ClCG09G014770 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G014770
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase domain-containing protein
Location	CG_Chr09: 27553580 .. 27554425 (-)
RNA-Seq Expression	ClCG09G014770
Synteny	ClCG09G014770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGAACGCTACTGTGATTCTTAAATCTCTAAGAGGCTGGATTCAGAAAATCTTGAGGATTTTCGTCCAATTTCTTGTTGTAATGAGTTGTTGTATTAATAAGATTTTGTCTAATAGGTTGCAGGTTTTGGAATTCGTAGTTTGTTAGCGGGAATCAATCTGTTTATGTGCCTAGTGGGAGCATAGTGGATAATGTGGATTGTTATCATCTTAATAGGGGTGTCTCACGTTGTGTCCTAAAGGTTGACATTCGAAAGGCCTATGACTCTGTTAATTAAGATTTCACGTTTGGTGTGTTGCTTGCGGTTGGTAACACTTTGCAATTTGTCAGTTGAATAGTTCGCCTGTGGATTTTGGATTCTATCATCGGTGTGAGTGTATTTAGTTGACTCACTTGTGTTTTGTAGCTGTTCTCTTAATTTTTTTGTGCTGCTGAGAGGGAGTCCTTAGGGTTTATCATGGGATTTATGGGAAATGGGGGTAAGAGCTCAATGTTTGTTTCTGTTGTTAGCCAGGTGGAGGTTGTGGAGTTGGCTAGTAGTAGTATGGGGTTCTCTTGGATTCTCTCGCACTTCGTTATCCAAGTCTTTTAATTTTGTCAAGCTGGTTAAAGTATGTGGATTGCAAGCCTTTGATTGGGAGGATTACTATGCATGTAAATACCTCAGTCTGCTTGAACTCTTTCTTATATATGATGGTCATTAGCAGCCTATCTAGTCTATGATGTAAAGTTTTCATGTTTTTTGGGCTAGTGTGTTTGTACTACCTTCTTGGGTAACACATTGAGTTGGACTGGATTCGTGTGCTTATTTGGGGAGAGGTTCTAATGGTGGTAGGGATCGTGCG

mRNA sequence

TGTGAACGCTACTGTGATTCTTAAATCTCTAAGAGGCTGGATTCAGAAAATCTTGAGGATTTTCGTCCAATTTCTTGTTGTAATGAGTTGTTGTATTAATAAGATTTTGTCTAATAGGTTGCAGTTTGTTAGCGGGAATCAATCTGTTTATGTGCCTAGTGGGAGCATAGTGGATAATGTGGATTGTTATCATCTTAATAGGGGTGTCTCACGTTGTGTCCTAAAGGTTGACATTCGAAAGGCCTATGACTCTAGGGAGTCCTTAGGGTTTATCATGGGATTTATGGGAAATGGGGGTAAGAGCTCAATGTTTGTTTCTGTTGTTAGCCAGGTGGAGGTTGTGGAGTTGGCTAGTAGTAGTATGGGGTTCTCTTGGATTCTCTCGCACTTCGTTATCCAACTGGTTAAAGTATGTGGATTGCAAGCCTTTGATTGGGAGGATTACTATGCATGTAAATACCTCAGTCTGCTTGAACTCTTTCTTATATATGATGTTGGACTGGATTCGTGTGCTTATTTGGGGAGAGGTTCTAATGGTGGTAGGGATCGTGCG

Coding sequence (CDS)

ATGAGTTGTTGTATTAATAAGATTTTGTCTAATAGGTTGCAGTTTGTTAGCGGGAATCAATCTGTTTATGTGCCTAGTGGGAGCATAGTGGATAATGTGGATTGTTATCATCTTAATAGGGGTGTCTCACGTTGTGTCCTAAAGGTTGACATTCGAAAGGCCTATGACTCTAGGGAGTCCTTAGGGTTTATCATGGGATTTATGGGAAATGGGGGTAAGAGCTCAATGTTTGTTTCTGTTGTTAGCCAGGTGGAGGTTGTGGAGTTGGCTAGTAGTAGTATGGGGTTCTCTTGGATTCTCTCGCACTTCGTTATCCAACTGGTTAAAGTATGTGGATTGCAAGCCTTTGATTGGGAGGATTACTATGCATGTAAATACCTCAGTCTGCTTGAACTCTTTCTTATATATGATGTTGGACTGGATTCGTGTGCTTATTTGGGGAGAGGTTCTAATGGTGGTAGGGATCGTGCG

Protein sequence

MSCCINKILSNRLQFVSGNQSVYVPSGSIVDNVDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVSVVSQVEVVELASSSMGFSWILSHFVIQLVKVCGLQAFDWEDYYACKYLSLLELFLIYDVGLDSCAYLGRGSNGGRDRA

Homology

[Close]

BLAST of ClCG09G014770 vs. NCBI nr
Match: XP_031737043.1 (uncharacterized protein LOC116402131 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 7.4e-08
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 4   CINKILSNRL-----QFVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDI 63
           CI++IL++RL      FVSGNQS ++P  SI+DN       V  YHL+RG  RC +KVD+
Sbjct: 319 CISRILADRLCEWLPSFVSGNQSAFIPGRSIIDNILLCQELVGGYHLHRGNPRCTIKVDL 378

Query: 64  RKAYDSRESLGFIMGFMGNGGKSSMFVSVV 82
           +KAYDS  +  F+ G +   G +  FVS V
Sbjct: 379 QKAYDS-VNWDFLFGLLIAIGMAIRFVSWV 407

[Close]

BLAST of ClCG09G014770 vs. NCBI nr
Match: XP_031745730.1 (uncharacterized protein LOC116406187 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-07
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 4   CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDI 63
           CI++IL++RL+     FVSGNQ  ++P  SI+DN       V  YHL RG  RC +KVD+
Sbjct: 123 CISRILADRLRVWLPSFVSGNQPAFIPGRSIIDNILLCQELVGAYHLYRGKPRCTMKVDL 182

Query: 64  RKAYDSRESLGFIMGFMGNGGKSSMFVSVV 82
            KAYDS  +  F+ G +   G    FVS V
Sbjct: 183 HKAYDS-VNWDFLFGLLIAIGTPLRFVSWV 211

[Close]

BLAST of ClCG09G014770 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-07
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 4   CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDI 58
           CI+KIL++RL+     F+  NQS ++P  SI+DN       V+ YHLN G  RC LKVD+
Sbjct: 768 CISKILADRLRVWLPSFIGSNQSAFIPGRSIIDNILLCQELVEGYHLNSGKPRCTLKVDL 827

[Close]

BLAST of ClCG09G014770 vs. NCBI nr
Match: KAA0062318.1 (uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-07
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 4   CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDI 63
           CI+KIL++RL+     F+S NQS ++P  SI++N       V  YHLN G  RC LKVD+
Sbjct: 287 CISKILADRLRAWLPSFISSNQSAFIPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDL 346

Query: 64  RKAYDSRESLGFIMGFMGNGGKSSMFVS 80
           +KAYDS  +  F+ G +   G    FVS
Sbjct: 347 QKAYDS-VNWDFLFGLLIAIGTPLKFVS 373

[Close]

BLAST of ClCG09G014770 vs. NCBI nr
Match: KAA0046851.1 (uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-07
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 4   CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDI 63
           CI+KIL++RL+     F+S NQS ++P  SI++N       V  YHLN G  RC LKVD+
Sbjct: 492 CISKILADRLRLWLPSFISSNQSAFIPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDL 551

Query: 64  RKAYDSRESLGFIMGFMGNGGKSSMFVS-----VVSQVEVVELASSSMGF 97
           +KAYDS  +  F+ G +   G    FVS     V S +  + +  S  GF
Sbjct: 552 QKAYDS-VNWDFLFGLLIAIGTPLKFVSWIRACVTSSMFSIMINGSLEGF 600

[Close]

BLAST of ClCG09G014770 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 4   CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDI 58
           CI+KIL++RL+     F+  NQS ++P  SI+DN       V+ YHLN G  RC LKVD+
Sbjct: 768 CISKILADRLRVWLPSFIGSNQSAFIPGRSIIDNILLCQELVEGYHLNSGKPRCTLKVDL 827

[Close]

BLAST of ClCG09G014770 vs. ExPASy TrEMBL
Match: A0A5A7V3Z0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00690 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 4   CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDI 63
           CI+KIL++RL+     F+S NQS ++P  SI++N       V  YHLN G  RC LKVD+
Sbjct: 287 CISKILADRLRAWLPSFISSNQSAFIPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDL 346

Query: 64  RKAYDSRESLGFIMGFMGNGGKSSMFVS 80
           +KAYDS  +  F+ G +   G    FVS
Sbjct: 347 QKAYDS-VNWDFLFGLLIAIGTPLKFVS 373

[Close]

BLAST of ClCG09G014770 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 4   CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDI 63
           CI+KIL++RL+     F+S NQS ++P  SI++N       V  YHLN G  RC LKVD+
Sbjct: 492 CISKILADRLRLWLPSFISSNQSAFIPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDL 551

Query: 64  RKAYDSRESLGFIMGFMGNGGKSSMFVS-----VVSQVEVVELASSSMGF 97
           +KAYDS  +  F+ G +   G    FVS     V S +  + +  S  GF
Sbjct: 552 QKAYDS-VNWDFLFGLLIAIGTPLKFVSWIRACVTSSMFSIMINGSLEGF 600

[Close]

BLAST of ClCG09G014770 vs. ExPASy TrEMBL
Match: A0A5A7V4C1 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00110 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-07
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 4   CINKILSNRL-----QFVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDI 63
           CI+KIL++R+      F+S NQS ++P  SI+DN       V  YHLN G  R  LKVD+
Sbjct: 212 CISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGYHLNFGKPRYTLKVDL 271

Query: 64  RKAYDS-------------RESLGFI-MGFMGNGGKSSMFVSVVSQVEVVELASSSMGF 97
           +KAYDS                L F+  G   N  KSS+FV+ VS      LA +SMGF
Sbjct: 272 QKAYDSVNWDFLFGLLIAIGTPLKFVTSGLFANLRKSSIFVAGVSHEAASHLA-ASMGF 329

[Close]

BLAST of ClCG09G014770 vs. ExPASy TrEMBL
Match: A0A5D3DT20 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003080 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-07
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 4   CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDI 58
           CI+KIL++RL+     F+S NQS ++P  SI++N       V  YHLN G  RC LKVD+
Sbjct: 285 CISKILADRLRAWLPSFISSNQSAFIPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDL 344

The following BLAST results are available for this feature:

BLAST of ClCG09G014770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737043.1	7.4e-08	45.56	uncharacterized protein LOC116402131 [Cucumis sativus]	[more]
XP_031745730.1	3.7e-07	44.44	uncharacterized protein LOC116406187 [Cucumis sativus]	[more]
KAA0062888.1	3.7e-07	50.00	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
KAA0062318.1	4.8e-07	44.32	uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]	[more]
KAA0046851.1	4.8e-07	40.00	uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG09G014770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG09G014770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	1.8e-07	50.00	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5A7V3Z0	2.3e-07	44.32	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7TZS0	2.3e-07	40.00	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7V4C1	3.0e-07	41.18	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DT20	3.9e-07	50.00	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of ClCG09G014770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G014770.1	ClCG09G014770.1	mRNA