs. ExPASy TrEMBL
Match:
A0A5A7U808 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001400 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 2.7e-19
Identity = 61/136 (44.85%), Postives = 76/136 (55.88%), Query Frame = 0
Query: 3 KDKLSTSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGG 62
K + S L+ K E L +Y LPLGGY K A FW P++DK KKL WK NL +GG
Sbjct: 720 KTSSAASMLNCKIEKLPLLYQGLPLGGYPKSAHFWQPVLDKEQKKLH--IWKRLNLSRGG 779
Query: 63 RLTLCKAVQVLHLAMKKPGT--QNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYD 122
RLTLC +V + P T + P KV E ++ F +G GSK+NHL K D
Sbjct: 780 RLTLCSSV------LSNPPTYFMSTFLMPYKVSNSTESTMRNFIREGNNGSKLNHLVKLD 839
Query: 123 LISKSQSDGGVGFGAL 137
L+SKSQ DGG+G L
Sbjct: 840 LVSKSQGDGGLGLDKL 847
BLAST of Clc09G16325 vs. ExPASy TrEMBL
Match:
A0A5D3E5T3 (DENN domain and WD repeat-containing protein SCD1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005520 PE=4 SV=1)
HSP 1 Score: 102.1 bits (253), Expect = 3.0e-18
Identity = 63/155 (40.65%), Postives = 84/155 (54.19%), Query Frame = 0
Query: 32 KKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAK 91
++ +FW +IDKI KK D+ W+ FNL +GGR TLC V LA + P K
Sbjct: 13 RQVAFWQSVIDKIRKKFDK--WRRFNLPRGGRTTLCNFV----LANLPTCCMSSFAIPDK 72
Query: 92 VIKVIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGALNSNFLSLFRILLLPN 151
V+ IERII+ F W+G GS+INHL D+ AL+ LFRI LLPN
Sbjct: 73 VVSSIERIIRNFLWEG-HGSEINHLWVGDIPL-----------ALSICSPKLFRIALLPN 132
Query: 152 GSVSYHWDADTQSWTASLRRMLEDEEQILLSSLLD 187
G V+ HWD SW+ R+LED+E + +L+
Sbjct: 133 GLVADHWDHLISSWSIIFHRLLEDDEILEYQDMLE 149
BLAST of Clc09G16325 vs. ExPASy TrEMBL
Match:
A0A438F5X5 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1210 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 7.5e-17
Identity = 72/230 (31.30%), Postives = 109/230 (47.39%), Query Frame = 0
Query: 11 LHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAV 70
L KA +YL LPLGG K + FW P+I++I ++LD W K + F GGR+TL ++
Sbjct: 2 LDCKASGWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQ-KAYLSF-GGRITLIQSC 61
Query: 71 QVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGG 130
+ H+ + PA V IER+ + F W G+ K +HL +D++ K +S GG
Sbjct: 62 -LTHMPCY---FLSLFKIPASVAAKIERMQREFLWSGIGEGKRDHLVNWDVVCKPKSRGG 121
Query: 131 VGFGALNSNFLSLF----------------RILLLPNGSVSYHWDADTQ-------SWTA 190
+GFG ++ ++L +++L GS S W+ + W A
Sbjct: 122 LGFGKISMRNVALLGKWLWRYPREGSALWHQVILSIYGSHSNGWNVNNNVRWSHRCPWKA 181
Query: 191 ------SLRRMLEDEEQILLSSLLDKRVASQPDCRSWSLDPSGKLMLAPF 212
S +LED E ++ S S PD RSWS+ PSG + F
Sbjct: 182 LHLSSKSFPSLLEDLESLMRSLDRLHISPSVPDKRSWSISPSGLFTVKSF 225
BLAST of Clc09G16325 vs. ExPASy TrEMBL
Match:
A0A438JNC2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_518 PE=4 SV=1)
HSP 1 Score: 95.1 bits (235), Expect = 3.7e-16
Identity = 74/246 (30.08%), Postives = 116/246 (47.15%), Query Frame = 0
Query: 1 MEKDKLS--TSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNL 60
+E++ LS L KA +YL LPLGG K + FW P+I++I ++LD W K +
Sbjct: 195 LEQNHLSRLAEMLDCKASGWPILYLGLPLGGNPKTSGFWDPVIERISRRLDGWQ-KTYLS 254
Query: 61 FQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAK 120
F GGR+TL ++ + H+ + PA V IER+ + F W G+ K +HL
Sbjct: 255 F-GGRITLIQSC-LTHMPCY---FLSLFKIPASVAAKIERMQRDFLWSGVGKGKRDHLVN 314
Query: 121 YDLISKSQSDGGVGFGALNSNFLSLF----------------RILLLPNGSVSYHWDADT 180
+D++ K +S GG+GFG ++ ++L +++L GS S WD +
Sbjct: 315 WDVVCKPKSRGGLGFGKISIRNVALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDVNN 374
Query: 181 -----------------QSWTASLRRMLEDEEQILLSSLLDKRVASQPDCRSWSLDPSGK 212
Q ++ R ++ED E ++ S +S PD RSWSL P G
Sbjct: 375 IVRWSHRCPWKAIALVYQEFSKFTRFVVEDLEGLMQSFDRLHISSSVPDKRSWSLSPLGL 434
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYJ97221.1 | 1.1e-27 | 35.06 | putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma... | [more] |
XP_038880332.1 | 1.8e-25 | 43.92 | uncharacterized protein LOC120071973 [Benincasa hispida] | [more] |
KAA0051398.1 | 5.7e-19 | 44.85 | Integrase, catalytic core [Cucumis melo var. makuwa] | [more] |
TYK31262.1 | 6.3e-18 | 40.65 | DENN domain and WD repeat-containing protein SCD1-like [Cucumis melo var. makuwa... | [more] |
RVW55296.1 | 1.5e-16 | 31.30 | putative ribonuclease H protein [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BF26 | 5.5e-28 | 35.06 | Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ... | [more] |
A0A5A7U808 | 2.7e-19 | 44.85 | Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... | [more] |
A0A5D3E5T3 | 3.0e-18 | 40.65 | DENN domain and WD repeat-containing protein SCD1-like OS=Cucumis melo var. maku... | [more] |
A0A438F5X5 | 7.5e-17 | 31.30 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1210 ... | [more] |
A0A438JNC2 | 3.7e-16 | 30.08 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_518 P... | [more] |
Match Name | E-value | Identity | Description | |