Carg21265 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21265
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCox19-like CHCH family protein
LocationCarg_Chr15: 9007820 .. 9008675 (+)
RNA-Seq ExpressionCarg21265
SyntenyCarg21265
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCGGCATTGTTTACGATTCCTGGTTGATTTCCGCCATGGGTGAACCTCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAATCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGGTAGTCATTCCCTCTCTTCAATTTTCCCTATGACTTCATTGTTTATTTCCATGTTCTTGTAATCAATTGGTGCTGTATTTGGAATTCTCGAATTAGGTCGTCCAGCTCTCGGAATAGGATTTGCCGAGTATTTGTTGAAATTTTGTTGCGTTGTTCTCATCGGAGTTCAAATTGTGATTCACCTATTATGTTTGGATTGAAATAGTTCTTTTAACTGTTCTGGAATGACATTTGATTTCATGCGAGTTTTCTTATTATGAATTTTCTTTGAATCGTTCCTTCGACGGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAATGCTTGAAGGAATTTTGTAAGAGAAGGATATTGTTCATCTTAAAGTAAGTTCTGTTGTTGATTGTATTTGAAGTTTCCATTTCTAGGAGATATTTATACCTTTCCTTCCAATTACTGAGAATTGAATTATAACTTGTTTCATTTATAATTTTAAGTGTAGGGATCAAATAGACACAAACCTCAAAAACCTCAAATCTTAGAGAGATTTATCAAAAATAGGCATAAGCATTAAACAGCAAGCATTCAAATTAGAGGTTTGAAAGTTTGTAGTCCAAAAAGATAGTCTGCATTATGATTGCATTCTTCTACATGTAAAGCTCAGTTCTTGACATTAAACCAGAAAGC

mRNA sequence

CGCGGCATTGTTTACGATTCCTGGTTGATTTCCGCCATGGGTGAACCTCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAATCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAATGCTTGAAGGAATTTTGTAAGAGAAGGATATTGTTCATCTTAAAGTAAGTTCTGTTGTTGATTGTATTTGAAGTTTCCATTTCTAGGAGATATTTATACCTTTCCTTCCAATTACTGAGAATTGAATTATAACTTGTTTCATTTATAATTTTAAGTGTAGGGATCAAATAGACACAAACCTCAAAAACCTCAAATCTTAGAGAGATTTATCAAAAATAGGCATAAGCATTAAACAGCAAGCATTCAAATTAGAGGTTTGAAAGTTTGTAGTCCAAAAAGATAGTCTGCATTATGATTGCATTCTTCTACATGTAAAGCTCAGTTCTTGACATTAAACCAGAAAGC

Coding sequence (CDS)

CGCGGCATTGTTTACGATTCCTGGTTGATTTCCGCCATGGGTGAACCTCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAATCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAATGCTTGA

Protein sequence

RGIVYDSWLISAMGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVISKKFSLADEEQTKQMKNA
Homology
BLAST of Carg21265 vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.3 bits (386), Expect = 8.1e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  RGIVYDSWLISAMGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVISKKFS 60
          RGIVYDSWLISAMGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVISKKFS
Sbjct: 1  RGIVYDSWLISAMGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVISKKFS 60

Query: 61 LADEEQTKQMKNA 74
          LADEEQTKQMKNA
Sbjct: 61 LADEEQTKQMKNA 73

BLAST of Carg21265 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTKQ 72
          M EP+ QPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECV+S   KKFSLA+EEQTK 
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 73 M--KNA 74
          +  KNA
Sbjct: 61 IIKKNA 66

BLAST of Carg21265 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 3.7e-18
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0

Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTK 69
          M EP+ QPVCAQEAL+LLNCVTESPFDQ KCYRLLHSLRECV+S   KKFSLA+EEQTK
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTK 59

BLAST of Carg21265 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 5.3e-17
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTKQ 70
          M + ++QPVCAQEALDLLNCVT+SPFDQ+KCYRLLHSLRECV+S   KKFSLADEE+ K+
Sbjct: 1  MDDAQAQPVCAQEALDLLNCVTDSPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKR 60

BLAST of Carg21265 vs. NCBI nr
Match: KAF5734209.1 (hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii])

HSP 1 Score: 86.7 bits (213), Expect = 9.3e-14
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 0

Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEE 66
          M E R++PVCAQEALDLLNCVT+SPFDQ+KC +LL+SLRECV++   KKFSLAD+E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

BLAST of Carg21265 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTKQ 72
          M EP+ QPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECV+S   KKFSLA+EEQTK 
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 73 M--KNA 74
          +  KNA
Sbjct: 61 IIKKNA 66

BLAST of Carg21265 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0

Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTK 69
          M EP+ QPVCAQEAL+LLNCVTESPFDQ KCYRLLHSLRECV+S   KKFSLA+EEQTK
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTK 59

BLAST of Carg21265 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.5e-14
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 0

Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEE 66
          M E R++PVCAQEALDLLNCVT+SPFDQ+KC +LL+SLRECV++   KKFSLAD+E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

BLAST of Carg21265 vs. ExPASy TrEMBL
Match: A0A5N6R867 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012852 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 14 GEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 67
          G  +SQPVCAQEALDLLNCV +SP+DQ KC RLL SLRECV++   KKFSLAD+ Q
Sbjct: 5  GSAQSQPVCAQEALDLLNCVAQSPYDQDKCLRLLQSLRECVLNKKVKKFSLADQRQ 60

BLAST of Carg21265 vs. ExPASy TrEMBL
Match: A0A314V446 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_25850 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.8e-13
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 67
          MG+ R + VC QEALDLLNCVT+SPFDQ+KC  LL+SLRECV++   KKFSLAD+EQ
Sbjct: 1  MGDGRGKAVCGQEALDLLNCVTQSPFDQEKCVLLLNSLRECVLNKKVKKFSLADQEQ 57

BLAST of Carg21265 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein )

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-14
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 10  ISAMGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 69
           I +M +  +QP+C QEAL LLNCV ESPFDQ+KC R L SLRECV+S   KKFS+  ++ 
Sbjct: 44  IPSMEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQDH 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7017003.18.1e-34100.00hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN50036.12.1e-1878.79hypothetical protein Csa_000619 [Cucumis sativus][more]
KAA0042698.13.7e-1883.05Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like... [more]
KAG6606053.15.3e-1776.67hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF5734209.19.3e-1473.21hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQS71.0e-1878.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1[more]
A0A5D3C4E21.8e-1883.05Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A7J7CJI74.5e-1473.21Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 ... [more]
A0A5N6R8672.9e-1371.43Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012852 PE=4 SV=1[more]
A0A314V4463.8e-1370.18Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_258... [more]
Match NameE-valueIdentityDescription
AT4G23760.12.6e-1455.56Cox19-like CHCH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1130CytochromE C oxidase copper chaperonecoord: 17..73
e-value: 1.9E-5
score: 26.5
NoneNo IPR availablePANTHERPTHR37750COX19-LIKE CHCH FAMILY PROTEINcoord: 8..70
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 20..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21265-RACarg21265-RAmRNA